Wall clock time and date at job start Fri Apr 10 2020 23:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86800 * 120.00162 * 2 1 4 4 H 1.48503 * 109.47029 * 270.27494 * 3 2 1 5 5 H 1.48500 * 109.47025 * 30.27013 * 3 2 1 6 6 H 1.48490 * 109.47198 * 150.26965 * 3 2 1 7 7 C 1.38814 * 119.99739 * 180.27134 * 2 1 3 8 8 H 1.07991 * 120.00238 * 359.73033 * 7 2 1 9 9 N 1.36936 * 119.99884 * 179.72859 * 7 2 1 10 10 C 1.46491 * 120.00156 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49980 * 34.93388 * 10 9 7 12 12 C 1.53041 * 109.49956 * 154.99801 * 10 9 7 13 13 C 1.53041 * 109.53841 * 181.31616 * 12 10 9 14 14 C 1.53190 * 109.31572 * 298.63431 * 13 12 10 15 15 N 1.46931 * 108.77425 * 54.63645 * 14 13 12 16 16 C 1.34769 * 120.63365 * 126.41171 * 15 14 13 17 17 O 1.21775 * 120.00421 * 181.39107 * 16 15 14 18 18 C 1.41812 * 120.00067 * 1.39370 * 16 15 14 19 19 C 1.38532 * 126.78479 * 29.23114 * 18 16 15 20 20 N 1.32332 * 108.21605 * 180.02562 * 19 18 16 21 21 C 1.33206 * 109.81194 * 0.02562 * 20 19 18 22 22 C 1.40651 * 131.81675 * 180.02562 * 21 20 19 23 23 C 1.36286 * 119.38309 * 179.20495 * 22 21 20 24 24 C 1.40174 * 119.60862 * 0.64019 * 23 22 21 25 25 C 1.35258 * 120.12465 * 359.57080 * 24 23 22 26 26 N 1.35955 * 120.63798 * 0.03118 * 25 24 23 27 27 C 1.46931 * 118.73429 * 306.39155 * 15 14 13 28 28 H 0.97000 * 120.00087 * 359.73308 * 1 2 3 29 29 H 0.97001 * 120.00077 * 359.97438 * 9 7 2 30 30 H 1.09001 * 109.46219 * 301.33826 * 12 10 9 31 31 H 1.08999 * 109.46159 * 61.30996 * 12 10 9 32 32 H 1.08998 * 109.49699 * 58.59195 * 13 12 10 33 33 H 1.09008 * 109.49735 * 178.68196 * 13 12 10 34 34 H 1.08995 * 109.58712 * 174.41890 * 14 13 12 35 35 H 1.09002 * 109.58462 * 294.85199 * 14 13 12 36 36 H 1.07999 * 125.89081 * 359.97078 * 19 18 16 37 37 H 1.08000 * 120.30601 * 359.94739 * 22 21 20 38 38 H 1.08002 * 120.19769 * 180.21191 * 23 22 21 39 39 H 1.08000 * 119.93869 * 179.59816 * 24 23 22 40 40 H 1.08002 * 119.68239 * 179.97438 * 25 24 23 41 41 H 1.08994 * 109.58881 * 293.82146 * 27 15 14 42 42 H 1.09003 * 109.58437 * 173.39204 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4919 2.0497 -1.4001 5 1 1.4506 2.6510 0.7057 6 1 3.5505 1.4385 0.6943 7 6 2.0102 -1.2022 -0.0057 8 1 1.4702 -2.1374 -0.0057 9 7 3.3795 -1.2022 -0.0113 10 6 4.1120 -2.4708 -0.0179 11 1 3.5620 -3.2054 -0.6061 12 6 5.4972 -2.2578 -0.6327 13 6 6.2509 -3.5892 -0.6701 14 6 6.4313 -4.1096 0.7594 15 7 5.1142 -4.1798 1.4068 16 6 4.6903 -5.3240 1.9790 17 8 3.5863 -5.3767 2.4902 18 6 5.5300 -6.4668 1.9859 19 6 6.9153 -6.4783 1.9910 20 7 7.3185 -7.7387 1.9961 21 6 6.2624 -8.5506 1.9940 22 6 6.1578 -9.9532 1.9978 23 6 4.9239 -10.5316 2.0106 24 6 3.7794 -9.7222 2.0062 25 6 3.9008 -8.3751 1.9980 26 7 5.1280 -7.7900 1.9934 27 6 4.2682 -2.9786 1.4190 28 1 -0.4850 0.8400 0.0039 29 1 3.8646 -0.3622 -0.0117 30 1 5.3892 -1.8731 -1.6468 31 1 6.0557 -1.5414 -0.0302 32 1 5.6810 -4.3136 -1.2518 33 1 7.2283 -3.4412 -1.1294 34 1 6.8787 -5.1032 0.7328 35 1 7.0767 -3.4307 1.3167 36 1 7.5557 -5.6087 1.9901 37 1 7.0471 -10.5660 2.0027 38 1 4.8283 -11.6074 2.0172 39 1 2.7990 -10.1751 2.0097 40 1 3.0142 -7.7583 1.9942 41 1 4.7372 -2.2075 2.0300 42 1 3.2883 -3.2259 1.8275 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999540723.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:08 Heat of formation + Delta-G solvation = 66.201082 kcal Electronic energy + Delta-G solvation = -25996.543255 eV Core-core repulsion = 22363.984027 eV Total energy + Delta-G solvation = -3632.559229 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -44.08130 -41.17369 -38.79607 -38.49362 -36.39634 -34.69831 -34.12795 -32.97047 -31.84946 -30.91186 -29.71421 -26.91494 -25.84509 -24.93136 -24.19992 -23.53761 -22.93779 -21.97313 -20.73541 -19.59876 -18.67498 -18.18220 -17.87298 -17.37758 -17.03687 -16.54753 -16.47820 -16.19035 -15.80840 -15.68983 -15.30136 -15.18425 -14.84750 -14.72807 -14.26220 -14.02445 -13.86494 -13.37571 -13.28651 -13.01348 -12.97128 -12.88141 -12.55218 -12.17598 -12.07006 -11.94808 -11.87981 -11.78220 -11.54164 -11.39272 -11.16023 -11.02285 -10.00459 -9.91331 -9.33045 -8.97159 -8.06354 -5.42886 -0.35377 -0.21365 1.06566 1.29789 1.36400 1.41972 1.49094 2.01726 2.15434 2.44676 2.46112 3.07215 3.24244 3.37947 3.48891 3.54929 3.78648 3.89344 3.94244 4.02936 4.07643 4.10422 4.14616 4.26524 4.32814 4.53041 4.58097 4.65168 4.77586 4.82995 4.87372 4.98756 5.01874 5.10339 5.12385 5.28056 5.33215 5.40688 5.42194 5.48430 5.71878 5.83893 6.17099 6.29106 6.52789 6.98341 7.03140 7.74774 7.97860 9.15488 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023109 B = 0.003289 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.358520 B = 8511.201785 C = 9341.568235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.064 4.064 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.297 1.297 6 H -0.244 1.244 7 C -0.240 4.240 8 H 0.043 0.957 9 N -0.742 5.742 10 C 0.171 3.829 11 H 0.026 0.974 12 C -0.121 4.121 13 C -0.121 4.121 14 C 0.077 3.923 15 N -0.590 5.590 16 C 0.586 3.414 17 O -0.603 6.603 18 C -0.174 4.174 19 C 0.109 3.891 20 N -0.515 5.515 21 C 0.227 3.773 22 C -0.098 4.098 23 C -0.067 4.067 24 C -0.118 4.118 25 C 0.030 3.970 26 N -0.331 5.331 27 C 0.108 3.892 28 H 0.259 0.741 29 H 0.372 0.628 30 H 0.070 0.930 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.230 0.770 37 H 0.183 0.817 38 H 0.195 0.805 39 H 0.189 0.811 40 H 0.150 0.850 41 H 0.076 0.924 42 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.415 -20.834 1.937 29.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.790 3.210 4 H -0.199 1.199 5 H -0.224 1.224 6 H -0.168 1.168 7 C -0.371 4.371 8 H 0.061 0.939 9 N -0.385 5.385 10 C 0.061 3.939 11 H 0.044 0.956 12 C -0.159 4.159 13 C -0.159 4.159 14 C -0.044 4.044 15 N -0.321 5.321 16 C 0.377 3.623 17 O -0.486 6.486 18 C -0.288 4.288 19 C -0.051 4.051 20 N -0.235 5.235 21 C -0.013 4.013 22 C -0.117 4.117 23 C -0.091 4.091 24 C -0.138 4.138 25 C -0.094 4.094 26 N 0.000 5.000 27 C -0.017 4.017 28 H 0.068 0.932 29 H 0.206 0.794 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.136 0.864 34 H 0.133 0.867 35 H 0.124 0.876 36 H 0.246 0.754 37 H 0.201 0.799 38 H 0.212 0.788 39 H 0.206 0.794 40 H 0.167 0.833 41 H 0.094 0.906 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 20.393 -21.126 2.175 29.443 hybrid contribution -1.739 1.763 0.169 2.483 sum 18.653 -19.362 2.344 26.988 Atomic orbital electron populations 1.69918 1.07493 1.26945 1.59150 1.25636 0.96205 1.01752 1.01980 0.85280 0.78736 0.78590 0.78349 1.19934 1.22383 1.16844 1.18945 0.82758 0.93113 1.42233 0.93934 1.42623 1.02296 1.03678 1.89923 1.20614 0.93313 0.87015 0.92935 0.95569 1.21810 0.93530 0.98959 1.01605 1.21869 1.02316 0.95656 0.96091 1.22841 0.82753 1.04889 0.93915 1.47932 1.19690 1.09862 1.54629 1.15901 0.85055 0.82888 0.78434 1.90815 1.23824 1.84960 1.49030 1.19713 0.96148 0.83419 1.29521 1.23884 0.89686 0.96304 0.95238 1.70558 1.27080 1.01238 1.24595 1.21814 0.80687 0.95146 1.03626 1.20868 1.01694 0.87385 1.01785 1.21738 0.89732 1.03197 0.94462 1.21500 1.03158 0.89703 0.99412 1.22145 0.86811 0.96698 1.03749 1.42550 1.08233 1.06522 1.42687 1.22258 0.94107 0.85355 0.99967 0.93201 0.79386 0.91133 0.89847 0.92979 0.86354 0.86672 0.87565 0.75449 0.79946 0.78792 0.79376 0.83278 0.90584 0.93669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.07 13.97 21.65 0.30 -64.77 16 2 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.96 45.51 27.74 68.60 1.90 47.41 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 6 H -0.24 -10.12 6.52 99.48 0.65 -9.47 16 7 C -0.24 -14.21 10.41 84.03 0.88 -13.34 16 8 H 0.04 2.87 8.06 -2.91 -0.02 2.84 16 9 N -0.74 -34.94 4.93 -322.60 -1.59 -36.53 16 10 C 0.17 6.64 2.92 45.07 0.13 6.77 16 11 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 12 C -0.12 -3.21 5.35 30.62 0.16 -3.05 16 13 C -0.12 -2.39 6.08 30.67 0.19 -2.20 16 14 C 0.08 1.51 5.27 86.36 0.45 1.96 16 15 N -0.59 -18.37 2.97 -829.26 -2.46 -20.84 16 16 C 0.59 20.92 7.42 85.13 0.63 21.56 16 17 O -0.60 -27.18 15.37 -4.59 -0.07 -27.25 16 18 C -0.17 -5.12 6.36 39.08 0.25 -4.87 16 19 C 0.11 2.51 9.43 84.69 0.80 3.31 16 20 N -0.52 -12.52 11.25 -192.72 -2.17 -14.69 16 21 C 0.23 5.22 7.77 134.00 1.04 6.26 16 22 C -0.10 -1.34 10.10 22.40 0.23 -1.12 16 23 C -0.07 -0.61 10.07 22.28 0.22 -0.38 16 24 C -0.12 -1.56 10.00 22.05 0.22 -1.34 16 25 C 0.03 0.72 10.57 83.37 0.88 1.60 16 26 N -0.33 -8.96 2.96 -344.19 -1.02 -9.97 16 27 C 0.11 4.15 6.02 86.36 0.52 4.67 16 28 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 29 H 0.37 16.13 5.66 -92.71 -0.52 15.61 16 30 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.12 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.12 1.94 3.68 -2.39 -0.01 1.93 16 35 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.23 3.42 6.03 -2.91 -0.02 3.40 16 37 H 0.18 1.43 8.06 -2.91 -0.02 1.41 16 38 H 0.19 -0.03 8.06 -2.91 -0.02 -0.06 16 39 H 0.19 1.17 8.06 -2.91 -0.02 1.15 16 40 H 0.15 4.12 7.28 -2.91 -0.02 4.10 16 41 H 0.08 2.69 8.14 -2.39 -0.02 2.68 16 42 H 0.04 2.18 7.00 -2.39 -0.02 2.16 16 Total: -1.00 -87.78 340.30 2.44 -85.34 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.47 Total: 24.88 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 7.07 Total: 16.41 kcal Atomic # 7 Polarization: -139.86 SS G_CDS: -6.94 Total: -146.79 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.07 Total: -27.25 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Total: -87.78 2.44 -85.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999540723.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.542 kcal (2) G-P(sol) polarization free energy of solvation -87.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.341 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds