Wall clock time and date at job start Fri Apr 10 2020 23:00:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 119.99770 * 2 1 4 4 H 1.48502 * 109.47294 * 270.27614 * 3 2 1 5 5 H 1.48495 * 109.47170 * 30.27847 * 3 2 1 6 6 H 1.48498 * 109.47078 * 150.27798 * 3 2 1 7 7 C 1.38804 * 120.00022 * 180.28415 * 2 1 3 8 8 H 1.08006 * 120.00203 * 179.72339 * 7 2 1 9 9 N 1.36938 * 120.00191 * 359.71482 * 7 2 1 10 10 C 1.46499 * 120.00221 * 180.02562 * 9 7 2 11 11 H 1.09010 * 109.49404 * 34.94169 * 10 9 7 12 12 C 1.53036 * 109.49877 * 154.99975 * 10 9 7 13 13 C 1.53045 * 109.54231 * 181.31726 * 12 10 9 14 14 C 1.53192 * 109.31024 * 298.64087 * 13 12 10 15 15 N 1.46926 * 108.77846 * 54.62962 * 14 13 12 16 16 C 1.34780 * 120.63156 * 126.41002 * 15 14 13 17 17 O 1.21642 * 120.00123 * 179.78667 * 16 15 14 18 18 C 1.47075 * 119.99582 * 359.79244 * 16 15 14 19 19 C 1.35902 * 125.42018 * 209.64146 * 18 16 15 20 20 C 1.41434 * 107.67426 * 179.90442 * 19 18 16 21 21 C 1.39838 * 134.35050 * 180.02562 * 20 19 18 22 22 N 1.31553 * 120.04218 * 180.33614 * 21 20 19 23 23 C 1.32368 * 122.32196 * 0.02562 * 22 21 20 24 24 C 1.36640 * 121.64453 * 0.02562 * 23 22 21 25 25 C 1.39437 * 119.00960 * 359.97438 * 24 23 22 26 26 N 1.36881 * 134.32240 * 179.97438 * 25 24 23 27 27 H 0.96993 * 125.58586 * 0.04056 * 26 25 24 28 28 C 1.46921 * 118.73809 * 306.39387 * 15 14 13 29 29 H 0.97006 * 120.00457 * 359.72306 * 1 2 3 30 30 H 0.96998 * 120.00053 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46097 * 301.33907 * 12 10 9 32 32 H 1.08998 * 109.46253 * 61.31331 * 12 10 9 33 33 H 1.09006 * 109.49165 * 58.58665 * 13 12 10 34 34 H 1.08996 * 109.50249 * 178.64850 * 13 12 10 35 35 H 1.09006 * 109.58486 * 174.41806 * 14 13 12 36 36 H 1.09003 * 109.58328 * 294.69959 * 14 13 12 37 37 H 1.08004 * 126.16655 * 0.02562 * 19 18 16 38 38 H 1.08002 * 119.98092 * 0.33691 * 21 20 19 39 39 H 1.07996 * 119.17568 * 179.97438 * 23 22 21 40 40 H 1.07993 * 120.49113 * 179.97438 * 24 23 22 41 41 H 1.08994 * 109.58712 * 293.81883 * 28 15 14 42 42 H 1.09005 * 109.58465 * 173.39623 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4918 2.0499 -1.4001 5 1 1.4505 2.6509 0.7059 6 1 3.5506 1.4386 0.6941 7 6 2.0102 -1.2021 -0.0060 8 1 3.0902 -1.2021 -0.0105 9 7 1.3256 -2.3880 -0.0059 10 6 2.0581 -3.6567 -0.0117 11 1 2.9718 -3.5519 0.5735 12 6 1.1836 -4.7542 0.5990 13 6 1.9599 -6.0729 0.6236 14 6 2.3144 -6.4789 -0.8104 15 7 3.0309 -5.3687 -1.4529 16 6 4.2314 -5.5696 -2.0317 17 8 4.8128 -4.6430 -2.5637 18 6 4.8383 -6.9092 -2.0200 19 6 6.1722 -7.1696 -2.0212 20 6 6.3354 -8.5744 -2.0053 21 6 7.4415 -9.4300 -1.9984 22 7 7.2657 -10.7337 -1.9895 23 6 6.0625 -11.2856 -1.9872 24 6 4.9259 -10.5272 -1.9945 25 6 5.0403 -9.1375 -2.0041 26 7 4.1428 -8.1041 -2.0134 27 1 3.1771 -8.1952 -2.0143 28 6 2.4136 -4.0354 -1.4528 29 1 -0.4851 0.8400 0.0041 30 1 0.3556 -2.3881 -0.0021 31 1 0.9088 -4.4756 1.6163 32 1 0.2814 -4.8754 -0.0006 33 1 2.8748 -5.9457 1.2024 34 1 1.3453 -6.8485 1.0805 35 1 2.9512 -7.3634 -0.7929 36 1 1.4014 -6.6968 -1.3647 37 1 6.9648 -6.4360 -2.0304 38 1 8.4408 -9.0202 -2.0004 39 1 5.9772 -12.3621 -1.9801 40 1 3.9536 -10.9971 -1.9929 41 1 1.5088 -4.0516 -2.0601 42 1 3.1160 -3.3076 -1.8592 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999500436.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:04 Heat of formation + Delta-G solvation = 64.560148 kcal Electronic energy + Delta-G solvation = -25580.579151 eV Core-core repulsion = 21947.948766 eV Total energy + Delta-G solvation = -3632.630385 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.25046 -40.00041 -38.19277 -37.42252 -34.65941 -32.75714 -32.47887 -31.47264 -30.91407 -29.62956 -28.39677 -25.97563 -24.44082 -23.77255 -23.01429 -22.03402 -21.62238 -20.47905 -19.64379 -18.19085 -17.79492 -17.16452 -16.21444 -15.96346 -15.56856 -15.54297 -14.88536 -14.84698 -14.56115 -14.34147 -14.24501 -13.75091 -13.64131 -13.44544 -13.36504 -13.05354 -12.90627 -12.57015 -12.34311 -11.80803 -11.48081 -11.16380 -10.91238 -10.77540 -10.70990 -10.38842 -10.27296 -10.13882 -9.93715 -9.82667 -9.73377 -9.18243 -9.10540 -8.58662 -8.22867 -7.08149 -5.84729 -3.15246 0.38928 1.22571 1.83965 2.43022 2.82353 3.21135 3.41773 3.47453 3.48766 3.64661 4.15980 4.23974 4.29493 4.49702 4.61282 4.64883 4.78758 4.86669 4.96700 5.02333 5.12648 5.29774 5.38142 5.42509 5.44405 5.54363 5.66350 5.68628 5.79105 5.86183 6.00785 6.05073 6.09554 6.20970 6.23307 6.33811 6.47756 6.55709 6.69847 6.85127 6.90846 7.36629 7.66127 7.79719 8.06084 8.33023 9.45182 9.97624 10.32841 11.37318 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027310 B = 0.002851 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.012099 B = 9817.302926 C =10514.576170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.246 4.246 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.169 3.831 11 H 0.053 0.947 12 C -0.127 4.127 13 C -0.128 4.128 14 C 0.085 3.915 15 N -0.598 5.598 16 C 0.575 3.425 17 O -0.517 6.517 18 C 0.032 3.968 19 C -0.100 4.100 20 C -0.170 4.170 21 C 0.176 3.824 22 N -0.507 5.507 23 C 0.102 3.898 24 C -0.180 4.180 25 C 0.132 3.868 26 N -0.571 5.571 27 H 0.425 0.575 28 C 0.092 3.908 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.161 0.839 38 H 0.162 0.838 39 H 0.156 0.844 40 H 0.132 0.868 41 H 0.065 0.935 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.793 -23.321 -2.214 24.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.206 4.206 3 Si 0.739 3.261 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.357 5.357 10 C 0.057 3.943 11 H 0.071 0.929 12 C -0.165 4.165 13 C -0.166 4.166 14 C -0.039 4.039 15 N -0.331 5.331 16 C 0.361 3.639 17 O -0.392 6.392 18 C -0.077 4.077 19 C -0.128 4.128 20 C -0.177 4.177 21 C 0.008 3.992 22 N -0.217 5.217 23 C -0.046 4.046 24 C -0.203 4.203 25 C 0.015 3.985 26 N -0.181 5.181 27 H 0.269 0.731 28 C -0.032 4.032 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.091 0.909 37 H 0.179 0.821 38 H 0.179 0.821 39 H 0.174 0.826 40 H 0.150 0.850 41 H 0.084 0.916 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.676 -23.186 -2.483 24.550 hybrid contribution -1.331 1.370 -0.042 1.910 sum 6.345 -21.816 -2.525 22.860 Atomic orbital electron populations 1.69659 1.05155 1.25879 1.57248 1.24755 0.95527 0.97830 1.02450 0.86177 0.78729 0.83569 0.77671 1.21532 1.21728 1.20605 1.19268 0.91133 0.83905 1.43339 0.90965 1.42370 1.05810 0.99528 1.88027 1.20485 0.95084 0.86542 0.92180 0.92931 1.21839 0.98655 0.93900 1.02100 1.21854 1.01214 0.98496 0.95078 1.22225 0.97035 0.89569 0.95047 1.48267 1.18472 1.11597 1.54813 1.17270 0.81139 0.86022 0.79489 1.90880 1.61406 1.42074 1.44815 1.20421 0.92274 0.85343 1.09627 1.20856 0.94339 0.94008 1.03573 1.19230 0.93908 0.94504 1.10106 1.22526 0.97713 0.87725 0.91211 1.67666 1.25937 1.12790 1.15312 1.22082 0.86785 1.00140 0.95588 1.20788 1.01173 0.89764 1.08570 1.18456 0.89576 0.90018 1.00458 1.42698 1.08634 1.03821 1.62974 0.73128 1.22938 0.97939 0.80813 1.01534 0.93397 0.78028 0.91119 0.91942 0.91321 0.90817 0.89977 0.90912 0.82120 0.82126 0.82629 0.84980 0.91645 0.88704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.53 13.06 55.49 0.72 -26.81 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 4 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.25 -6.69 9.93 -15.06 -0.15 -6.84 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.72 -17.22 5.12 -53.31 -0.27 -17.49 16 10 C 0.17 3.18 2.92 -67.82 -0.20 2.98 16 11 H 0.05 1.07 8.08 -51.92 -0.42 0.65 16 12 C -0.13 -1.85 5.35 -26.69 -0.14 -1.99 16 13 C -0.13 -1.40 6.08 -26.61 -0.16 -1.56 16 14 C 0.08 0.87 5.52 -3.71 -0.02 0.85 16 15 N -0.60 -8.55 2.97 -174.17 -0.52 -9.07 16 16 C 0.57 8.84 7.62 -12.67 -0.10 8.74 16 17 O -0.52 -9.97 16.39 5.24 0.09 -9.89 16 18 C 0.03 0.39 6.28 -82.22 -0.52 -0.12 16 19 C -0.10 -1.17 10.65 -39.20 -0.42 -1.59 16 20 C -0.17 -1.82 6.21 -106.95 -0.66 -2.49 16 21 C 0.18 1.71 11.29 -17.07 -0.19 1.51 16 22 N -0.51 -5.22 10.33 -13.18 -0.14 -5.36 16 23 C 0.10 0.85 11.09 -17.90 -0.20 0.65 16 24 C -0.18 -1.43 10.09 -39.71 -0.40 -1.83 16 25 C 0.13 1.30 7.32 -84.03 -0.62 0.69 16 26 N -0.57 -5.39 4.76 -7.31 -0.03 -5.43 16 27 H 0.42 3.00 6.48 -40.82 -0.26 2.73 16 28 C 0.09 1.63 6.02 -3.72 -0.02 1.61 16 29 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 30 H 0.39 9.75 7.80 -40.82 -0.32 9.43 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.69 3.91 -51.93 -0.20 0.49 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.16 1.71 8.06 -52.48 -0.42 1.29 16 38 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 40 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.99 7.00 -51.93 -0.36 1.63 16 LS Contribution 345.88 15.07 5.21 5.21 Total: -1.00 -33.05 345.88 -9.20 -42.25 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -5.34 Total: 8.99 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: -3.89 Total: 0.26 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.24 Total: -64.15 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.89 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.05 -9.20 -42.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999500436.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.813 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds