Wall clock time and date at job start Fri Apr 10 2020 23:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99650 * 2 1 4 4 H 1.48500 * 109.47156 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46942 * 299.99652 * 3 2 1 6 6 H 1.48496 * 109.47169 * 59.99550 * 3 2 1 7 7 C 1.38802 * 120.00214 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00397 * 180.02562 * 7 2 1 9 9 N 1.36945 * 120.00266 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00250 * 179.97438 * 9 7 2 11 11 H 1.09003 * 109.49875 * 325.00016 * 10 9 7 12 12 C 1.53035 * 109.52615 * 204.92504 * 10 9 7 13 13 C 1.53041 * 109.54250 * 178.67032 * 12 10 9 14 14 C 1.53197 * 109.31310 * 61.35906 * 13 12 10 15 15 N 1.46929 * 108.77313 * 305.36928 * 14 13 12 16 16 C 1.34776 * 120.62942 * 233.58551 * 15 14 13 17 17 O 1.21647 * 120.00174 * 173.22497 * 16 15 14 18 18 C 1.47073 * 120.00044 * 353.22953 * 16 15 14 19 19 C 1.35899 * 125.42728 * 155.45886 * 18 16 15 20 20 C 1.41430 * 107.67774 * 179.90302 * 19 18 16 21 21 C 1.39841 * 134.34837 * 180.02562 * 20 19 18 22 22 N 1.31565 * 120.03931 * 180.33266 * 21 20 19 23 23 C 1.32366 * 122.31847 * 0.02562 * 22 21 20 24 24 C 1.36635 * 121.64677 * 359.97438 * 23 22 21 25 25 C 1.39428 * 119.01489 * 0.02562 * 24 23 22 26 26 N 1.36879 * 134.32924 * 179.97438 * 25 24 23 27 27 H 0.97005 * 125.58813 * 0.05417 * 26 25 24 28 28 C 1.46928 * 118.73926 * 53.60831 * 15 14 13 29 29 H 0.96998 * 120.00637 * 0.02562 * 1 2 3 30 30 H 0.97003 * 119.99291 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.45683 * 298.68559 * 12 10 9 32 32 H 1.08994 * 109.46328 * 58.64092 * 12 10 9 33 33 H 1.09001 * 109.49361 * 301.40795 * 13 12 10 34 34 H 1.08996 * 109.52833 * 181.33147 * 13 12 10 35 35 H 1.08999 * 109.58276 * 185.58396 * 14 13 12 36 36 H 1.08999 * 109.58406 * 65.15344 * 14 13 12 37 37 H 1.08006 * 126.16033 * 0.03916 * 19 18 16 38 38 H 1.07995 * 119.97957 * 0.30836 * 21 20 19 39 39 H 1.07999 * 119.17220 * 179.97438 * 23 22 21 40 40 H 1.08003 * 120.49222 * 180.02562 * 24 23 22 41 41 H 1.09000 * 109.58111 * 186.59909 * 28 15 14 42 42 H 1.09001 * 109.58365 * 66.17685 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3965 -1.2126 6 1 1.8912 2.3965 1.2124 7 6 2.0102 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9690 -3.5509 -0.5888 12 6 1.1812 -4.7537 -0.6073 13 6 1.9580 -6.0720 -0.6379 14 6 2.3201 -6.4800 0.7936 15 7 3.0393 -5.3704 1.4341 16 6 4.2429 -5.5715 2.0063 17 8 4.8837 -4.6255 2.4236 18 6 4.7815 -6.9348 2.1263 19 6 6.0982 -7.2556 2.2265 20 6 6.1910 -8.6635 2.3247 21 6 7.2511 -9.5670 2.4482 22 7 7.0113 -10.8590 2.5120 23 6 5.7848 -11.3543 2.4631 24 6 4.6896 -10.5463 2.3432 25 6 4.8723 -9.1659 2.2702 26 7 4.0290 -8.0945 2.1499 27 1 3.0618 -8.1412 2.0909 28 6 2.4214 -4.0374 1.4392 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3880 -0.0002 31 1 0.2821 -4.8761 -0.0034 32 1 0.9009 -4.4737 -1.6227 33 1 2.8698 -5.9434 -1.2212 34 1 1.3417 -6.8476 -1.0925 35 1 2.9573 -7.3641 0.7714 36 1 1.4101 -6.6968 1.3530 37 1 6.9249 -6.5605 2.2324 38 1 8.2674 -9.2040 2.4908 39 1 5.6464 -12.4239 2.5195 40 1 3.6970 -10.9705 2.3054 41 1 3.1254 -3.3099 1.8431 42 1 1.5196 -4.0551 2.0512 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999500435.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:01 Heat of formation + Delta-G solvation = 40.870530 kcal Electronic energy + Delta-G solvation = -25565.320062 eV Core-core repulsion = 21931.662418 eV Total energy + Delta-G solvation = -3633.657644 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.06149 -41.11832 -39.07476 -38.66139 -36.32714 -34.07632 -33.44358 -32.86219 -31.89249 -30.50542 -29.92200 -27.11611 -26.00894 -24.95159 -23.84064 -23.28378 -22.56202 -21.58606 -20.81737 -19.24790 -18.90948 -18.80947 -17.33407 -16.98325 -16.64913 -16.43376 -16.31757 -15.90134 -15.59322 -15.52811 -15.27151 -15.20977 -15.03963 -14.54242 -14.24189 -14.11256 -14.10652 -13.81016 -13.63856 -13.11117 -12.94042 -12.59957 -12.47342 -12.19638 -12.08131 -11.97755 -11.77897 -11.41742 -11.34500 -11.14232 -11.10522 -10.51963 -9.98494 -9.83105 -9.08698 -8.99160 -8.01299 -5.30558 -0.41280 0.50530 0.92146 1.43006 1.44565 1.54088 1.57386 1.75828 2.16676 2.51413 2.95183 3.23550 3.32599 3.55454 3.60506 3.66820 3.91471 3.92341 3.93584 4.04289 4.08835 4.21022 4.23939 4.30770 4.43587 4.55091 4.62366 4.70746 4.76112 4.80193 4.88494 4.92208 5.00771 5.06485 5.25543 5.31249 5.36922 5.39301 5.43982 5.50109 5.80489 6.17901 6.21695 6.25464 6.86622 7.12380 7.28762 7.99892 8.25187 9.21338 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.028122 B = 0.002829 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.429495 B = 9894.506291 C =10621.746116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.966 3.034 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.167 3.833 11 H 0.030 0.970 12 C -0.118 4.118 13 C -0.119 4.119 14 C 0.082 3.918 15 N -0.598 5.598 16 C 0.574 3.426 17 O -0.568 6.568 18 C 0.015 3.985 19 C -0.097 4.097 20 C -0.191 4.191 21 C 0.172 3.828 22 N -0.528 5.528 23 C 0.098 3.902 24 C -0.174 4.174 25 C 0.132 3.868 26 N -0.558 5.558 27 H 0.436 0.564 28 C 0.107 3.893 29 H 0.253 0.747 30 H 0.378 0.622 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.102 0.898 37 H 0.160 0.840 38 H 0.178 0.822 39 H 0.186 0.814 40 H 0.166 0.834 41 H 0.053 0.947 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.178 -26.877 2.684 27.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.796 3.204 4 H -0.198 1.198 5 H -0.215 1.215 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.057 3.943 11 H 0.048 0.952 12 C -0.156 4.156 13 C -0.158 4.158 14 C -0.039 4.039 15 N -0.330 5.330 16 C 0.362 3.638 17 O -0.447 6.447 18 C -0.094 4.094 19 C -0.125 4.125 20 C -0.198 4.198 21 C 0.005 3.995 22 N -0.238 5.238 23 C -0.049 4.049 24 C -0.197 4.197 25 C 0.014 3.986 26 N -0.169 5.169 27 H 0.283 0.717 28 C -0.018 4.018 29 H 0.062 0.938 30 H 0.211 0.789 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.120 0.880 37 H 0.178 0.822 38 H 0.195 0.805 39 H 0.203 0.797 40 H 0.184 0.816 41 H 0.072 0.928 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.065 -26.832 2.947 27.902 hybrid contribution -1.145 2.327 -0.022 2.593 sum 5.920 -24.505 2.925 25.379 Atomic orbital electron populations 1.69784 1.06273 1.26134 1.59095 1.25463 0.96382 1.00754 1.03359 0.85183 0.78090 0.80240 0.76933 1.19781 1.21530 1.21823 1.19537 0.91046 0.85424 1.41590 0.91673 1.42497 1.05552 1.00522 1.88254 1.20645 0.94694 0.86173 0.92813 0.95169 1.21740 0.98534 0.94124 1.01245 1.21842 1.00929 0.97304 0.95691 1.22556 0.98173 0.88595 0.94625 1.48221 1.18312 1.11275 1.55179 1.17661 0.80949 0.87068 0.78076 1.90846 1.59199 1.43322 1.51370 1.19848 0.92122 0.85221 1.12206 1.21014 0.94963 0.94369 1.02184 1.19331 0.95016 0.94172 1.11265 1.22834 0.98919 0.87160 0.90627 1.67733 1.25194 1.14737 1.16108 1.22661 0.86420 1.01609 0.94201 1.21125 1.02979 0.88463 1.07120 1.18732 0.89801 0.90296 0.99748 1.42473 1.09445 1.02821 1.62181 0.71749 1.22346 0.96947 0.82260 1.00235 0.93804 0.78889 0.90892 0.91879 0.92219 0.86666 0.87603 0.88009 0.82226 0.80478 0.79726 0.81612 0.92804 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.13 13.06 21.65 0.28 -57.84 16 2 C -0.07 -3.84 5.50 84.86 0.47 -3.38 16 3 Si 0.97 46.99 29.55 68.60 2.03 49.02 16 4 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 6 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 7 C -0.24 -13.75 9.93 84.03 0.83 -12.92 16 8 H 0.07 3.69 7.83 -2.91 -0.02 3.67 16 9 N -0.73 -36.05 5.13 -322.59 -1.65 -37.70 16 10 C 0.17 6.43 2.92 45.07 0.13 6.56 16 11 H 0.03 1.29 8.08 -2.39 -0.02 1.27 16 12 C -0.12 -3.29 5.36 30.62 0.16 -3.12 16 13 C -0.12 -2.24 6.08 30.67 0.19 -2.05 16 14 C 0.08 1.41 5.26 86.36 0.45 1.87 16 15 N -0.60 -16.75 2.97 -823.17 -2.45 -19.20 16 16 C 0.57 17.89 7.62 86.56 0.66 18.55 16 17 O -0.57 -23.16 16.36 -4.18 -0.07 -23.23 16 18 C 0.01 0.35 6.30 39.90 0.25 0.61 16 19 C -0.10 -2.21 10.62 22.51 0.24 -1.97 16 20 C -0.19 -3.76 6.21 -21.37 -0.13 -3.90 16 21 C 0.17 3.03 11.29 85.12 0.96 4.00 16 22 N -0.53 -9.54 10.33 -195.62 -2.02 -11.56 16 23 C 0.10 1.29 11.09 84.24 0.93 2.22 16 24 C -0.17 -2.05 10.09 22.18 0.22 -1.83 16 25 C 0.13 2.21 7.32 39.38 0.29 2.49 16 26 N -0.56 -9.02 4.78 -177.05 -0.85 -9.87 16 27 H 0.44 4.56 6.38 -92.70 -0.59 3.97 16 28 C 0.11 3.93 6.03 86.36 0.52 4.45 16 29 H 0.25 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.38 19.61 7.80 -92.71 -0.72 18.89 16 31 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.11 1.38 4.23 -2.39 -0.01 1.37 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.16 3.51 8.06 -2.91 -0.02 3.49 16 38 H 0.18 2.27 8.06 -2.91 -0.02 2.25 16 39 H 0.19 1.22 8.06 -2.91 -0.02 1.20 16 40 H 0.17 0.81 8.06 -2.91 -0.02 0.78 16 41 H 0.05 2.41 7.00 -2.39 -0.02 2.39 16 42 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -75.43 345.82 1.21 -74.21 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -0.24 Total: 24.60 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: 6.18 Total: 11.57 kcal Atomic # 7 Polarization: -129.50 SS G_CDS: -6.68 Total: -136.18 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -0.07 Total: -23.23 kcal Atomic # 14 Polarization: 46.99 SS G_CDS: 2.03 Total: 49.02 kcal Total: -75.43 1.21 -74.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999500435.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.084 kcal (2) G-P(sol) polarization free energy of solvation -75.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds