Wall clock time and date at job start Fri Apr 10 2020 23:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99681 * 2 1 4 4 H 1.48500 * 109.46757 * 269.99836 * 3 2 1 5 5 H 1.48498 * 109.46944 * 29.99856 * 3 2 1 6 6 H 1.48499 * 109.47019 * 149.99766 * 3 2 1 7 7 C 1.38811 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99991 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00215 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00127 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.50051 * 325.06429 * 10 9 7 12 12 C 1.53043 * 109.49569 * 204.99849 * 10 9 7 13 13 C 1.53046 * 109.53661 * 178.65169 * 12 10 9 14 14 C 1.53189 * 109.33768 * 61.34936 * 13 12 10 15 15 N 1.46928 * 108.77265 * 305.41512 * 14 13 12 16 16 C 1.34779 * 120.60675 * 233.57673 * 15 14 13 17 17 O 1.21771 * 120.00416 * 172.90547 * 16 15 14 18 18 C 1.41820 * 119.99604 * 352.91299 * 16 15 14 19 19 C 1.38518 * 126.78560 * 334.41906 * 18 16 15 20 20 N 1.32331 * 108.21394 * 179.97438 * 19 18 16 21 21 C 1.33196 * 109.81531 * 0.02562 * 20 19 18 22 22 C 1.40659 * 131.81562 * 180.02562 * 21 20 19 23 23 C 1.36286 * 119.37765 * 179.34626 * 22 21 20 24 24 C 1.40183 * 119.61162 * 0.51941 * 23 22 21 25 25 C 1.35261 * 120.12198 * 359.67055 * 24 23 22 26 26 N 1.35948 * 120.64323 * 0.02562 * 25 24 23 27 27 C 1.46921 * 118.76718 * 53.55859 * 15 14 13 28 28 H 0.96996 * 120.00370 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99634 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.45996 * 58.63344 * 12 10 9 31 31 H 1.09003 * 109.46272 * 298.66911 * 12 10 9 32 32 H 1.08995 * 109.49722 * 181.32291 * 13 12 10 33 33 H 1.09001 * 109.49340 * 301.38060 * 13 12 10 34 34 H 1.08995 * 109.58630 * 65.16978 * 14 13 12 35 35 H 1.08999 * 109.58301 * 185.59282 * 14 13 12 36 36 H 1.08001 * 125.89441 * 359.96978 * 19 18 16 37 37 H 1.07997 * 120.30849 * 359.96873 * 22 21 20 38 38 H 1.08000 * 120.19420 * 180.14761 * 23 22 21 39 39 H 1.08000 * 119.93535 * 179.64733 * 24 23 22 40 40 H 1.08000 * 119.67235 * 179.97438 * 25 24 23 41 41 H 1.09008 * 109.58966 * 186.62446 * 27 15 14 42 42 H 1.08999 * 109.70795 * 66.26429 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3258 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9697 -3.5506 -0.5878 12 6 1.1814 -4.7529 -0.6091 13 6 1.9580 -6.0713 -0.6404 14 6 2.3193 -6.4812 0.7907 15 7 3.0376 -5.3722 1.4332 16 6 4.2408 -5.5741 2.0060 17 8 4.8846 -4.6272 2.4203 18 6 4.7571 -6.8895 2.1260 19 6 4.0269 -8.0653 2.1819 20 7 4.8757 -9.0744 2.2929 21 6 6.1252 -8.6134 2.3127 22 6 7.3654 -9.2693 2.4141 23 6 8.5134 -8.5351 2.3960 24 6 8.4414 -7.1393 2.2878 25 6 7.2390 -6.5268 2.1953 26 7 6.0892 -7.2521 2.2064 27 6 2.4201 -4.0390 1.4392 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3881 -0.0002 30 1 0.9022 -4.4717 -1.6245 31 1 0.2817 -4.8756 -0.0061 32 1 1.3414 -6.8460 -1.0962 33 1 2.8700 -5.9425 -1.2233 34 1 1.4091 -6.6988 1.3493 35 1 2.9565 -7.3653 0.7676 36 1 2.9506 -8.1448 2.1418 37 1 7.4078 -10.3454 2.4954 38 1 9.4729 -9.0253 2.4705 39 1 9.3477 -6.5520 2.2787 40 1 7.1919 -5.4510 2.1127 41 1 3.1240 -3.3120 1.8445 42 1 1.5181 -4.0546 2.0510 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999540722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:06 Heat of formation + Delta-G solvation = 84.686664 kcal Electronic energy + Delta-G solvation = -25938.576220 eV Core-core repulsion = 22306.818587 eV Total energy + Delta-G solvation = -3631.757634 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.19266 -39.88641 -37.68178 -37.31777 -34.57221 -33.88141 -32.43695 -31.31676 -30.66237 -29.68095 -28.00526 -25.69735 -24.45697 -23.80416 -23.18365 -22.53634 -21.76682 -20.55204 -19.37887 -17.56702 -17.24546 -17.12666 -16.99062 -16.40276 -15.84583 -15.53324 -15.02289 -14.88905 -14.59411 -14.34992 -13.90037 -13.67672 -13.52552 -13.36787 -12.81693 -12.73168 -12.42248 -12.39805 -12.22559 -12.08246 -11.31737 -11.31288 -11.03413 -10.85392 -10.67557 -10.62715 -10.52229 -10.21439 -9.86319 -9.84284 -9.65644 -9.13378 -9.09835 -8.46050 -8.08222 -7.01644 -5.80036 -3.09901 0.41421 0.60445 2.02543 2.19717 3.16170 3.21663 3.35749 3.43784 3.49203 3.51426 3.85295 4.19094 4.44691 4.51830 4.56957 4.69321 4.77880 4.91342 4.99250 5.09331 5.16815 5.26037 5.44649 5.47669 5.52423 5.62391 5.63661 5.77115 5.79350 5.89626 6.01459 6.12212 6.15943 6.16277 6.21363 6.33951 6.46844 6.67075 6.70752 6.81139 6.98403 7.43165 7.56259 7.70401 8.25835 8.38285 9.49997 10.03793 10.39198 11.42189 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019877 B = 0.003314 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.316925 B = 8447.091630 C = 9519.695108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.127 4.127 13 C -0.129 4.129 14 C 0.086 3.914 15 N -0.592 5.592 16 C 0.589 3.411 17 O -0.551 6.551 18 C -0.131 4.131 19 C 0.093 3.907 20 N -0.496 5.496 21 C 0.237 3.763 22 C -0.091 4.091 23 C -0.088 4.088 24 C -0.147 4.147 25 C 0.077 3.923 26 N -0.323 5.323 27 C 0.095 3.905 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.199 0.801 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.156 0.844 40 H 0.174 0.826 41 H 0.092 0.908 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.805 -21.148 2.957 24.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.167 4.167 14 C -0.037 4.037 15 N -0.324 5.324 16 C 0.378 3.622 17 O -0.431 6.431 18 C -0.245 4.245 19 C -0.066 4.066 20 N -0.215 5.215 21 C -0.003 4.003 22 C -0.111 4.111 23 C -0.113 4.113 24 C -0.167 4.167 25 C -0.047 4.047 26 N 0.007 4.993 27 C -0.029 4.029 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.216 0.784 37 H 0.172 0.828 38 H 0.164 0.836 39 H 0.173 0.827 40 H 0.192 0.808 41 H 0.110 0.890 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 12.993 -21.206 3.208 25.076 hybrid contribution 0.248 1.844 0.006 1.860 sum 13.241 -19.363 3.215 23.676 Atomic orbital electron populations 1.69658 1.05116 1.25793 1.57427 1.24746 0.95513 0.97745 1.02638 0.86193 0.78813 0.83717 0.77538 1.21668 1.21710 1.20614 1.19269 0.91095 0.83978 1.43057 0.91066 1.42375 1.05815 0.99557 1.88062 1.20481 0.94944 0.86491 0.92307 0.93168 1.21838 0.98701 0.94071 1.01883 1.21874 1.00900 0.98271 0.95703 1.22377 0.97212 0.89975 0.94151 1.47964 1.18374 1.11499 1.54585 1.15506 0.81798 0.85992 0.78856 1.90834 1.58402 1.43447 1.50405 1.20021 0.81992 0.97418 1.25084 1.23485 1.00114 0.86062 0.96943 1.70528 0.97118 1.30694 1.23186 1.21107 0.95382 0.79733 1.04073 1.20329 0.87367 1.01181 1.02198 1.21162 0.98823 0.93565 0.97718 1.20954 0.96806 0.95409 1.03547 1.22029 0.83408 0.99368 0.99929 1.42443 1.05632 1.08803 1.42407 1.22844 0.97764 0.80990 1.01329 0.93440 0.78024 0.91363 0.91896 0.90775 0.91712 0.90835 0.88806 0.78435 0.82768 0.83611 0.82680 0.80844 0.88999 0.91689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.93 13.06 55.49 0.72 -27.21 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 7 C -0.24 -6.76 9.93 -15.06 -0.15 -6.91 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.72 -17.71 5.13 -53.31 -0.27 -17.98 16 10 C 0.17 3.34 2.92 -67.81 -0.20 3.14 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.13 -1.96 5.35 -26.69 -0.14 -2.11 16 13 C -0.13 -1.56 6.08 -26.61 -0.16 -1.72 16 14 C 0.09 1.00 5.05 -3.71 -0.02 0.98 16 15 N -0.59 -9.24 2.97 -176.10 -0.52 -9.76 16 16 C 0.59 9.94 7.42 -14.89 -0.11 9.83 16 17 O -0.55 -11.14 15.26 5.13 0.08 -11.06 16 18 C -0.13 -1.88 6.35 -83.48 -0.53 -2.42 16 19 C 0.09 1.15 9.41 -17.23 -0.16 0.99 16 20 N -0.50 -6.52 11.25 -12.27 -0.14 -6.65 16 21 C 0.24 2.91 7.77 -156.06 -1.21 1.70 16 22 C -0.09 -0.77 10.10 -39.37 -0.40 -1.17 16 23 C -0.09 -0.58 10.07 -39.55 -0.40 -0.98 16 24 C -0.15 -1.11 10.00 -39.91 -0.40 -1.51 16 25 C 0.08 0.86 10.55 -16.79 -0.18 0.68 16 26 N -0.32 -4.30 2.96 -60.15 -0.18 -4.48 16 27 C 0.09 1.78 6.03 -3.71 -0.02 1.76 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.39 9.99 7.80 -40.82 -0.32 9.67 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.09 0.96 4.02 -51.93 -0.21 0.76 16 36 H 0.20 1.85 6.04 -52.49 -0.32 1.54 16 37 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 38 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.17 2.05 7.19 -52.49 -0.38 1.67 16 41 H 0.09 2.02 7.00 -51.92 -0.36 1.66 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 343.32 15.07 5.17 5.17 Total: -1.00 -34.53 343.32 -9.69 -44.22 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -5.36 Total: 8.29 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: -4.18 Total: 1.88 kcal Atomic # 7 Polarization: -65.69 SS G_CDS: -0.39 Total: -66.08 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: 0.08 Total: -11.06 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -34.53 -9.69 -44.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999540722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.908 kcal (2) G-P(sol) polarization free energy of solvation -34.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds