Wall clock time and date at job start Fri Apr 10 2020 23:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99899 * 2 1 4 4 H 1.48507 * 109.47066 * 270.00281 * 3 2 1 5 5 H 1.48492 * 109.47201 * 30.00454 * 3 2 1 6 6 H 1.48499 * 109.47219 * 150.00389 * 3 2 1 7 7 C 1.38811 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00130 * 0.02562 * 7 2 1 9 9 N 1.36938 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46495 * 120.00223 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.49810 * 325.00156 * 10 9 7 12 12 C 1.53039 * 109.52724 * 204.92120 * 10 9 7 13 13 C 1.53039 * 109.54220 * 178.66656 * 12 10 9 14 14 C 1.53195 * 109.31013 * 61.36353 * 13 12 10 15 15 N 1.46922 * 108.77694 * 305.36725 * 14 13 12 16 16 C 1.34774 * 120.63347 * 233.58371 * 15 14 13 17 17 O 1.21611 * 120.00608 * 174.17902 * 16 15 14 18 18 C 1.47383 * 119.99613 * 354.18554 * 16 15 14 19 19 C 1.39255 * 120.83164 * 306.31103 * 18 16 15 20 20 N 1.31915 * 120.96302 * 179.72164 * 19 18 16 21 21 C 1.31920 * 122.72128 * 0.58211 * 20 19 18 22 22 C 1.38698 * 120.79568 * 359.69225 * 21 20 19 23 23 N 1.37748 * 134.30664 * 179.97438 * 22 21 20 24 24 H 0.96999 * 125.56400 * 0.06482 * 23 22 21 25 25 C 1.36567 * 108.87695 * 180.02562 * 23 22 21 26 26 C 1.34645 * 109.65858 * 359.97438 * 25 23 22 27 27 C 1.40983 * 118.83604 * 0.02693 * 22 21 20 28 28 C 1.46931 * 118.73843 * 53.60690 * 15 14 13 29 29 H 0.96997 * 119.99795 * 359.97438 * 1 2 3 30 30 H 0.97002 * 119.99963 * 0.02562 * 9 7 2 31 31 H 1.08996 * 109.46136 * 298.69018 * 12 10 9 32 32 H 1.09003 * 109.45646 * 58.64666 * 12 10 9 33 33 H 1.09008 * 109.49579 * 301.41595 * 13 12 10 34 34 H 1.08999 * 109.52691 * 181.33566 * 13 12 10 35 35 H 1.08997 * 109.58339 * 185.57701 * 14 13 12 36 36 H 1.08997 * 109.58452 * 65.15576 * 14 13 12 37 37 H 1.07990 * 119.52030 * 0.02562 * 19 18 16 38 38 H 1.08003 * 119.60421 * 179.71862 * 21 20 19 39 39 H 1.07999 * 125.16747 * 180.02562 * 25 23 22 40 40 H 1.08006 * 126.08204 * 180.02562 * 26 25 23 41 41 H 1.09001 * 109.58691 * 186.59984 * 28 15 14 42 42 H 1.09004 * 109.58265 * 66.17661 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4402 0.6999 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0014 9 7 3.3796 -1.2022 -0.0011 10 6 4.1121 -2.4709 -0.0011 11 1 3.5653 -3.2067 0.5887 12 6 5.5009 -2.2597 0.6061 13 6 6.2541 -3.5916 0.6368 14 6 6.4259 -4.1095 -0.7947 15 7 5.1051 -4.1777 -1.4346 16 6 4.6774 -5.3207 -2.0065 17 8 3.5433 -5.3970 -2.4388 18 6 5.5841 -6.4782 -2.1079 19 6 6.8400 -6.3516 -2.6959 20 7 7.6558 -7.3846 -2.7831 21 6 7.3369 -8.5847 -2.3377 22 6 6.1069 -8.8167 -1.7403 23 7 5.4970 -9.9234 -1.1919 24 1 5.8845 -10.8108 -1.1348 25 6 4.2582 -9.5671 -0.7408 26 6 4.0475 -8.2591 -0.9809 27 6 5.1984 -7.7457 -1.6162 28 6 4.2597 -2.9761 -1.4397 29 1 -0.4850 0.8400 0.0004 30 1 3.8647 -0.3621 -0.0007 31 1 6.0562 -1.5424 0.0019 32 1 5.3989 -1.8768 1.6216 33 1 5.6871 -4.3168 1.2205 34 1 7.2342 -3.4455 1.0910 35 1 6.8730 -5.1033 -0.7725 36 1 7.0685 -3.4299 -1.3545 37 1 7.1527 -5.3927 -3.0818 38 1 8.0422 -9.3963 -2.4392 39 1 3.5548 -10.2332 -0.2632 40 1 3.1561 -7.7023 -0.7323 41 1 3.2774 -3.2221 -1.8432 42 1 4.7257 -2.2041 -2.0521 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999606284.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:16 Heat of formation + Delta-G solvation = 30.924414 kcal Electronic energy + Delta-G solvation = -25984.995824 eV Core-core repulsion = 22350.906885 eV Total energy + Delta-G solvation = -3634.088940 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.84582 -41.15634 -39.08453 -38.65601 -36.33942 -34.19971 -33.52723 -32.95152 -31.24741 -30.93352 -30.09523 -26.93734 -25.70181 -24.90339 -23.69287 -23.12931 -22.40647 -21.72090 -20.63650 -19.60063 -19.06894 -18.53678 -17.69607 -17.08387 -16.78837 -16.45755 -16.19051 -15.81405 -15.76998 -15.55900 -15.24435 -15.08397 -14.80130 -14.37427 -14.25290 -14.01019 -13.86997 -13.78058 -13.45185 -13.29670 -13.05457 -12.93242 -12.58677 -12.10236 -11.95544 -11.89552 -11.81700 -11.53645 -11.40756 -11.15653 -11.11442 -10.51851 -9.87538 -9.66282 -9.28313 -8.98727 -8.04711 -5.41289 -0.44071 0.36291 1.36967 1.42584 1.48366 1.50051 1.70006 1.94402 2.06051 2.47399 2.78499 3.25336 3.28958 3.50324 3.56287 3.73051 3.86330 3.92752 4.01211 4.06332 4.12529 4.13660 4.26407 4.33619 4.43160 4.56812 4.64886 4.69940 4.75148 4.84814 4.88375 4.99261 5.08698 5.12166 5.33450 5.38173 5.41102 5.44639 5.48130 5.73882 5.79039 6.18771 6.35580 6.56562 6.89604 7.03531 7.07267 7.76176 7.99581 9.17209 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.022286 B = 0.003357 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.103182 B = 8338.510254 C = 8925.256647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.065 4.065 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.242 1.242 7 C -0.239 4.239 8 H 0.042 0.958 9 N -0.742 5.742 10 C 0.171 3.829 11 H 0.026 0.974 12 C -0.119 4.119 13 C -0.121 4.121 14 C 0.101 3.899 15 N -0.596 5.596 16 C 0.558 3.442 17 O -0.587 6.587 18 C -0.156 4.156 19 C 0.102 3.898 20 N -0.485 5.485 21 C 0.148 3.852 22 C 0.019 3.981 23 N -0.552 5.552 24 H 0.445 0.555 25 C 0.114 3.886 26 C -0.257 4.257 27 C -0.058 4.058 28 C 0.104 3.896 29 H 0.259 0.741 30 H 0.372 0.628 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.053 0.947 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.171 0.829 38 H 0.200 0.800 39 H 0.224 0.776 40 H 0.122 0.878 41 H 0.044 0.956 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.205 -21.748 -0.130 31.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.790 3.210 4 H -0.203 1.203 5 H -0.222 1.222 6 H -0.166 1.166 7 C -0.370 4.370 8 H 0.060 0.940 9 N -0.386 5.386 10 C 0.062 3.938 11 H 0.044 0.956 12 C -0.158 4.158 13 C -0.159 4.159 14 C -0.020 4.020 15 N -0.328 5.328 16 C 0.347 3.653 17 O -0.468 6.468 18 C -0.162 4.162 19 C -0.049 4.049 20 N -0.194 5.194 21 C -0.018 4.018 22 C -0.092 4.092 23 N -0.156 5.156 24 H 0.288 0.712 25 C -0.018 4.018 26 C -0.281 4.281 27 C -0.070 4.070 28 C -0.021 4.021 29 H 0.068 0.932 30 H 0.206 0.794 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.133 0.867 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.188 0.812 38 H 0.217 0.783 39 H 0.240 0.760 40 H 0.140 0.860 41 H 0.063 0.937 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 23.275 -21.794 -0.716 31.894 hybrid contribution -1.749 0.913 0.247 1.988 sum 21.526 -20.881 -0.469 29.993 Atomic orbital electron populations 1.69923 1.07491 1.26920 1.59203 1.25633 0.96205 1.01730 1.02008 0.85284 0.78845 0.78614 0.78241 1.20317 1.22159 1.16626 1.18950 0.82747 0.93128 1.42176 0.93963 1.42614 1.02304 1.03659 1.89985 1.20600 0.93180 0.87011 0.93045 0.95608 1.21789 0.93565 0.98795 1.01617 1.21861 1.02177 0.95816 0.96065 1.22169 0.82373 1.03653 0.93790 1.48208 1.19168 1.10150 1.55281 1.18624 0.86349 0.83047 0.77287 1.90785 1.21632 1.83476 1.50861 1.20175 0.96735 0.92596 1.06695 1.22689 0.87564 0.98646 0.95967 1.67706 1.33674 0.99391 1.18621 1.22566 0.91822 0.95423 0.92037 1.19356 0.96994 0.88008 1.04850 1.41757 1.13827 1.10622 1.49378 0.71181 1.22660 0.87083 0.95358 0.96721 1.20767 0.99661 0.96622 1.11073 1.18486 0.96203 0.92297 1.00010 1.22254 0.94234 0.85680 0.99920 0.93211 0.79413 0.89914 0.91173 0.92837 0.86682 0.88634 0.88333 0.81220 0.78345 0.75963 0.86028 0.93723 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -65.66 13.97 21.65 0.30 -65.36 16 2 C -0.06 -3.93 5.50 84.86 0.47 -3.47 16 3 Si 0.96 45.97 27.74 68.60 1.90 47.87 16 4 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.24 -10.08 6.52 99.48 0.65 -9.43 16 7 C -0.24 -14.38 10.41 84.03 0.88 -13.50 16 8 H 0.04 2.89 8.06 -2.91 -0.02 2.86 16 9 N -0.74 -35.59 4.93 -322.59 -1.59 -37.18 16 10 C 0.17 6.84 2.92 45.07 0.13 6.97 16 11 H 0.03 1.19 8.08 -2.38 -0.02 1.17 16 12 C -0.12 -3.32 5.35 30.62 0.16 -3.15 16 13 C -0.12 -2.57 6.08 30.67 0.19 -2.38 16 14 C 0.10 2.20 5.58 86.36 0.48 2.68 16 15 N -0.60 -19.30 2.97 -822.83 -2.45 -21.75 16 16 C 0.56 20.50 7.13 86.65 0.62 21.11 16 17 O -0.59 -27.81 16.50 -4.07 -0.07 -27.87 16 18 C -0.16 -4.51 4.64 -19.87 -0.09 -4.60 16 19 C 0.10 2.36 8.96 84.93 0.76 3.12 16 20 N -0.49 -9.77 10.30 -194.56 -2.00 -11.77 16 21 C 0.15 2.22 11.21 84.79 0.95 3.17 16 22 C 0.02 0.33 7.31 39.00 0.29 0.61 16 23 N -0.55 -5.44 6.13 -187.55 -1.15 -6.59 16 24 H 0.45 0.33 8.96 -92.71 -0.83 -0.50 16 25 C 0.11 1.51 11.84 83.13 0.98 2.49 16 26 C -0.26 -6.43 10.73 22.16 0.24 -6.19 16 27 C -0.06 -1.55 6.06 -21.14 -0.13 -1.67 16 28 C 0.10 4.11 6.02 86.36 0.52 4.63 16 29 H 0.26 16.31 8.31 -92.71 -0.77 15.54 16 30 H 0.37 16.40 5.66 -92.71 -0.52 15.87 16 31 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 34 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.10 1.87 5.39 -2.39 -0.01 1.85 16 36 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.17 3.36 7.74 -2.92 -0.02 3.33 16 38 H 0.20 1.15 8.06 -2.91 -0.02 1.12 16 39 H 0.22 0.86 8.06 -2.91 -0.02 0.84 16 40 H 0.12 3.71 8.06 -2.91 -0.02 3.69 16 41 H 0.04 2.21 7.00 -2.39 -0.02 2.19 16 42 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -89.84 345.25 1.04 -88.80 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -0.35 Total: 24.03 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 6.44 Total: 9.82 kcal Atomic # 7 Polarization: -135.76 SS G_CDS: -6.89 Total: -142.65 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.07 Total: -27.87 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 1.90 Total: 47.87 kcal Total: -89.84 1.04 -88.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999606284.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.720 kcal (2) G-P(sol) polarization free energy of solvation -89.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds