Wall clock time and date at job start Fri Apr 10 2020 23:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86807 * 120.00010 * 2 1 4 4 H 1.48500 * 109.46827 * 240.27610 * 3 2 1 5 5 H 1.48507 * 109.47022 * 0.27137 * 3 2 1 6 6 H 1.48497 * 109.47323 * 120.27302 * 3 2 1 7 7 C 1.38804 * 120.00174 * 180.27128 * 2 1 3 8 8 H 1.08009 * 120.00300 * 179.72273 * 7 2 1 9 9 N 1.36942 * 120.00249 * 359.72875 * 7 2 1 10 10 C 1.46496 * 120.00305 * 179.97438 * 9 7 2 11 11 H 1.08997 * 109.49661 * 34.93161 * 10 9 7 12 12 C 1.53037 * 109.49555 * 154.99860 * 10 9 7 13 13 C 1.53046 * 109.53453 * 181.31511 * 12 10 9 14 14 C 1.53184 * 109.31581 * 298.63377 * 13 12 10 15 15 N 1.46933 * 108.77441 * 54.63418 * 14 13 12 16 16 C 1.34776 * 120.63007 * 126.41173 * 15 14 13 17 17 O 1.21602 * 120.00228 * 175.83493 * 16 15 14 18 18 C 1.47386 * 119.99712 * 355.84467 * 16 15 14 19 19 C 1.39249 * 120.83722 * 54.14314 * 18 16 15 20 20 N 1.31915 * 120.96326 * 179.72011 * 19 18 16 21 21 C 1.31921 * 122.72381 * 0.55266 * 20 19 18 22 22 C 1.38689 * 120.78945 * 359.74317 * 21 20 19 23 23 N 1.37752 * 134.29949 * 179.97438 * 22 21 20 24 24 H 0.96998 * 125.56405 * 0.02562 * 23 22 21 25 25 C 1.36568 * 108.87895 * 180.02562 * 23 22 21 26 26 C 1.34640 * 109.66007 * 359.97438 * 25 23 22 27 27 C 1.40984 * 118.84515 * 359.97438 * 22 21 20 28 28 C 1.46923 * 118.74028 * 306.39536 * 15 14 13 29 29 H 0.97007 * 120.00034 * 359.72823 * 1 2 3 30 30 H 0.96997 * 119.99423 * 359.97438 * 9 7 2 31 31 H 1.09001 * 109.46004 * 301.33351 * 12 10 9 32 32 H 1.08995 * 109.46277 * 61.30870 * 12 10 9 33 33 H 1.09006 * 109.49319 * 58.58826 * 13 12 10 34 34 H 1.09000 * 109.49281 * 178.68098 * 13 12 10 35 35 H 1.09001 * 109.58845 * 174.42176 * 14 13 12 36 36 H 1.08997 * 109.58874 * 294.70890 * 14 13 12 37 37 H 1.07994 * 119.51830 * 359.97438 * 19 18 16 38 38 H 1.07992 * 119.60224 * 179.72122 * 21 20 19 39 39 H 1.08004 * 125.17042 * 179.97438 * 25 23 22 40 40 H 1.08003 * 126.09296 * 179.97438 * 26 25 23 41 41 H 1.09001 * 109.58348 * 293.81914 * 28 15 14 42 42 H 1.09000 * 109.58612 * 173.39489 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.0988 1.6993 -1.2159 5 1 1.2851 2.7465 0.0066 6 1 3.1089 1.6936 1.2091 7 6 2.0102 -1.2020 -0.0057 8 1 3.0903 -1.2021 -0.0102 9 7 1.3256 -2.3881 -0.0057 10 6 2.0581 -3.6567 -0.0123 11 1 2.9721 -3.5521 0.5722 12 6 1.1839 -4.7544 0.5985 13 6 1.9604 -6.0731 0.6221 14 6 2.3139 -6.4786 -0.8121 15 7 3.0300 -5.3682 -1.4547 16 6 4.2301 -5.5689 -2.0343 17 8 4.7780 -4.6603 -2.6285 18 6 4.8783 -6.8897 -1.9482 19 6 4.2090 -8.0412 -2.3546 20 7 4.7888 -9.2240 -2.2837 21 6 6.0131 -9.3915 -1.8219 22 6 6.7620 -8.3085 -1.3864 23 7 8.0292 -8.1618 -0.8666 24 1 8.6613 -8.8806 -0.7097 25 6 8.2504 -6.8392 -0.6082 26 6 7.1615 -6.1232 -0.9466 27 6 6.1927 -7.0201 -1.4455 28 6 2.4128 -4.0349 -1.4538 29 1 -0.4850 0.8401 0.0040 30 1 0.3556 -2.3880 -0.0013 31 1 0.9098 -4.4761 1.6162 32 1 0.2814 -4.8753 -0.0005 33 1 2.8756 -5.9460 1.2004 34 1 1.3457 -6.8489 1.0786 35 1 2.9507 -7.3631 -0.7953 36 1 1.4007 -6.6964 -1.3659 37 1 3.2021 -7.9643 -2.7373 38 1 6.4371 -10.3839 -1.7822 39 1 9.1605 -6.4297 -0.1951 40 1 7.0491 -5.0532 -0.8525 41 1 1.5074 -4.0509 -2.0606 42 1 3.1148 -3.3069 -1.8604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999606285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:19 Heat of formation + Delta-G solvation = 30.209710 kcal Electronic energy + Delta-G solvation = -25991.976887 eV Core-core repulsion = 22357.856955 eV Total energy + Delta-G solvation = -3634.119932 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.84878 -41.15181 -39.05885 -38.62243 -36.23756 -34.16790 -33.47079 -32.76984 -31.19619 -30.88340 -29.74329 -26.95355 -25.90632 -24.90504 -23.75646 -23.20882 -22.37966 -21.61205 -20.54030 -19.23366 -19.00264 -18.59489 -17.67126 -17.05974 -16.82941 -16.49392 -16.00760 -15.81103 -15.68974 -15.54096 -15.39858 -15.04167 -14.91110 -14.34469 -14.09110 -13.92099 -13.81011 -13.62888 -13.44283 -13.10468 -13.00564 -12.88110 -12.51173 -12.26251 -12.04189 -11.93207 -11.73690 -11.48452 -11.38040 -11.14345 -11.09025 -10.51634 -9.80018 -9.65329 -9.04250 -8.97502 -7.99041 -5.28598 -0.43280 0.35856 1.43483 1.46366 1.48728 1.53083 1.70058 1.95904 2.06433 2.53166 2.78096 3.28318 3.34044 3.55605 3.69981 3.75504 3.86735 3.95560 4.02226 4.10815 4.13262 4.21042 4.31269 4.35922 4.43509 4.57285 4.66981 4.70388 4.76824 4.85413 4.87994 5.01299 5.09480 5.12518 5.35671 5.37848 5.41524 5.42599 5.46762 5.54778 5.79268 6.23332 6.36464 6.56925 6.89484 7.06155 7.30154 8.01572 8.27877 9.23395 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018567 B = 0.003492 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.688424 B = 8017.213767 C = 8881.540556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.968 3.032 4 H -0.284 1.284 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.248 4.248 8 H 0.064 0.936 9 N -0.728 5.728 10 C 0.169 3.831 11 H 0.029 0.971 12 C -0.117 4.117 13 C -0.119 4.119 14 C 0.096 3.904 15 N -0.595 5.595 16 C 0.559 3.441 17 O -0.586 6.586 18 C -0.156 4.156 19 C 0.098 3.902 20 N -0.485 5.485 21 C 0.147 3.853 22 C 0.019 3.981 23 N -0.552 5.552 24 H 0.445 0.555 25 C 0.114 3.886 26 C -0.256 4.256 27 C -0.058 4.058 28 C 0.108 3.892 29 H 0.254 0.746 30 H 0.378 0.622 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.057 0.943 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.094 0.906 37 H 0.172 0.828 38 H 0.200 0.800 39 H 0.224 0.776 40 H 0.123 0.877 41 H 0.063 0.937 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.988 -25.782 1.080 29.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.215 1.215 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.368 5.368 10 C 0.059 3.941 11 H 0.048 0.952 12 C -0.155 4.155 13 C -0.158 4.158 14 C -0.025 4.025 15 N -0.326 5.326 16 C 0.348 3.652 17 O -0.467 6.467 18 C -0.162 4.162 19 C -0.053 4.053 20 N -0.194 5.194 21 C -0.019 4.019 22 C -0.092 4.092 23 N -0.156 5.156 24 H 0.288 0.712 25 C -0.018 4.018 26 C -0.281 4.281 27 C -0.070 4.070 28 C -0.018 4.018 29 H 0.062 0.938 30 H 0.211 0.789 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.112 0.888 37 H 0.189 0.811 38 H 0.217 0.783 39 H 0.241 0.759 40 H 0.142 0.858 41 H 0.082 0.918 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 14.948 -25.970 0.520 29.969 hybrid contribution 0.514 2.380 0.076 2.436 sum 15.462 -23.590 0.595 28.211 Atomic orbital electron populations 1.69783 1.06320 1.26300 1.58908 1.25478 0.96391 1.00774 1.03220 0.85302 0.77407 0.79546 0.78068 1.21029 1.21453 1.20254 1.19481 0.91029 0.85500 1.42009 0.91778 1.42485 1.05540 1.00503 1.88287 1.20615 0.94638 0.86180 0.92630 0.95243 1.21732 0.98514 0.94141 1.01113 1.21847 1.00654 0.97143 0.96106 1.22264 0.97880 0.88575 0.93771 1.48228 1.18724 1.10769 1.54913 1.18583 0.80598 0.87984 0.78079 1.90760 1.65233 1.45957 1.44710 1.20187 0.95105 0.93732 1.07161 1.22719 0.99921 0.85762 0.96865 1.67701 1.10924 1.24816 1.15958 1.22561 0.88639 0.98036 0.92673 1.19351 0.88760 0.95568 1.05517 1.41760 1.12084 1.09012 1.52750 0.71190 1.22668 0.99978 0.81834 0.97353 1.20775 0.95457 0.99687 1.12146 1.18474 0.93200 0.95081 1.00206 1.22286 0.96781 0.82601 1.00097 0.93761 0.78895 0.91805 0.91069 0.92459 0.87045 0.87971 0.88796 0.81138 0.78346 0.75913 0.85846 0.91843 0.93305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.58 13.06 21.65 0.28 -59.30 16 2 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 3 Si 0.97 47.91 29.55 68.60 2.03 49.94 16 4 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 5 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 6 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 7 C -0.25 -14.50 9.93 84.03 0.83 -13.66 16 8 H 0.06 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.73 -37.96 5.12 -322.58 -1.65 -39.61 16 10 C 0.17 7.10 2.92 45.07 0.13 7.23 16 11 H 0.03 1.35 8.08 -2.39 -0.02 1.33 16 12 C -0.12 -3.68 5.35 30.62 0.16 -3.51 16 13 C -0.12 -2.79 6.08 30.67 0.19 -2.60 16 14 C 0.10 2.26 5.55 86.36 0.48 2.74 16 15 N -0.59 -19.93 2.97 -822.84 -2.45 -22.37 16 16 C 0.56 20.56 7.16 86.65 0.62 21.18 16 17 O -0.59 -27.15 16.52 -4.04 -0.07 -27.22 16 18 C -0.16 -4.55 4.91 -19.87 -0.10 -4.65 16 19 C 0.10 2.30 8.61 84.92 0.73 3.03 16 20 N -0.49 -9.95 10.30 -194.57 -2.00 -11.95 16 21 C 0.15 2.25 11.22 84.79 0.95 3.20 16 22 C 0.02 0.33 7.31 38.99 0.29 0.61 16 23 N -0.55 -5.44 6.13 -187.55 -1.15 -6.59 16 24 H 0.45 0.34 8.96 -92.71 -0.83 -0.49 16 25 C 0.11 1.48 11.84 83.13 0.98 2.46 16 26 C -0.26 -6.33 10.73 22.16 0.24 -6.09 16 27 C -0.06 -1.54 6.07 -21.14 -0.13 -1.67 16 28 C 0.11 4.43 6.01 86.36 0.52 4.95 16 29 H 0.25 15.18 8.31 -92.70 -0.77 14.41 16 30 H 0.38 20.57 7.80 -92.71 -0.72 19.85 16 31 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 32 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.06 1.45 8.14 -2.38 -0.02 1.44 16 34 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.10 2.09 4.73 -2.39 -0.01 2.08 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.17 3.44 7.36 -2.91 -0.02 3.42 16 38 H 0.20 1.20 8.06 -2.91 -0.02 1.18 16 39 H 0.22 0.78 8.06 -2.91 -0.02 0.76 16 40 H 0.12 3.66 8.06 -2.91 -0.02 3.64 16 41 H 0.06 2.57 8.14 -2.39 -0.02 2.56 16 42 H 0.05 2.40 7.03 -2.39 -0.02 2.39 16 Total: -1.00 -83.11 347.29 0.87 -82.24 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -0.48 Total: 25.05 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: 6.36 Total: 9.82 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -6.97 Total: -139.82 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -0.07 Total: -27.22 kcal Atomic # 14 Polarization: 47.91 SS G_CDS: 2.03 Total: 49.94 kcal Total: -83.11 0.87 -82.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999606285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.447 kcal (2) G-P(sol) polarization free energy of solvation -83.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds