Wall clock time and date at job start Fri Apr 10 2020 23:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86795 * 120.00432 * 2 1 4 4 H 1.48497 * 109.47518 * 240.27162 * 3 2 1 5 5 H 1.48506 * 109.46801 * 0.27120 * 3 2 1 6 6 H 1.48500 * 109.47414 * 120.27111 * 3 2 1 7 7 C 1.38821 * 119.99736 * 180.27175 * 2 1 3 8 8 H 1.07996 * 119.99757 * 179.72813 * 7 2 1 9 9 N 1.36934 * 120.00026 * 359.72541 * 7 2 1 10 10 C 1.46496 * 119.99996 * 179.97438 * 9 7 2 11 11 H 1.08996 * 109.49756 * 34.94226 * 10 9 7 12 12 C 1.53044 * 109.49795 * 155.00476 * 10 9 7 13 13 C 1.53039 * 109.53851 * 181.31955 * 12 10 9 14 14 C 1.53192 * 109.30836 * 298.63162 * 13 12 10 15 15 N 1.46920 * 108.77694 * 54.63882 * 14 13 12 16 16 C 1.34777 * 120.63138 * 126.36866 * 15 14 13 17 17 O 1.21639 * 119.99697 * 175.83413 * 16 15 14 18 18 C 1.47259 * 120.00048 * 355.83389 * 16 15 14 19 19 C 1.38926 * 120.90491 * 53.87119 * 18 16 15 20 20 C 1.39776 * 119.19057 * 180.02562 * 19 18 16 21 21 C 1.35067 * 121.27284 * 0.02562 * 20 19 18 22 22 N 1.36232 * 121.76719 * 359.95870 * 21 20 19 23 23 N 1.40079 * 132.48391 * 179.97438 * 22 21 20 24 24 C 1.31360 * 108.88696 * 180.02562 * 23 22 21 25 25 C 1.38875 * 108.93976 * 359.97438 * 24 23 22 26 26 C 1.37183 * 120.19060 * 359.74430 * 22 21 20 27 27 C 1.46931 * 118.73620 * 306.38587 * 15 14 13 28 28 H 0.97004 * 119.99857 * 359.73088 * 1 2 3 29 29 H 0.97008 * 119.99705 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.45766 * 301.33856 * 12 10 9 31 31 H 1.08999 * 109.46008 * 61.30873 * 12 10 9 32 32 H 1.08997 * 109.49785 * 58.58440 * 13 12 10 33 33 H 1.09005 * 109.49655 * 178.65031 * 13 12 10 34 34 H 1.08999 * 109.58488 * 174.42758 * 14 13 12 35 35 H 1.08999 * 109.58742 * 294.84554 * 14 13 12 36 36 H 1.08003 * 120.41209 * 359.97438 * 19 18 16 37 37 H 1.07990 * 119.36450 * 179.97438 * 20 19 18 38 38 H 1.08002 * 119.11703 * 179.97438 * 21 20 19 39 39 H 1.07997 * 125.53032 * 180.02562 * 24 23 22 40 40 H 1.08003 * 126.22069 * 180.02562 * 25 24 23 41 41 H 1.08997 * 109.58486 * 293.82215 * 27 15 14 42 42 H 1.09004 * 109.58247 * 173.39469 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.0990 1.6992 -1.2157 5 1 1.2852 2.7464 0.0066 6 1 3.1090 1.6934 1.2092 7 6 2.0102 -1.2022 -0.0057 8 1 3.0901 -1.2022 -0.0101 9 7 1.3255 -2.3881 -0.0056 10 6 2.0579 -3.6568 -0.0122 11 1 2.9719 -3.5523 0.5724 12 6 1.1837 -4.7545 0.5985 13 6 1.9600 -6.0732 0.6222 14 6 2.3135 -6.4787 -0.8121 15 7 3.0297 -5.3684 -1.4546 16 6 4.2302 -5.5690 -2.0335 17 8 4.7783 -4.6602 -2.6277 18 6 4.8782 -6.8885 -1.9465 19 6 4.2104 -8.0392 -2.3462 20 6 4.8595 -9.2732 -2.2476 21 6 6.1201 -9.3663 -1.7718 22 7 6.8171 -8.2678 -1.3675 23 7 8.1077 -8.1045 -0.8481 24 6 8.3128 -6.8287 -0.6119 25 6 7.1744 -6.1162 -0.9654 26 6 6.2458 -7.0227 -1.4412 27 6 2.4125 -4.0350 -1.4537 28 1 -0.4850 0.8401 0.0039 29 1 0.3554 -2.3880 -0.0020 30 1 0.9095 -4.4762 1.6161 31 1 0.2811 -4.8753 -0.0006 32 1 2.8751 -5.9463 1.2005 33 1 1.3455 -6.8489 1.0792 34 1 2.9502 -7.3632 -0.7953 35 1 1.4001 -6.6940 -1.3666 36 1 3.2016 -7.9813 -2.7277 37 1 4.3428 -10.1695 -2.5572 38 1 6.5882 -10.3376 -1.7103 39 1 9.2198 -6.4029 -0.2090 40 1 7.0402 -5.0474 -0.8865 41 1 1.5072 -4.0511 -2.0606 42 1 3.1147 -3.3071 -1.8603 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999604180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:14 Heat of formation + Delta-G solvation = 94.825973 kcal Electronic energy + Delta-G solvation = -25989.342364 eV Core-core repulsion = 22358.024404 eV Total energy + Delta-G solvation = -3631.317960 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.12340 -39.97091 -37.44480 -37.16515 -34.55398 -33.12759 -32.19280 -31.18341 -30.91201 -29.04288 -28.04583 -25.89533 -24.14452 -23.89308 -22.91232 -21.89965 -21.86960 -20.34785 -19.10292 -17.68146 -17.52050 -17.09986 -16.48245 -16.09771 -15.72629 -15.63172 -15.07191 -14.56444 -14.21188 -14.13389 -14.06478 -13.65416 -13.43430 -13.32922 -12.84489 -12.49442 -12.47326 -12.41094 -12.30878 -12.00474 -11.36996 -11.10360 -11.03787 -10.83448 -10.73194 -10.61532 -10.51105 -10.24227 -9.86246 -9.83127 -9.62975 -9.59230 -9.08923 -8.41508 -7.82174 -7.01936 -5.79620 -3.09581 0.22521 0.85753 1.94205 2.53296 2.60148 2.95899 3.27409 3.46059 3.49836 3.51809 3.97762 4.15898 4.38224 4.41823 4.57590 4.64107 4.87234 5.03574 5.05179 5.20488 5.23107 5.36910 5.44780 5.47331 5.50406 5.59344 5.69580 5.77144 5.83028 5.87768 5.99456 6.00509 6.13684 6.18474 6.31972 6.39742 6.45307 6.58703 6.67720 6.79607 6.97062 7.31158 7.53959 7.70640 8.24401 8.38597 9.50402 10.03782 10.39096 11.42526 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.003489 C = 0.003144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.641036 B = 8023.315644 C = 8904.968021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.009 4.009 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.245 4.245 8 H 0.071 0.929 9 N -0.717 5.717 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.097 3.903 15 N -0.595 5.595 16 C 0.563 3.437 17 O -0.525 6.525 18 C -0.107 4.107 19 C -0.054 4.054 20 C -0.173 4.173 21 C 0.128 3.872 22 N -0.283 5.283 23 N -0.318 5.318 24 C 0.082 3.918 25 C -0.262 4.262 26 C 0.125 3.875 27 C 0.093 3.907 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.148 0.852 37 H 0.159 0.841 38 H 0.168 0.832 39 H 0.196 0.804 40 H 0.160 0.840 41 H 0.064 0.936 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.724 -22.885 -2.048 24.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.026 4.026 15 N -0.328 5.328 16 C 0.349 3.651 17 O -0.401 6.401 18 C -0.113 4.113 19 C -0.077 4.077 20 C -0.195 4.195 21 C 0.002 3.998 22 N -0.050 5.050 23 N -0.141 5.141 24 C -0.096 4.096 25 C -0.291 4.291 26 C 0.006 3.994 27 C -0.031 4.031 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.166 0.834 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.212 0.788 40 H 0.177 0.823 41 H 0.083 0.917 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.757 -23.353 -2.235 25.041 hybrid contribution -0.248 1.661 -0.095 1.682 sum 8.509 -21.693 -2.330 23.418 Atomic orbital electron populations 1.69649 1.05140 1.25920 1.57315 1.24741 0.95505 0.97754 1.02543 0.86267 0.78575 0.83344 0.78034 1.21064 1.21672 1.21171 1.19230 0.91094 0.83968 1.43275 0.91062 1.42366 1.05805 0.99547 1.88052 1.20489 0.95031 0.86498 0.92263 0.93057 1.21833 0.98678 0.94047 1.01901 1.21877 1.00975 0.98273 0.95727 1.21995 0.96931 0.89493 0.94131 1.48212 1.18514 1.11400 1.54684 1.17725 0.81119 0.86623 0.79678 1.90850 1.63892 1.43378 1.42005 1.20507 0.91512 0.94951 1.04316 1.21678 0.99937 0.90650 0.95393 1.20612 0.94010 0.99303 1.05549 1.21463 0.92103 0.90468 0.95737 1.46191 1.11519 1.05539 1.41761 1.77847 0.92526 1.19331 1.24399 1.23913 0.99274 0.90094 0.96270 1.21412 0.93472 1.00837 1.13405 1.20128 0.92956 0.85989 1.00278 1.22883 0.97886 0.81038 1.01295 0.93391 0.78037 0.91340 0.91963 0.91609 0.90949 0.89923 0.91045 0.83394 0.82332 0.81468 0.78764 0.82282 0.91741 0.88958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 2 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 3 Si 0.91 22.56 29.55 -169.99 -5.02 17.53 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.72 -17.55 5.12 -53.31 -0.27 -17.83 16 10 C 0.17 3.27 2.92 -67.81 -0.20 3.08 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.92 5.35 -26.69 -0.14 -2.06 16 13 C -0.13 -1.51 6.08 -26.61 -0.16 -1.68 16 14 C 0.10 1.07 5.55 -3.71 -0.02 1.05 16 15 N -0.60 -8.93 2.97 -174.10 -0.52 -9.45 16 16 C 0.56 9.12 7.17 -12.59 -0.09 9.03 16 17 O -0.52 -10.69 16.53 5.24 0.09 -10.60 16 18 C -0.11 -1.40 5.07 -102.69 -0.52 -1.92 16 19 C -0.05 -0.47 7.54 -38.75 -0.29 -0.77 16 20 C -0.17 -1.12 9.90 -40.13 -0.40 -1.52 16 21 C 0.13 1.05 11.12 -16.72 -0.19 0.86 16 22 N -0.28 -3.44 3.89 -9.42 -0.04 -3.48 16 23 N -0.32 -4.09 12.66 30.51 0.39 -3.71 16 24 C 0.08 0.96 11.95 -17.52 -0.21 0.75 16 25 C -0.26 -3.64 10.79 -39.35 -0.42 -4.06 16 26 C 0.13 1.74 6.88 -82.19 -0.57 1.17 16 27 C 0.09 1.72 6.01 -3.71 -0.02 1.70 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.39 9.91 7.80 -40.82 -0.32 9.59 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.08 0.75 4.72 -51.93 -0.24 0.50 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.15 0.99 7.38 -52.48 -0.39 0.60 16 37 H 0.16 0.42 8.06 -52.49 -0.42 0.00 16 38 H 0.17 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.20 1.52 8.06 -52.49 -0.42 1.09 16 40 H 0.16 2.28 8.06 -52.48 -0.42 1.85 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 2.01 7.03 -51.93 -0.36 1.64 16 LS Contribution 349.10 15.07 5.26 5.26 Total: -1.00 -34.89 349.10 -8.38 -43.27 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.51 Total: 7.74 kcal Atomic # 6 Polarization: 1.83 SS G_CDS: -3.48 Total: -1.65 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: 0.28 Total: -61.55 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.09 Total: -10.60 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.89 -8.38 -43.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999604180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.092 kcal (2) G-P(sol) polarization free energy of solvation -34.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds