Wall clock time and date at job start Fri Apr 10 2020 23:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00010 * 2 1 4 4 H 1.48500 * 109.46827 * 240.27610 * 3 2 1 5 5 H 1.48507 * 109.47022 * 0.27137 * 3 2 1 6 6 H 1.48497 * 109.47323 * 120.27302 * 3 2 1 7 7 C 1.38804 * 120.00174 * 180.27128 * 2 1 3 8 8 H 1.08009 * 120.00300 * 179.72273 * 7 2 1 9 9 N 1.36942 * 120.00249 * 359.72875 * 7 2 1 10 10 C 1.46496 * 120.00305 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.49661 * 34.93161 * 10 9 7 12 12 C 1.53037 * 109.49555 * 154.99860 * 10 9 7 13 13 C 1.53046 * 109.53453 * 181.31511 * 12 10 9 14 14 C 1.53184 * 109.31581 * 298.63377 * 13 12 10 15 15 N 1.46933 * 108.77441 * 54.63418 * 14 13 12 16 16 C 1.34776 * 120.63007 * 126.41173 * 15 14 13 17 17 O 1.21602 * 120.00228 * 175.83493 * 16 15 14 18 18 C 1.47386 * 119.99712 * 355.84467 * 16 15 14 19 19 C 1.39249 * 120.83722 * 54.14314 * 18 16 15 20 20 N 1.31915 * 120.96326 * 179.72011 * 19 18 16 21 21 C 1.31921 * 122.72381 * 0.55266 * 20 19 18 22 22 C 1.38689 * 120.78945 * 359.74317 * 21 20 19 23 23 N 1.37752 * 134.29949 * 179.97438 * 22 21 20 24 24 H 0.96998 * 125.56405 * 0.02562 * 23 22 21 25 25 C 1.36568 * 108.87895 * 180.02562 * 23 22 21 26 26 C 1.34640 * 109.66007 * 359.97438 * 25 23 22 27 27 C 1.40984 * 118.84515 * 359.97438 * 22 21 20 28 28 C 1.46923 * 118.74028 * 306.39536 * 15 14 13 29 29 H 0.97007 * 120.00034 * 359.72823 * 1 2 3 30 30 H 0.96997 * 119.99423 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46004 * 301.33351 * 12 10 9 32 32 H 1.08995 * 109.46277 * 61.30870 * 12 10 9 33 33 H 1.09006 * 109.49319 * 58.58826 * 13 12 10 34 34 H 1.09000 * 109.49281 * 178.68098 * 13 12 10 35 35 H 1.09001 * 109.58845 * 174.42176 * 14 13 12 36 36 H 1.08997 * 109.58874 * 294.70890 * 14 13 12 37 37 H 1.07994 * 119.51830 * 359.97438 * 19 18 16 38 38 H 1.07992 * 119.60224 * 179.72122 * 21 20 19 39 39 H 1.08004 * 125.17042 * 179.97438 * 25 23 22 40 40 H 1.08003 * 126.09296 * 179.97438 * 26 25 23 41 41 H 1.09001 * 109.58348 * 293.81914 * 28 15 14 42 42 H 1.09000 * 109.58612 * 173.39489 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.0988 1.6993 -1.2159 5 1 1.2851 2.7465 0.0066 6 1 3.1089 1.6936 1.2091 7 6 2.0102 -1.2020 -0.0057 8 1 3.0903 -1.2021 -0.0102 9 7 1.3256 -2.3881 -0.0057 10 6 2.0581 -3.6567 -0.0123 11 1 2.9721 -3.5521 0.5722 12 6 1.1839 -4.7544 0.5985 13 6 1.9604 -6.0731 0.6221 14 6 2.3139 -6.4786 -0.8121 15 7 3.0300 -5.3682 -1.4547 16 6 4.2301 -5.5689 -2.0343 17 8 4.7780 -4.6603 -2.6285 18 6 4.8783 -6.8897 -1.9482 19 6 4.2090 -8.0412 -2.3546 20 7 4.7888 -9.2240 -2.2837 21 6 6.0131 -9.3915 -1.8219 22 6 6.7620 -8.3085 -1.3864 23 7 8.0292 -8.1618 -0.8666 24 1 8.6613 -8.8806 -0.7097 25 6 8.2504 -6.8392 -0.6082 26 6 7.1615 -6.1232 -0.9466 27 6 6.1927 -7.0201 -1.4455 28 6 2.4128 -4.0349 -1.4538 29 1 -0.4850 0.8401 0.0040 30 1 0.3556 -2.3880 -0.0013 31 1 0.9098 -4.4761 1.6162 32 1 0.2814 -4.8753 -0.0005 33 1 2.8756 -5.9460 1.2004 34 1 1.3457 -6.8489 1.0786 35 1 2.9507 -7.3631 -0.7953 36 1 1.4007 -6.6964 -1.3659 37 1 3.2021 -7.9643 -2.7373 38 1 6.4371 -10.3839 -1.7822 39 1 9.1605 -6.4297 -0.1951 40 1 7.0491 -5.0532 -0.8525 41 1 1.5074 -4.0509 -2.0606 42 1 3.1148 -3.3069 -1.8604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999606285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:19 Heat of formation + Delta-G solvation = 55.818684 kcal Electronic energy + Delta-G solvation = -25990.866399 eV Core-core repulsion = 22357.856955 eV Total energy + Delta-G solvation = -3633.009443 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.03674 -39.88201 -38.15034 -37.18799 -34.46872 -32.89499 -32.17904 -31.15918 -30.28573 -29.96828 -28.11353 -25.71688 -24.08683 -23.77432 -22.86023 -21.81949 -21.38691 -20.41564 -19.31836 -18.12393 -17.54562 -17.05952 -16.73274 -15.83331 -15.48642 -15.17411 -15.00362 -14.85008 -14.33227 -14.14680 -13.90459 -13.52683 -13.39190 -13.34798 -12.96473 -12.75040 -12.56512 -12.38901 -12.22635 -12.12187 -11.30544 -11.02051 -10.80494 -10.64069 -10.55281 -10.44940 -10.21162 -10.20411 -9.80444 -9.68515 -9.39068 -9.04028 -8.89312 -8.33098 -8.13145 -6.98000 -5.76640 -3.06406 0.43297 1.19125 2.44417 2.64179 2.87875 3.20736 3.47332 3.51131 3.52947 3.68915 4.19142 4.38238 4.49626 4.60237 4.65093 4.82358 4.97205 4.99432 5.08699 5.14886 5.31560 5.45611 5.50955 5.59171 5.61656 5.70246 5.83677 5.92679 5.96725 6.08079 6.18819 6.20645 6.24875 6.31489 6.39176 6.52355 6.59233 6.77046 6.85614 7.03887 7.05721 7.65986 7.72946 7.74610 8.37538 8.42273 9.53329 10.07490 10.42913 11.45594 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.003492 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.688424 B = 8017.213767 C = 8881.540556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.243 4.243 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.129 4.129 14 C 0.099 3.901 15 N -0.597 5.597 16 C 0.560 3.440 17 O -0.530 6.530 18 C -0.122 4.122 19 C 0.088 3.912 20 N -0.469 5.469 21 C 0.126 3.874 22 C 0.025 3.975 23 N -0.578 5.578 24 H 0.421 0.579 25 C 0.069 3.931 26 C -0.196 4.196 27 C -0.031 4.031 28 C 0.093 3.907 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.179 0.821 40 H 0.153 0.847 41 H 0.063 0.937 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.226 -22.171 0.193 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.374 4.374 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.164 4.164 13 C -0.168 4.168 14 C -0.024 4.024 15 N -0.330 5.330 16 C 0.347 3.653 17 O -0.407 6.407 18 C -0.127 4.127 19 C -0.064 4.064 20 N -0.177 5.177 21 C -0.041 4.041 22 C -0.085 4.085 23 N -0.181 5.181 24 H 0.259 0.741 25 C -0.061 4.061 26 C -0.220 4.220 27 C -0.043 4.043 28 C -0.031 4.031 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.179 0.821 38 H 0.173 0.827 39 H 0.196 0.804 40 H 0.171 0.829 41 H 0.082 0.918 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.162 -22.258 -0.389 25.861 hybrid contribution 0.897 1.383 0.330 1.681 sum 14.059 -20.875 -0.058 25.168 Atomic orbital electron populations 1.69650 1.05120 1.25867 1.57422 1.24735 0.95500 0.97716 1.02657 0.86271 0.78568 0.83423 0.77982 1.21094 1.21684 1.21225 1.19228 0.91068 0.83999 1.43113 0.91110 1.42369 1.05810 0.99562 1.88097 1.20484 0.94949 0.86454 0.92344 0.93162 1.21828 0.98711 0.94086 1.01805 1.21870 1.00859 0.98185 0.95842 1.21957 0.97025 0.89460 0.93973 1.48223 1.18648 1.11228 1.54897 1.17996 0.80933 0.87090 0.79313 1.90811 1.63940 1.43725 1.42256 1.20438 0.93946 0.95199 1.03150 1.22606 0.99620 0.86117 0.98041 1.67576 1.09752 1.25755 1.14636 1.21838 0.89719 0.96551 0.95966 1.19304 0.87617 0.96788 1.04788 1.41751 1.12915 1.08595 1.54824 0.74061 1.22139 1.00422 0.82128 1.01375 1.20783 0.93045 1.00357 1.07861 1.18140 0.93191 0.93061 0.99875 1.22828 0.97882 0.81291 1.01121 0.93417 0.78047 0.91423 0.91959 0.91710 0.91007 0.89904 0.91079 0.82139 0.82723 0.80362 0.82944 0.91832 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 2 C -0.01 -0.29 5.50 -17.44 -0.10 -0.38 16 3 Si 0.91 22.72 29.55 -169.99 -5.02 17.69 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.81 9.93 -15.06 -0.15 -6.96 16 8 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 9 N -0.72 -17.92 5.12 -53.31 -0.27 -18.19 16 10 C 0.17 3.39 2.92 -67.81 -0.20 3.19 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -2.01 5.35 -26.69 -0.14 -2.15 16 13 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 14 C 0.10 1.23 5.55 -3.71 -0.02 1.21 16 15 N -0.60 -9.63 2.97 -174.05 -0.52 -10.15 16 16 C 0.56 9.69 7.16 -12.54 -0.09 9.60 16 17 O -0.53 -11.23 16.52 5.28 0.09 -11.14 16 18 C -0.12 -1.74 4.91 -104.63 -0.51 -2.26 16 19 C 0.09 1.08 8.61 -17.14 -0.15 0.93 16 20 N -0.47 -5.45 10.30 -12.85 -0.13 -5.58 16 21 C 0.13 1.20 11.22 -17.35 -0.19 1.01 16 22 C 0.03 0.26 7.31 -84.00 -0.61 -0.36 16 23 N -0.58 -4.02 6.13 -10.63 -0.07 -4.09 16 24 H 0.42 1.29 8.96 -40.82 -0.37 0.93 16 25 C 0.07 0.55 11.84 -16.72 -0.20 0.35 16 26 C -0.20 -2.37 10.73 -39.76 -0.43 -2.80 16 27 C -0.03 -0.41 6.07 -106.58 -0.65 -1.06 16 28 C 0.09 1.80 6.01 -3.71 -0.02 1.77 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.39 10.10 7.80 -40.82 -0.32 9.78 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.08 0.93 4.73 -51.93 -0.25 0.68 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.16 1.73 7.36 -52.49 -0.39 1.34 16 38 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 39 H 0.18 0.72 8.06 -52.48 -0.42 0.29 16 40 H 0.15 2.01 8.06 -52.48 -0.42 1.58 16 41 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 42 H 0.09 2.05 7.03 -51.93 -0.36 1.68 16 LS Contribution 347.29 15.07 5.23 5.23 Total: -1.00 -35.18 347.29 -9.04 -44.22 By element: Atomic # 1 Polarization: 14.55 SS G_CDS: -5.45 Total: 9.10 kcal Atomic # 6 Polarization: 3.92 SS G_CDS: -3.62 Total: 0.30 kcal Atomic # 7 Polarization: -65.14 SS G_CDS: -0.26 Total: -65.41 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.09 Total: -11.14 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.18 -9.04 -44.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999606285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.037 kcal (2) G-P(sol) polarization free energy of solvation -35.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds