Wall clock time and date at job start Fri Apr 10 2020 23:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47029 * 270.27494 * 3 2 1 5 5 H 1.48500 * 109.47025 * 30.27013 * 3 2 1 6 6 H 1.48490 * 109.47198 * 150.26965 * 3 2 1 7 7 C 1.38814 * 119.99739 * 180.27134 * 2 1 3 8 8 H 1.07991 * 120.00238 * 359.73033 * 7 2 1 9 9 N 1.36936 * 119.99884 * 179.72859 * 7 2 1 10 10 C 1.46491 * 120.00156 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49980 * 34.93388 * 10 9 7 12 12 C 1.53041 * 109.49956 * 154.99801 * 10 9 7 13 13 C 1.53041 * 109.53841 * 181.31616 * 12 10 9 14 14 C 1.53190 * 109.31572 * 298.63431 * 13 12 10 15 15 N 1.46931 * 108.77425 * 54.63645 * 14 13 12 16 16 C 1.34769 * 120.63365 * 126.41171 * 15 14 13 17 17 O 1.21775 * 120.00421 * 181.39107 * 16 15 14 18 18 C 1.41812 * 120.00067 * 1.39370 * 16 15 14 19 19 C 1.38532 * 126.78479 * 29.23114 * 18 16 15 20 20 N 1.32332 * 108.21605 * 180.02562 * 19 18 16 21 21 C 1.33206 * 109.81194 * 0.02562 * 20 19 18 22 22 C 1.40651 * 131.81675 * 180.02562 * 21 20 19 23 23 C 1.36286 * 119.38309 * 179.20495 * 22 21 20 24 24 C 1.40174 * 119.60862 * 0.64019 * 23 22 21 25 25 C 1.35258 * 120.12465 * 359.57080 * 24 23 22 26 26 N 1.35955 * 120.63798 * 0.03118 * 25 24 23 27 27 C 1.46931 * 118.73429 * 306.39155 * 15 14 13 28 28 H 0.97000 * 120.00087 * 359.73308 * 1 2 3 29 29 H 0.97001 * 120.00077 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46219 * 301.33826 * 12 10 9 31 31 H 1.08999 * 109.46159 * 61.30996 * 12 10 9 32 32 H 1.08998 * 109.49699 * 58.59195 * 13 12 10 33 33 H 1.09008 * 109.49735 * 178.68196 * 13 12 10 34 34 H 1.08995 * 109.58712 * 174.41890 * 14 13 12 35 35 H 1.09002 * 109.58462 * 294.85199 * 14 13 12 36 36 H 1.07999 * 125.89081 * 359.97078 * 19 18 16 37 37 H 1.08000 * 120.30601 * 359.94739 * 22 21 20 38 38 H 1.08002 * 120.19769 * 180.21191 * 23 22 21 39 39 H 1.08000 * 119.93869 * 179.59816 * 24 23 22 40 40 H 1.08002 * 119.68239 * 179.97438 * 25 24 23 41 41 H 1.08994 * 109.58881 * 293.82146 * 27 15 14 42 42 H 1.09003 * 109.58437 * 173.39204 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4919 2.0497 -1.4001 5 1 1.4506 2.6510 0.7057 6 1 3.5505 1.4385 0.6943 7 6 2.0102 -1.2022 -0.0057 8 1 1.4702 -2.1374 -0.0057 9 7 3.3795 -1.2022 -0.0113 10 6 4.1120 -2.4708 -0.0179 11 1 3.5620 -3.2054 -0.6061 12 6 5.4972 -2.2578 -0.6327 13 6 6.2509 -3.5892 -0.6701 14 6 6.4313 -4.1096 0.7594 15 7 5.1142 -4.1798 1.4068 16 6 4.6903 -5.3240 1.9790 17 8 3.5863 -5.3767 2.4902 18 6 5.5300 -6.4668 1.9859 19 6 6.9153 -6.4783 1.9910 20 7 7.3185 -7.7387 1.9961 21 6 6.2624 -8.5506 1.9940 22 6 6.1578 -9.9532 1.9978 23 6 4.9239 -10.5316 2.0106 24 6 3.7794 -9.7222 2.0062 25 6 3.9008 -8.3751 1.9980 26 7 5.1280 -7.7900 1.9934 27 6 4.2682 -2.9786 1.4190 28 1 -0.4850 0.8400 0.0039 29 1 3.8646 -0.3622 -0.0117 30 1 5.3892 -1.8731 -1.6468 31 1 6.0557 -1.5414 -0.0302 32 1 5.6810 -4.3136 -1.2518 33 1 7.2283 -3.4412 -1.1294 34 1 6.8787 -5.1032 0.7328 35 1 7.0767 -3.4307 1.3167 36 1 7.5557 -5.6087 1.9901 37 1 7.0471 -10.5660 2.0027 38 1 4.8283 -11.6074 2.0172 39 1 2.7990 -10.1751 2.0097 40 1 3.0142 -7.7583 1.9942 41 1 4.7372 -2.2075 2.0300 42 1 3.2883 -3.2259 1.8275 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999540723.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:09 Heat of formation + Delta-G solvation = 91.062775 kcal Electronic energy + Delta-G solvation = -25995.465171 eV Core-core repulsion = 22363.984027 eV Total energy + Delta-G solvation = -3631.481145 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.20366 -39.94320 -37.69185 -37.41386 -34.72633 -33.88921 -32.46302 -31.43602 -30.76546 -29.83004 -28.38690 -25.76506 -24.49427 -23.69067 -23.19710 -22.51470 -21.65626 -20.62697 -19.50143 -17.61694 -17.57442 -17.24572 -17.04602 -16.40698 -15.85776 -15.57097 -15.04489 -14.86455 -14.68708 -14.46564 -13.97408 -13.80658 -13.69000 -13.15587 -12.80564 -12.71594 -12.60144 -12.48677 -12.22866 -12.19550 -11.53578 -11.32314 -11.22237 -10.94874 -10.74793 -10.68798 -10.54683 -10.32440 -9.92784 -9.83302 -9.60889 -9.14165 -9.13743 -8.51354 -8.09770 -7.32582 -5.79618 -3.17180 0.41530 0.60942 2.00014 2.19777 3.13120 3.19425 3.31981 3.35119 3.37386 3.43727 3.84499 4.18415 4.44244 4.52229 4.55808 4.67681 4.75595 4.80673 4.94620 5.03396 5.14266 5.19178 5.32431 5.42786 5.44795 5.50227 5.64137 5.69467 5.76605 5.78604 5.86985 5.99867 6.05546 6.12799 6.14377 6.22628 6.35297 6.60682 6.66480 6.69233 6.86413 7.41894 7.51049 7.95900 8.22984 8.39113 9.16117 9.87733 10.06180 11.38371 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023109 B = 0.003289 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.358520 B = 8511.201785 C = 9341.568235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.091 0.909 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.059 0.941 12 C -0.130 4.130 13 C -0.128 4.128 14 C 0.081 3.919 15 N -0.592 5.592 16 C 0.590 3.410 17 O -0.547 6.547 18 C -0.130 4.130 19 C 0.090 3.910 20 N -0.496 5.496 21 C 0.237 3.763 22 C -0.091 4.091 23 C -0.088 4.088 24 C -0.146 4.146 25 C 0.077 3.923 26 N -0.323 5.323 27 C 0.095 3.905 28 H 0.260 0.740 29 H 0.363 0.637 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.200 0.800 37 H 0.155 0.845 38 H 0.146 0.854 39 H 0.156 0.844 40 H 0.174 0.826 41 H 0.063 0.937 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.108 -19.393 2.252 25.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.189 4.189 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.379 4.379 8 H 0.109 0.891 9 N -0.384 5.384 10 C 0.063 3.937 11 H 0.077 0.923 12 C -0.169 4.169 13 C -0.167 4.167 14 C -0.042 4.042 15 N -0.324 5.324 16 C 0.378 3.622 17 O -0.426 6.426 18 C -0.244 4.244 19 C -0.069 4.069 20 N -0.215 5.215 21 C -0.003 4.003 22 C -0.111 4.111 23 C -0.112 4.112 24 C -0.166 4.166 25 C -0.048 4.048 26 N 0.008 4.992 27 C -0.029 4.029 28 H 0.070 0.930 29 H 0.196 0.804 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.216 0.784 37 H 0.172 0.828 38 H 0.164 0.836 39 H 0.174 0.826 40 H 0.192 0.808 41 H 0.082 0.918 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 16.001 -19.641 2.510 25.458 hybrid contribution -0.317 1.639 0.066 1.671 sum 15.684 -18.002 2.576 24.014 Atomic orbital electron populations 1.69705 1.05142 1.25900 1.57029 1.24687 0.95230 0.97233 1.01723 0.86546 0.79218 0.84958 0.77763 1.21042 1.21704 1.20267 1.19092 0.80380 0.94853 1.43541 0.89101 1.42726 1.04134 1.01705 1.89802 1.20454 0.91075 0.89490 0.92711 0.92277 1.21879 0.96659 0.96502 1.01818 1.21860 1.00904 0.98032 0.95904 1.22460 0.84750 1.02950 0.94012 1.47938 1.18568 1.11291 1.54644 1.15500 0.85495 0.81920 0.79247 1.90859 1.21261 1.84085 1.46416 1.19978 0.95601 0.83553 1.25302 1.23454 0.90579 0.95502 0.97356 1.70527 1.26756 1.00960 1.23260 1.21094 0.81185 0.93749 1.04251 1.20327 0.99616 0.88885 1.02279 1.21166 0.91301 1.01104 0.97647 1.20959 1.00844 0.91311 1.03480 1.22030 0.87596 0.95220 0.99928 1.42434 1.07467 1.06666 1.42668 1.22763 0.95577 0.83759 1.00806 0.92977 0.80414 0.91262 0.92015 0.91497 0.90697 0.88378 0.90838 0.78371 0.82770 0.83587 0.82620 0.80841 0.91829 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 2 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 3 Si 0.88 21.85 27.74 -169.99 -4.71 17.13 16 4 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 7 C -0.25 -6.99 10.41 -15.06 -0.16 -7.15 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.74 -17.15 4.93 -53.32 -0.26 -17.41 16 10 C 0.17 3.27 2.92 -67.82 -0.20 3.07 16 11 H 0.06 1.22 8.08 -51.93 -0.42 0.80 16 12 C -0.13 -1.87 5.35 -26.69 -0.14 -2.01 16 13 C -0.13 -1.45 6.08 -26.61 -0.16 -1.61 16 14 C 0.08 0.90 5.27 -3.71 -0.02 0.88 16 15 N -0.59 -8.98 2.97 -176.10 -0.52 -9.51 16 16 C 0.59 9.81 7.42 -14.90 -0.11 9.70 16 17 O -0.55 -11.06 15.37 5.12 0.08 -10.98 16 18 C -0.13 -1.85 6.36 -83.47 -0.53 -2.38 16 19 C 0.09 1.09 9.43 -17.23 -0.16 0.93 16 20 N -0.50 -6.42 11.25 -12.27 -0.14 -6.56 16 21 C 0.24 2.89 7.77 -156.06 -1.21 1.68 16 22 C -0.09 -0.77 10.10 -39.37 -0.40 -1.17 16 23 C -0.09 -0.58 10.07 -39.56 -0.40 -0.98 16 24 C -0.15 -1.11 10.00 -39.92 -0.40 -1.51 16 25 C 0.08 0.86 10.57 -16.79 -0.18 0.68 16 26 N -0.32 -4.27 2.96 -60.14 -0.18 -4.45 16 27 C 0.10 1.73 6.02 -3.71 -0.02 1.71 16 28 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 29 H 0.36 8.14 5.66 -40.82 -0.23 7.91 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 34 H 0.10 0.96 3.68 -51.93 -0.19 0.77 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.20 1.77 6.03 -52.49 -0.32 1.45 16 37 H 0.15 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.17 2.07 7.28 -52.49 -0.38 1.69 16 41 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.10 2.11 7.00 -51.93 -0.36 1.74 16 LS Contribution 340.30 15.07 5.13 5.13 Total: -1.00 -35.71 340.30 -9.32 -45.03 By element: Atomic # 1 Polarization: 13.46 SS G_CDS: -5.30 Total: 8.16 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -4.19 Total: 1.95 kcal Atomic # 7 Polarization: -66.10 SS G_CDS: -0.33 Total: -66.43 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: 0.08 Total: -10.98 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -35.71 -9.32 -45.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999540723.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.096 kcal (2) G-P(sol) polarization free energy of solvation -35.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds