Wall clock time and date at job start Fri Apr 10 2020 23:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99591 * 2 1 4 4 H 1.48504 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47319 * 299.99912 * 3 2 1 6 6 H 1.48503 * 109.47410 * 60.00333 * 3 2 1 7 7 C 1.38806 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00216 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99927 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.49868 * 324.99288 * 10 9 7 12 12 C 1.53046 * 109.52199 * 204.91492 * 10 9 7 13 13 C 1.53042 * 109.53705 * 178.66548 * 12 10 9 14 14 C 1.53184 * 109.31216 * 61.36740 * 13 12 10 15 15 N 1.46923 * 108.77683 * 305.36404 * 14 13 12 16 16 C 1.34779 * 120.63528 * 233.58546 * 15 14 13 17 17 O 1.21631 * 120.00738 * 174.20468 * 16 15 14 18 18 C 1.47314 * 119.99499 * 354.20678 * 16 15 14 19 19 C 1.46605 * 120.61513 * 319.87216 * 18 16 15 20 20 C 1.34232 * 119.80739 * 179.69671 * 19 18 16 21 21 N 1.37389 * 120.95601 * 0.58814 * 20 19 18 22 22 C 1.34896 * 132.30997 * 179.69359 * 21 20 19 23 23 N 1.30984 * 109.50729 * 180.02562 * 22 21 20 24 24 C 1.33128 * 109.93356 * 359.97438 * 23 22 21 25 25 C 1.38187 * 120.82571 * 359.69063 * 21 20 19 26 26 C 1.38587 * 120.61172 * 140.14951 * 18 16 15 27 27 C 1.46924 * 118.74044 * 53.61081 * 15 14 13 28 28 H 0.97006 * 120.00208 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00229 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.45912 * 298.68947 * 12 10 9 31 31 H 1.09003 * 109.45886 * 58.64863 * 12 10 9 32 32 H 1.09002 * 109.49774 * 301.41361 * 13 12 10 33 33 H 1.08998 * 109.52209 * 181.33762 * 13 12 10 34 34 H 1.09004 * 109.59011 * 185.57796 * 14 13 12 35 35 H 1.08998 * 109.70720 * 65.21856 * 14 13 12 36 36 H 1.07994 * 120.09780 * 0.02562 * 19 18 16 37 37 H 1.08004 * 119.52202 * 180.25237 * 20 19 18 38 38 H 1.08000 * 125.24818 * 359.97438 * 22 21 20 39 39 H 1.07997 * 126.31696 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.48837 * 0.02562 * 26 18 16 41 41 H 1.09001 * 109.59235 * 186.60844 * 27 15 14 42 42 H 1.09001 * 109.70657 * 66.24779 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 1 2.9694 -3.5507 -0.5903 12 6 1.1815 -4.7535 -0.6104 13 6 1.9584 -6.0717 -0.6411 14 6 2.3195 -6.4804 0.7904 15 7 3.0383 -5.3711 1.4318 16 6 4.2415 -5.5724 2.0049 17 8 4.8740 -4.6286 2.4390 18 6 4.7904 -6.9358 2.1054 19 6 3.9219 -8.0672 2.4441 20 6 4.4381 -9.3037 2.5254 21 7 5.7760 -9.5267 2.3071 22 6 6.5259 -10.6477 2.3335 23 7 7.7703 -10.3481 2.0553 24 6 7.8846 -9.0396 1.8382 25 6 6.6255 -8.4835 1.9915 26 6 6.1385 -7.1716 1.8871 27 6 2.4204 -4.0381 1.4372 28 1 -0.4851 0.8401 -0.0004 29 1 0.3556 -2.3881 -0.0016 30 1 0.2820 -4.8761 -0.0072 31 1 0.9020 -4.4730 -1.6260 32 1 2.8706 -5.9429 -1.2238 33 1 1.3424 -6.8471 -1.0965 34 1 2.9568 -7.3645 0.7683 35 1 1.4104 -6.6991 1.3505 36 1 2.8689 -7.9072 2.6225 37 1 3.7932 -10.1345 2.7713 38 1 6.1573 -11.6392 2.5513 39 1 8.7917 -8.5095 1.5884 40 1 6.8043 -6.3577 1.6407 41 1 3.1241 -3.3106 1.8418 42 1 1.5185 -4.0535 2.0492 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999623259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:22 Heat of formation + Delta-G solvation = 76.373800 kcal Electronic energy + Delta-G solvation = -25608.576785 eV Core-core repulsion = 21976.458678 eV Total energy + Delta-G solvation = -3632.118106 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.02894 -40.16650 -37.59436 -37.01253 -34.56540 -33.58567 -32.40284 -31.39597 -31.01431 -28.84943 -28.17362 -25.71591 -24.36988 -23.68642 -23.20978 -22.14959 -21.93686 -20.41974 -19.13473 -18.26593 -17.78556 -17.12638 -16.25242 -16.21519 -15.96222 -15.31723 -15.05588 -14.81620 -14.57674 -14.27855 -14.16150 -13.81471 -13.63312 -13.45608 -13.07259 -12.87398 -12.48747 -12.46472 -12.15669 -12.03627 -11.38235 -11.13197 -10.92389 -10.88186 -10.71399 -10.63985 -10.61312 -10.20349 -9.91685 -9.86722 -9.70294 -9.50504 -9.12223 -8.44699 -7.86672 -7.03570 -5.81657 -3.11677 0.31259 0.76862 2.24626 2.53188 2.75662 2.99114 3.27661 3.42895 3.49564 3.51873 4.02801 4.20322 4.27841 4.32891 4.55401 4.60271 4.63374 4.83740 5.01224 5.08645 5.15239 5.26144 5.29733 5.42738 5.46224 5.53832 5.57776 5.72466 5.75076 5.88079 5.96219 6.09185 6.10727 6.15783 6.20282 6.28630 6.42892 6.65255 6.77303 6.79383 6.94734 7.51118 7.52885 7.70005 8.22643 8.36533 9.48510 10.01804 10.37015 11.40579 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025183 B = 0.002903 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.594093 B = 9644.520680 C =10332.733878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.242 4.242 8 H 0.073 0.927 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.100 3.900 15 N -0.598 5.598 16 C 0.559 3.441 17 O -0.532 6.532 18 C -0.138 4.138 19 C -0.105 4.105 20 C 0.038 3.962 21 N -0.366 5.366 22 C 0.149 3.851 23 N -0.461 5.461 24 C 0.003 3.997 25 C -0.013 4.013 26 C -0.004 4.004 27 C 0.092 3.908 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.158 0.842 37 H 0.170 0.830 38 H 0.212 0.788 39 H 0.185 0.815 40 H 0.157 0.843 41 H 0.092 0.908 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.287 -23.814 3.183 24.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.373 4.373 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.023 4.023 15 N -0.331 5.331 16 C 0.346 3.654 17 O -0.409 6.409 18 C -0.144 4.144 19 C -0.126 4.126 20 C -0.080 4.080 21 N -0.038 5.038 22 C -0.126 4.126 23 N -0.174 5.174 24 C -0.153 4.153 25 C -0.121 4.121 26 C -0.025 4.025 27 C -0.033 4.033 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.175 0.825 37 H 0.187 0.813 38 H 0.228 0.772 39 H 0.202 0.798 40 H 0.174 0.826 41 H 0.110 0.890 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.281 -23.835 3.397 25.152 hybrid contribution -0.756 1.412 0.122 1.606 sum 6.524 -22.423 3.519 23.616 Atomic orbital electron populations 1.69672 1.05131 1.25690 1.57525 1.24750 0.95525 0.97789 1.02622 0.86119 0.79003 0.83948 0.77181 1.20379 1.21831 1.21771 1.19317 0.91152 0.83931 1.42935 0.90951 1.42384 1.05804 0.99583 1.88085 1.20484 0.94962 0.86470 0.92345 0.93072 1.21833 0.98660 0.94061 1.01919 1.21884 1.00982 0.98279 0.95723 1.22034 0.96771 0.89433 0.94048 1.48178 1.18476 1.11380 1.55020 1.17923 0.81240 0.87535 0.78671 1.90846 1.58623 1.42828 1.48617 1.21049 0.93790 0.93768 1.05805 1.21989 1.00597 0.90045 0.99977 1.21461 0.82414 0.99297 1.04878 1.42928 1.07481 1.09249 1.44112 1.24943 0.86311 0.91793 1.09590 1.69979 1.16944 1.15098 1.15387 1.22779 0.95606 0.89937 1.06950 1.19579 0.92219 0.88896 1.11426 1.20883 0.94158 0.93640 0.93855 1.22852 0.97812 0.81273 1.01319 0.93497 0.78064 0.91991 0.91333 0.91561 0.90949 0.89747 0.91275 0.82495 0.81284 0.77182 0.79832 0.82586 0.88958 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.74 13.06 55.49 0.72 -27.02 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 3 Si 0.91 22.51 29.55 -169.99 -5.02 17.49 16 4 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 7 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.72 -17.46 5.12 -53.31 -0.27 -17.73 16 10 C 0.17 3.24 2.92 -67.80 -0.20 3.04 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.65 16 12 C -0.13 -1.88 5.36 -26.69 -0.14 -2.03 16 13 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 14 C 0.10 1.03 4.93 -3.72 -0.02 1.02 16 15 N -0.60 -8.62 2.97 -174.08 -0.52 -9.14 16 16 C 0.56 8.58 7.35 -12.57 -0.09 8.49 16 17 O -0.53 -10.44 16.35 5.25 0.09 -10.35 16 18 C -0.14 -1.61 5.24 -102.70 -0.54 -2.15 16 19 C -0.11 -0.85 7.56 -37.62 -0.28 -1.14 16 20 C 0.04 0.25 10.92 -16.47 -0.18 0.07 16 21 N -0.37 -3.27 2.94 -62.50 -0.18 -3.46 16 22 C 0.15 1.25 12.70 -90.10 -1.14 0.11 16 23 N -0.46 -5.02 11.18 -13.90 -0.16 -5.18 16 24 C 0.00 0.04 12.04 -16.90 -0.20 -0.17 16 25 C -0.01 -0.13 6.77 -84.12 -0.57 -0.70 16 26 C 0.00 -0.05 9.76 -38.67 -0.38 -0.43 16 27 C 0.09 1.66 6.03 -3.71 -0.02 1.64 16 28 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 29 H 0.39 9.84 7.80 -40.82 -0.32 9.52 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.71 4.71 -51.93 -0.24 0.47 16 35 H 0.07 0.61 8.11 -51.93 -0.42 0.18 16 36 H 0.16 0.97 6.72 -52.49 -0.35 0.61 16 37 H 0.17 0.46 8.06 -52.48 -0.42 0.04 16 38 H 0.21 0.90 8.06 -52.49 -0.42 0.47 16 39 H 0.18 1.44 8.06 -52.49 -0.42 1.01 16 40 H 0.16 1.67 8.06 -52.49 -0.42 1.25 16 41 H 0.09 1.98 7.00 -51.93 -0.36 1.62 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 347.07 15.07 5.23 5.23 Total: -1.00 -34.71 347.07 -9.76 -44.47 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -5.47 Total: 6.78 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -4.18 Total: -1.10 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: -0.41 Total: -62.52 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.35 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.71 -9.76 -44.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999623259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.843 kcal (2) G-P(sol) polarization free energy of solvation -34.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds