Wall clock time and date at job start Fri Apr 10 2020 23:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86804 * 119.99681 * 2 1 4 4 H 1.48500 * 109.46757 * 269.99836 * 3 2 1 5 5 H 1.48498 * 109.46944 * 29.99856 * 3 2 1 6 6 H 1.48499 * 109.47019 * 149.99766 * 3 2 1 7 7 C 1.38811 * 120.00263 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99991 * 180.02562 * 7 2 1 9 9 N 1.36935 * 120.00215 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00127 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.50051 * 325.06429 * 10 9 7 12 12 C 1.53043 * 109.49569 * 204.99849 * 10 9 7 13 13 C 1.53046 * 109.53661 * 178.65169 * 12 10 9 14 14 C 1.53189 * 109.33768 * 61.34936 * 13 12 10 15 15 N 1.46928 * 108.77265 * 305.41512 * 14 13 12 16 16 C 1.34779 * 120.60675 * 233.57673 * 15 14 13 17 17 O 1.21771 * 120.00416 * 172.90547 * 16 15 14 18 18 C 1.41820 * 119.99604 * 352.91299 * 16 15 14 19 19 C 1.38518 * 126.78560 * 334.41906 * 18 16 15 20 20 N 1.32331 * 108.21394 * 179.97438 * 19 18 16 21 21 C 1.33196 * 109.81531 * 0.02562 * 20 19 18 22 22 C 1.40659 * 131.81562 * 180.02562 * 21 20 19 23 23 C 1.36286 * 119.37765 * 179.34626 * 22 21 20 24 24 C 1.40183 * 119.61162 * 0.51941 * 23 22 21 25 25 C 1.35261 * 120.12198 * 359.67055 * 24 23 22 26 26 N 1.35948 * 120.64323 * 0.02562 * 25 24 23 27 27 C 1.46921 * 118.76718 * 53.55859 * 15 14 13 28 28 H 0.96996 * 120.00370 * 0.02562 * 1 2 3 29 29 H 0.97005 * 119.99634 * 0.02562 * 9 7 2 30 30 H 1.08993 * 109.45996 * 58.63344 * 12 10 9 31 31 H 1.09003 * 109.46272 * 298.66911 * 12 10 9 32 32 H 1.08995 * 109.49722 * 181.32291 * 13 12 10 33 33 H 1.09001 * 109.49340 * 301.38060 * 13 12 10 34 34 H 1.08995 * 109.58630 * 65.16978 * 14 13 12 35 35 H 1.08999 * 109.58301 * 185.59282 * 14 13 12 36 36 H 1.08001 * 125.89441 * 359.96978 * 19 18 16 37 37 H 1.07997 * 120.30849 * 359.96873 * 22 21 20 38 38 H 1.08000 * 120.19420 * 180.14761 * 23 22 21 39 39 H 1.08000 * 119.93535 * 179.64733 * 24 23 22 40 40 H 1.08000 * 119.67235 * 179.97438 * 25 24 23 41 41 H 1.09008 * 109.58966 * 186.62446 * 27 15 14 42 42 H 1.08999 * 109.70795 * 66.26429 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3258 -2.3881 0.0005 10 6 2.0583 -3.6567 0.0005 11 1 2.9697 -3.5506 -0.5878 12 6 1.1814 -4.7529 -0.6091 13 6 1.9580 -6.0713 -0.6404 14 6 2.3193 -6.4812 0.7907 15 7 3.0376 -5.3722 1.4332 16 6 4.2408 -5.5741 2.0060 17 8 4.8846 -4.6272 2.4203 18 6 4.7571 -6.8895 2.1260 19 6 4.0269 -8.0653 2.1819 20 7 4.8757 -9.0744 2.2929 21 6 6.1252 -8.6134 2.3127 22 6 7.3654 -9.2693 2.4141 23 6 8.5134 -8.5351 2.3960 24 6 8.4414 -7.1393 2.2878 25 6 7.2390 -6.5268 2.1953 26 7 6.0892 -7.2521 2.2064 27 6 2.4201 -4.0390 1.4392 28 1 -0.4850 0.8400 -0.0004 29 1 0.3557 -2.3881 -0.0002 30 1 0.9022 -4.4717 -1.6245 31 1 0.2817 -4.8756 -0.0061 32 1 1.3414 -6.8460 -1.0962 33 1 2.8700 -5.9425 -1.2233 34 1 1.4091 -6.6988 1.3493 35 1 2.9565 -7.3653 0.7676 36 1 2.9506 -8.1448 2.1418 37 1 7.4078 -10.3454 2.4954 38 1 9.4729 -9.0253 2.4705 39 1 9.3477 -6.5520 2.2787 40 1 7.1919 -5.4510 2.1127 41 1 3.1240 -3.3120 1.8445 42 1 1.5181 -4.0546 2.0510 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999540722.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:06 Heat of formation + Delta-G solvation = 61.844293 kcal Electronic energy + Delta-G solvation = -25939.566740 eV Core-core repulsion = 22306.818587 eV Total energy + Delta-G solvation = -3632.748153 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.07234 -41.14507 -38.72166 -38.48168 -36.28377 -34.69007 -34.06473 -32.80216 -31.68840 -30.77328 -29.47532 -26.88817 -25.99863 -24.97734 -24.18197 -23.59541 -22.99662 -21.84659 -20.63447 -19.18830 -18.63159 -18.17709 -17.83906 -17.38210 -17.02720 -16.54778 -16.46231 -16.07455 -15.75694 -15.56266 -15.47598 -15.12015 -14.91669 -14.69387 -14.07574 -13.99940 -13.65532 -13.34475 -13.15134 -12.96641 -12.93891 -12.86883 -12.52633 -12.23919 -12.07217 -11.98339 -11.91647 -11.73967 -11.51546 -11.37561 -11.14210 -11.00246 -9.99436 -9.84080 -9.09104 -8.94448 -8.00538 -5.29873 -0.35262 -0.21185 1.09723 1.28942 1.42863 1.44155 1.53072 2.04751 2.16415 2.45463 2.51895 3.07867 3.32225 3.39161 3.55487 3.71546 3.80695 3.90713 3.97161 4.04610 4.11049 4.15598 4.19962 4.31581 4.36239 4.54122 4.58201 4.68671 4.78277 4.84663 4.87812 5.01112 5.02497 5.11130 5.13120 5.28860 5.35679 5.40694 5.42813 5.47432 5.54494 5.85017 6.22157 6.31180 6.53453 6.99658 7.28973 8.00573 8.26747 9.22024 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019877 B = 0.003314 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.316925 B = 8447.091630 C = 9519.695108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.968 3.032 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.247 4.247 8 H 0.063 0.937 9 N -0.728 5.728 10 C 0.168 3.832 11 H 0.027 0.973 12 C -0.117 4.117 13 C -0.120 4.120 14 C 0.082 3.918 15 N -0.591 5.591 16 C 0.587 3.413 17 O -0.602 6.602 18 C -0.174 4.174 19 C 0.110 3.890 20 N -0.517 5.517 21 C 0.227 3.773 22 C -0.099 4.099 23 C -0.067 4.067 24 C -0.119 4.119 25 C 0.032 3.968 26 N -0.331 5.331 27 C 0.111 3.889 28 H 0.254 0.746 29 H 0.379 0.621 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.115 0.885 33 H 0.054 0.946 34 H 0.102 0.898 35 H 0.114 0.886 36 H 0.225 0.775 37 H 0.182 0.818 38 H 0.195 0.805 39 H 0.190 0.810 40 H 0.153 0.847 41 H 0.049 0.951 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.612 -24.374 2.879 28.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.378 4.378 8 H 0.081 0.919 9 N -0.368 5.368 10 C 0.059 3.941 11 H 0.045 0.955 12 C -0.156 4.156 13 C -0.158 4.158 14 C -0.039 4.039 15 N -0.322 5.322 16 C 0.379 3.621 17 O -0.485 6.485 18 C -0.288 4.288 19 C -0.050 4.050 20 N -0.236 5.236 21 C -0.012 4.012 22 C -0.119 4.119 23 C -0.091 4.091 24 C -0.138 4.138 25 C -0.092 4.092 26 N 0.000 5.000 27 C -0.014 4.014 28 H 0.062 0.938 29 H 0.212 0.788 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.120 0.880 35 H 0.132 0.868 36 H 0.242 0.758 37 H 0.200 0.800 38 H 0.212 0.788 39 H 0.207 0.793 40 H 0.170 0.830 41 H 0.068 0.932 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 14.824 -24.493 3.115 28.799 hybrid contribution -0.086 2.706 0.053 2.708 sum 14.738 -21.787 3.167 26.494 Atomic orbital electron populations 1.69785 1.06282 1.26229 1.58971 1.25477 0.96400 1.00758 1.03292 0.85232 0.77614 0.79873 0.77609 1.20995 1.21626 1.20296 1.19498 0.90980 0.85514 1.41850 0.91867 1.42487 1.05550 1.00490 1.88276 1.20626 0.94559 0.86213 0.92748 0.95505 1.21745 0.98569 0.94157 1.01106 1.21864 1.00601 0.97204 0.96152 1.22722 0.98284 0.89010 0.93837 1.47922 1.18415 1.11105 1.54759 1.15868 0.81546 0.86673 0.78013 1.90790 1.59796 1.45232 1.52723 1.19712 0.83307 0.96526 1.29256 1.23869 1.01140 0.84998 0.95030 1.70554 0.97688 1.30830 1.24568 1.21821 0.96522 0.79486 1.03395 1.20864 0.86392 1.02731 1.01874 1.21744 1.00200 0.92717 0.94391 1.21510 0.96351 0.96544 0.99433 1.22184 0.84424 0.99054 1.03549 1.42553 1.05604 1.09411 1.42403 1.22273 0.96748 0.82265 1.00122 0.93759 0.78849 0.91962 0.90812 0.86706 0.92710 0.88004 0.86832 0.75850 0.80049 0.78812 0.79259 0.82983 0.93234 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.12 13.06 21.65 0.28 -58.84 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.97 47.66 29.55 68.60 2.03 49.69 16 4 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 7 C -0.25 -14.27 9.93 84.03 0.83 -13.43 16 8 H 0.06 3.68 7.83 -2.91 -0.02 3.65 16 9 N -0.73 -37.41 5.13 -322.57 -1.65 -39.06 16 10 C 0.17 6.92 2.92 45.07 0.13 7.05 16 11 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 12 C -0.12 -3.58 5.35 30.62 0.16 -3.41 16 13 C -0.12 -2.65 6.08 30.67 0.19 -2.46 16 14 C 0.08 1.76 5.05 86.36 0.44 2.20 16 15 N -0.59 -18.91 2.97 -829.25 -2.46 -21.38 16 16 C 0.59 20.91 7.42 85.13 0.63 21.54 16 17 O -0.60 -26.49 15.26 -4.58 -0.07 -26.56 16 18 C -0.17 -5.12 6.35 39.08 0.25 -4.88 16 19 C 0.11 2.60 9.41 84.68 0.80 3.40 16 20 N -0.52 -12.76 11.25 -192.73 -2.17 -14.93 16 21 C 0.23 5.21 7.77 134.00 1.04 6.25 16 22 C -0.10 -1.34 10.10 22.41 0.23 -1.11 16 23 C -0.07 -0.56 10.07 22.29 0.22 -0.34 16 24 C -0.12 -1.45 10.00 22.06 0.22 -1.23 16 25 C 0.03 0.73 10.55 83.37 0.88 1.61 16 26 N -0.33 -8.81 2.96 -344.20 -1.02 -9.83 16 27 C 0.11 4.41 6.03 86.36 0.52 4.93 16 28 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 29 H 0.38 20.29 7.80 -92.70 -0.72 19.57 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.11 1.72 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.11 2.07 4.02 -2.39 -0.01 2.06 16 36 H 0.23 3.66 6.04 -2.91 -0.02 3.64 16 37 H 0.18 1.42 8.06 -2.91 -0.02 1.39 16 38 H 0.19 -0.14 8.06 -2.91 -0.02 -0.16 16 39 H 0.19 0.95 8.06 -2.91 -0.02 0.93 16 40 H 0.15 3.98 7.19 -2.91 -0.02 3.95 16 41 H 0.05 2.37 7.00 -2.38 -0.02 2.35 16 42 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 Total: -1.00 -81.26 343.32 2.28 -78.98 By element: Atomic # 1 Polarization: 24.90 SS G_CDS: 0.33 Total: 25.24 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 7.01 Total: 16.69 kcal Atomic # 7 Polarization: -137.01 SS G_CDS: -7.02 Total: -144.03 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.07 Total: -26.56 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -81.26 2.28 -78.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999540722.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.825 kcal (2) G-P(sol) polarization free energy of solvation -81.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds