Wall clock time and date at job start Fri Apr 10 2020 23:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99650 * 2 1 4 4 H 1.48500 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46942 * 299.99652 * 3 2 1 6 6 H 1.48496 * 109.47169 * 59.99550 * 3 2 1 7 7 C 1.38802 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00397 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00266 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00250 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49875 * 325.00016 * 10 9 7 12 12 C 1.53035 * 109.52615 * 204.92504 * 10 9 7 13 13 C 1.53041 * 109.54250 * 178.67032 * 12 10 9 14 14 C 1.53197 * 109.31310 * 61.35906 * 13 12 10 15 15 N 1.46929 * 108.77313 * 305.36928 * 14 13 12 16 16 C 1.34776 * 120.62942 * 233.58551 * 15 14 13 17 17 O 1.21647 * 120.00174 * 173.22497 * 16 15 14 18 18 C 1.47073 * 120.00044 * 353.22953 * 16 15 14 19 19 C 1.35899 * 125.42728 * 155.45886 * 18 16 15 20 20 C 1.41430 * 107.67774 * 179.90302 * 19 18 16 21 21 C 1.39841 * 134.34837 * 180.02562 * 20 19 18 22 22 N 1.31565 * 120.03931 * 180.33266 * 21 20 19 23 23 C 1.32366 * 122.31847 * 0.02562 * 22 21 20 24 24 C 1.36635 * 121.64677 * 359.97438 * 23 22 21 25 25 C 1.39428 * 119.01489 * 0.02562 * 24 23 22 26 26 N 1.36879 * 134.32924 * 179.97438 * 25 24 23 27 27 H 0.97005 * 125.58813 * 0.05417 * 26 25 24 28 28 C 1.46928 * 118.73926 * 53.60831 * 15 14 13 29 29 H 0.96998 * 120.00637 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99291 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.45683 * 298.68559 * 12 10 9 32 32 H 1.08994 * 109.46328 * 58.64092 * 12 10 9 33 33 H 1.09001 * 109.49361 * 301.40795 * 13 12 10 34 34 H 1.08996 * 109.52833 * 181.33147 * 13 12 10 35 35 H 1.08999 * 109.58276 * 185.58396 * 14 13 12 36 36 H 1.08999 * 109.58406 * 65.15344 * 14 13 12 37 37 H 1.08006 * 126.16033 * 0.03916 * 19 18 16 38 38 H 1.07995 * 119.97957 * 0.30836 * 21 20 19 39 39 H 1.07999 * 119.17220 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.49222 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.58111 * 186.59909 * 28 15 14 42 42 H 1.09001 * 109.58365 * 66.17685 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8912 2.3965 1.2124 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9690 -3.5509 -0.5888 12 6 1.1812 -4.7537 -0.6073 13 6 1.9580 -6.0720 -0.6379 14 6 2.3201 -6.4800 0.7936 15 7 3.0393 -5.3704 1.4341 16 6 4.2429 -5.5715 2.0063 17 8 4.8837 -4.6255 2.4236 18 6 4.7815 -6.9348 2.1263 19 6 6.0982 -7.2556 2.2265 20 6 6.1910 -8.6635 2.3247 21 6 7.2511 -9.5670 2.4482 22 7 7.0113 -10.8590 2.5120 23 6 5.7848 -11.3543 2.4631 24 6 4.6896 -10.5463 2.3432 25 6 4.8723 -9.1659 2.2702 26 7 4.0290 -8.0945 2.1499 27 1 3.0618 -8.1412 2.0909 28 6 2.4214 -4.0374 1.4392 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 0.2821 -4.8761 -0.0034 32 1 0.9009 -4.4737 -1.6227 33 1 2.8698 -5.9434 -1.2212 34 1 1.3417 -6.8476 -1.0925 35 1 2.9573 -7.3641 0.7714 36 1 1.4101 -6.6968 1.3530 37 1 6.9249 -6.5605 2.2324 38 1 8.2674 -9.2040 2.4908 39 1 5.6464 -12.4239 2.5195 40 1 3.6970 -10.9705 2.3054 41 1 3.1254 -3.3099 1.8431 42 1 1.5196 -4.0551 2.0512 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999500435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:01 Heat of formation + Delta-G solvation = 63.345423 kcal Electronic energy + Delta-G solvation = -25564.345477 eV Core-core repulsion = 21931.662418 eV Total energy + Delta-G solvation = -3632.683059 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.24611 -40.00144 -38.19252 -37.42032 -34.66246 -32.75854 -32.48205 -31.46474 -30.91063 -29.62564 -28.39805 -25.97944 -24.44089 -23.77128 -23.01432 -22.03985 -21.61489 -20.46601 -19.66584 -18.17853 -17.78402 -17.16291 -16.20955 -15.92808 -15.59092 -15.54481 -14.90355 -14.85292 -14.53255 -14.33179 -14.26389 -13.76223 -13.64061 -13.44759 -13.36146 -13.06286 -12.91568 -12.56121 -12.36135 -11.81063 -11.47990 -11.17357 -10.92237 -10.77702 -10.71012 -10.39293 -10.24486 -10.14148 -9.92305 -9.83074 -9.73661 -9.18614 -9.11183 -8.58495 -8.23367 -7.07837 -5.84725 -3.15205 0.37508 1.22303 1.82317 2.44514 2.84973 3.21095 3.41029 3.47835 3.50082 3.64302 4.16359 4.23354 4.29948 4.49480 4.61083 4.64808 4.78340 4.86166 4.96580 5.01413 5.12119 5.28817 5.38114 5.42255 5.44267 5.54070 5.66201 5.68120 5.79152 5.85613 6.00412 6.04927 6.09360 6.20660 6.23130 6.33872 6.47508 6.56294 6.70097 6.85358 6.91355 7.36935 7.67100 7.79274 8.06073 8.33082 9.45308 9.97764 10.32921 11.37408 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.002829 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.429495 B = 9894.506291 C =10621.746116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.717 5.717 10 C 0.169 3.831 11 H 0.053 0.947 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.086 3.914 15 N -0.601 5.601 16 C 0.576 3.424 17 O -0.516 6.516 18 C 0.030 3.970 19 C -0.098 4.098 20 C -0.171 4.171 21 C 0.176 3.824 22 N -0.508 5.508 23 C 0.102 3.898 24 C -0.180 4.180 25 C 0.133 3.867 26 N -0.571 5.571 27 H 0.425 0.575 28 C 0.092 3.908 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.162 0.838 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.132 0.868 41 H 0.095 0.905 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.491 -23.444 2.831 24.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.071 0.929 12 C -0.165 4.165 13 C -0.166 4.166 14 C -0.037 4.037 15 N -0.334 5.334 16 C 0.362 3.638 17 O -0.391 6.391 18 C -0.079 4.079 19 C -0.126 4.126 20 C -0.179 4.179 21 C 0.009 3.991 22 N -0.217 5.217 23 C -0.046 4.046 24 C -0.203 4.203 25 C 0.015 3.985 26 N -0.181 5.181 27 H 0.268 0.732 28 C -0.032 4.032 29 H 0.065 0.935 30 H 0.220 0.780 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.179 0.821 38 H 0.179 0.821 39 H 0.174 0.826 40 H 0.150 0.850 41 H 0.113 0.887 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 7.385 -23.321 3.110 24.659 hybrid contribution -1.322 1.431 -0.074 1.950 sum 6.063 -21.890 3.036 22.916 Atomic orbital electron populations 1.69666 1.05153 1.25762 1.57375 1.24757 0.95529 0.97833 1.02493 0.86113 0.79017 0.83878 0.77203 1.20339 1.21800 1.21740 1.19320 0.91173 0.83885 1.43145 0.90895 1.42380 1.05806 0.99547 1.88050 1.20480 0.95042 0.86519 0.92245 0.92923 1.21836 0.98637 0.93911 1.02110 1.21851 1.01208 0.98496 0.95057 1.22194 0.96912 0.89552 0.95090 1.48252 1.18329 1.11655 1.55193 1.17264 0.81308 0.86242 0.79007 1.90880 1.57732 1.41339 1.49120 1.20438 0.91707 0.86008 1.09702 1.20873 0.95023 0.93508 1.03178 1.19237 0.93863 0.94698 1.10057 1.22530 0.98192 0.87265 0.91158 1.67671 1.23864 1.14660 1.15529 1.22083 0.86938 1.00025 0.95517 1.20788 1.01406 0.89665 1.08463 1.18456 0.90226 0.89511 1.00258 1.42688 1.09038 1.03943 1.62443 0.73162 1.22926 0.97845 0.80853 1.01568 0.93455 0.78042 0.91948 0.91117 0.91300 0.90788 0.89978 0.91007 0.82083 0.82123 0.82623 0.84972 0.88700 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.54 13.06 55.49 0.72 -26.82 16 2 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 8 H 0.07 1.99 7.83 -52.48 -0.41 1.57 16 9 N -0.72 -17.23 5.13 -53.32 -0.27 -17.51 16 10 C 0.17 3.18 2.92 -67.82 -0.20 2.98 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.85 5.36 -26.69 -0.14 -1.99 16 13 C -0.13 -1.39 6.08 -26.61 -0.16 -1.55 16 14 C 0.09 0.88 5.26 -3.71 -0.02 0.86 16 15 N -0.60 -8.56 2.97 -174.16 -0.52 -9.08 16 16 C 0.58 8.84 7.62 -12.68 -0.10 8.75 16 17 O -0.52 -9.95 16.36 5.24 0.09 -9.86 16 18 C 0.03 0.37 6.30 -82.22 -0.52 -0.15 16 19 C -0.10 -1.14 10.62 -39.21 -0.42 -1.56 16 20 C -0.17 -1.83 6.21 -106.95 -0.66 -2.49 16 21 C 0.18 1.70 11.29 -17.07 -0.19 1.51 16 22 N -0.51 -5.21 10.33 -13.18 -0.14 -5.34 16 23 C 0.10 0.85 11.09 -17.90 -0.20 0.65 16 24 C -0.18 -1.43 10.09 -39.72 -0.40 -1.83 16 25 C 0.13 1.31 7.32 -84.03 -0.62 0.69 16 26 N -0.57 -5.40 4.78 -7.31 -0.03 -5.44 16 27 H 0.42 3.03 6.38 -40.82 -0.26 2.77 16 28 C 0.09 1.64 6.03 -3.71 -0.02 1.61 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.39 9.75 7.80 -40.82 -0.32 9.43 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.69 4.23 -51.93 -0.22 0.47 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 39 H 0.16 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.13 0.69 8.06 -52.48 -0.42 0.26 16 41 H 0.09 1.99 7.00 -51.93 -0.36 1.63 16 42 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 345.82 15.07 5.21 5.21 Total: -1.00 -33.08 345.82 -9.21 -42.29 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.36 Total: 8.92 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -3.89 Total: 0.29 kcal Atomic # 7 Polarization: -63.95 SS G_CDS: -0.24 Total: -64.19 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.08 -9.21 -42.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999500435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.632 kcal (2) G-P(sol) polarization free energy of solvation -33.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds