Wall clock time and date at job start Fri Apr 10 2020 23:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86799 * 119.99591 * 2 1 4 4 H 1.48504 * 109.46920 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47319 * 299.99912 * 3 2 1 6 6 H 1.48503 * 109.47410 * 60.00333 * 3 2 1 7 7 C 1.38806 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99953 * 180.02562 * 7 2 1 9 9 N 1.36934 * 120.00216 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99927 * 180.02562 * 9 7 2 11 11 H 1.08994 * 109.49868 * 324.99288 * 10 9 7 12 12 C 1.53046 * 109.52199 * 204.91492 * 10 9 7 13 13 C 1.53042 * 109.53705 * 178.66548 * 12 10 9 14 14 C 1.53184 * 109.31216 * 61.36740 * 13 12 10 15 15 N 1.46923 * 108.77683 * 305.36404 * 14 13 12 16 16 C 1.34779 * 120.63528 * 233.58546 * 15 14 13 17 17 O 1.21631 * 120.00738 * 174.20468 * 16 15 14 18 18 C 1.47314 * 119.99499 * 354.20678 * 16 15 14 19 19 C 1.46605 * 120.61513 * 319.87216 * 18 16 15 20 20 C 1.34232 * 119.80739 * 179.69671 * 19 18 16 21 21 N 1.37389 * 120.95601 * 0.58814 * 20 19 18 22 22 C 1.34896 * 132.30997 * 179.69359 * 21 20 19 23 23 N 1.30984 * 109.50729 * 180.02562 * 22 21 20 24 24 C 1.33128 * 109.93356 * 359.97438 * 23 22 21 25 25 C 1.38187 * 120.82571 * 359.69063 * 21 20 19 26 26 C 1.38587 * 120.61172 * 140.14951 * 18 16 15 27 27 C 1.46924 * 118.74044 * 53.61081 * 15 14 13 28 28 H 0.97006 * 120.00208 * 0.02562 * 1 2 3 29 29 H 0.97003 * 120.00229 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.45912 * 298.68947 * 12 10 9 31 31 H 1.09003 * 109.45886 * 58.64863 * 12 10 9 32 32 H 1.09002 * 109.49774 * 301.41361 * 13 12 10 33 33 H 1.08998 * 109.52209 * 181.33762 * 13 12 10 34 34 H 1.09004 * 109.59011 * 185.57796 * 14 13 12 35 35 H 1.08998 * 109.70720 * 65.21856 * 14 13 12 36 36 H 1.07994 * 120.09780 * 0.02562 * 19 18 16 37 37 H 1.08004 * 119.52202 * 180.25237 * 20 19 18 38 38 H 1.08000 * 125.24818 * 359.97438 * 22 21 20 39 39 H 1.07997 * 126.31696 * 180.02562 * 24 23 22 40 40 H 1.07998 * 120.48837 * 0.02562 * 26 18 16 41 41 H 1.09001 * 109.59235 * 186.60844 * 27 15 14 42 42 H 1.09001 * 109.70657 * 66.24779 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3880 -0.0016 10 6 2.0582 -3.6567 -0.0016 11 1 2.9694 -3.5507 -0.5903 12 6 1.1815 -4.7535 -0.6104 13 6 1.9584 -6.0717 -0.6411 14 6 2.3195 -6.4804 0.7904 15 7 3.0383 -5.3711 1.4318 16 6 4.2415 -5.5724 2.0049 17 8 4.8740 -4.6286 2.4390 18 6 4.7904 -6.9358 2.1054 19 6 3.9219 -8.0672 2.4441 20 6 4.4381 -9.3037 2.5254 21 7 5.7760 -9.5267 2.3071 22 6 6.5259 -10.6477 2.3335 23 7 7.7703 -10.3481 2.0553 24 6 7.8846 -9.0396 1.8382 25 6 6.6255 -8.4835 1.9915 26 6 6.1385 -7.1716 1.8871 27 6 2.4204 -4.0381 1.4372 28 1 -0.4851 0.8401 -0.0004 29 1 0.3556 -2.3881 -0.0016 30 1 0.2820 -4.8761 -0.0072 31 1 0.9020 -4.4730 -1.6260 32 1 2.8706 -5.9429 -1.2238 33 1 1.3424 -6.8471 -1.0965 34 1 2.9568 -7.3645 0.7683 35 1 1.4104 -6.6991 1.3505 36 1 2.8689 -7.9072 2.6225 37 1 3.7932 -10.1345 2.7713 38 1 6.1573 -11.6392 2.5513 39 1 8.7917 -8.5095 1.5884 40 1 6.8043 -6.3577 1.6407 41 1 3.1241 -3.3106 1.8418 42 1 1.5185 -4.0535 2.0492 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999623259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:21 Heat of formation + Delta-G solvation = 54.525815 kcal Electronic energy + Delta-G solvation = -25609.524184 eV Core-core repulsion = 21976.458678 eV Total energy + Delta-G solvation = -3633.065506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.70858 -41.34619 -38.83064 -37.88819 -36.24246 -34.43264 -33.88744 -32.77280 -31.94029 -30.11404 -29.30128 -26.85529 -25.94599 -24.81532 -24.01609 -23.24638 -22.81344 -21.73986 -20.29115 -19.15858 -18.96647 -18.70489 -17.32925 -17.01231 -16.90886 -16.64610 -16.25515 -15.77861 -15.74035 -15.47711 -15.40890 -15.08476 -14.98085 -14.46007 -14.12757 -14.00659 -13.92137 -13.70845 -13.16815 -12.93862 -12.86101 -12.79587 -12.51048 -12.18967 -12.03131 -11.90358 -11.74942 -11.70301 -11.37390 -11.34606 -11.16168 -10.99894 -10.22951 -9.80400 -9.03801 -8.56699 -8.00700 -5.29635 -0.48399 0.14156 1.42747 1.44121 1.52026 1.54128 1.65176 1.88108 2.07176 2.38293 2.51859 3.29508 3.33170 3.46482 3.64391 3.73309 3.79884 3.91017 3.95104 4.00777 4.05200 4.18590 4.31425 4.36967 4.45951 4.56997 4.59452 4.70863 4.73919 4.85482 4.87753 4.89372 4.98737 5.06418 5.13536 5.37177 5.40602 5.42718 5.44944 5.48758 5.55384 6.21914 6.22579 6.37182 6.82544 7.03443 7.29365 8.01252 8.26777 9.22006 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025183 B = 0.002903 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.594093 B = 9644.520680 C =10332.733878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.067 4.067 3 Si 0.966 3.034 4 H -0.274 1.274 5 H -0.288 1.288 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.063 0.937 9 N -0.729 5.729 10 C 0.167 3.833 11 H 0.027 0.973 12 C -0.118 4.118 13 C -0.122 4.122 14 C 0.096 3.904 15 N -0.594 5.594 16 C 0.554 3.446 17 O -0.590 6.590 18 C -0.147 4.147 19 C -0.119 4.119 20 C 0.061 3.939 21 N -0.373 5.373 22 C 0.167 3.833 23 N -0.495 5.495 24 C -0.007 4.007 25 C -0.031 4.031 26 C -0.014 4.014 27 C 0.107 3.893 28 H 0.253 0.747 29 H 0.378 0.622 30 H 0.072 0.928 31 H 0.059 0.941 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.099 0.901 36 H 0.183 0.817 37 H 0.222 0.778 38 H 0.255 0.745 39 H 0.194 0.806 40 H 0.144 0.856 41 H 0.047 0.953 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.432 -27.847 3.407 28.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.260 4.260 3 Si 0.795 3.205 4 H -0.199 1.199 5 H -0.214 1.214 6 H -0.218 1.218 7 C -0.376 4.376 8 H 0.081 0.919 9 N -0.369 5.369 10 C 0.057 3.943 11 H 0.045 0.955 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.025 4.025 15 N -0.326 5.326 16 C 0.344 3.656 17 O -0.472 6.472 18 C -0.153 4.153 19 C -0.139 4.139 20 C -0.056 4.056 21 N -0.044 5.044 22 C -0.108 4.108 23 N -0.209 5.209 24 C -0.162 4.162 25 C -0.140 4.140 26 C -0.035 4.035 27 C -0.019 4.019 28 H 0.062 0.938 29 H 0.211 0.789 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.117 0.883 36 H 0.200 0.800 37 H 0.239 0.761 38 H 0.271 0.729 39 H 0.211 0.789 40 H 0.161 0.839 41 H 0.066 0.934 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 6.436 -27.926 3.600 28.884 hybrid contribution -0.404 2.518 0.057 2.551 sum 6.032 -25.408 3.658 26.369 Atomic orbital electron populations 1.69790 1.06236 1.26112 1.59136 1.25457 0.96397 1.00712 1.03407 0.85185 0.78019 0.80270 0.76983 1.19916 1.21450 1.21768 1.19523 0.90972 0.85511 1.41554 0.91868 1.42503 1.05552 1.00551 1.88286 1.20651 0.94563 0.86169 0.92918 0.95513 1.21742 0.98571 0.94315 1.00980 1.21886 1.00621 0.97001 0.96580 1.22437 0.98145 0.88590 0.93343 1.48176 1.18513 1.10893 1.54970 1.18564 0.80814 0.88665 0.77536 1.90810 1.60177 1.45101 1.51098 1.20830 0.94408 0.92674 1.07376 1.22143 1.01270 0.89154 1.01344 1.22242 0.81618 1.00201 1.01531 1.43170 1.08329 1.08802 1.44142 1.25838 0.85501 0.92936 1.06563 1.69997 1.18767 1.15200 1.16921 1.23081 0.96227 0.90228 1.06676 1.19492 0.92838 0.89010 1.12641 1.20813 0.94140 0.94070 0.94511 1.22263 0.96829 0.82822 0.99949 0.93795 0.78884 0.90895 0.92197 0.92608 0.86824 0.86818 0.88259 0.80017 0.76122 0.72897 0.78923 0.83860 0.93407 0.91450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.59 13.06 21.65 0.28 -58.30 16 2 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.97 47.48 29.55 68.60 2.03 49.51 16 4 H -0.27 -13.11 7.11 99.48 0.71 -12.40 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 6 H -0.29 -14.20 7.11 99.48 0.71 -13.49 16 7 C -0.24 -13.94 9.93 84.03 0.83 -13.10 16 8 H 0.06 3.65 7.83 -2.91 -0.02 3.63 16 9 N -0.73 -36.72 5.12 -322.57 -1.65 -38.38 16 10 C 0.17 6.60 2.92 45.07 0.13 6.73 16 11 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 12 C -0.12 -3.37 5.36 30.62 0.16 -3.21 16 13 C -0.12 -2.37 6.08 30.67 0.19 -2.18 16 14 C 0.10 1.65 4.93 86.36 0.43 2.07 16 15 N -0.59 -16.91 2.97 -822.90 -2.45 -19.36 16 16 C 0.55 17.43 7.35 86.63 0.64 18.07 16 17 O -0.59 -24.90 16.35 -4.13 -0.07 -24.96 16 18 C -0.15 -3.29 5.24 -18.62 -0.10 -3.39 16 19 C -0.12 -1.47 7.56 23.54 0.18 -1.29 16 20 C 0.06 0.50 10.92 82.91 0.91 1.41 16 21 N -0.37 -5.29 2.94 -351.65 -1.03 -6.32 16 22 C 0.17 2.15 12.70 180.17 2.29 4.44 16 23 N -0.50 -9.75 11.18 -197.89 -2.21 -11.96 16 24 C -0.01 -0.13 12.04 84.56 1.02 0.88 16 25 C -0.03 -0.63 6.77 38.71 0.26 -0.36 16 26 C -0.01 -0.32 9.76 22.86 0.22 -0.10 16 27 C 0.11 4.02 6.03 86.36 0.52 4.54 16 28 H 0.25 14.88 8.31 -92.70 -0.77 14.11 16 29 H 0.38 19.90 7.80 -92.71 -0.72 19.17 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 1.40 4.71 -2.38 -0.01 1.39 16 35 H 0.10 1.22 8.11 -2.39 -0.02 1.20 16 36 H 0.18 1.29 6.72 -2.91 -0.02 1.27 16 37 H 0.22 -0.50 8.06 -2.91 -0.02 -0.53 16 38 H 0.26 0.67 8.06 -2.91 -0.02 0.65 16 39 H 0.19 3.08 8.06 -2.91 -0.02 3.05 16 40 H 0.14 3.41 8.06 -2.91 -0.02 3.38 16 41 H 0.05 2.21 7.00 -2.39 -0.02 2.20 16 42 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 Total: -1.00 -81.69 347.07 3.37 -78.33 By element: Atomic # 1 Polarization: 20.05 SS G_CDS: 0.33 Total: 20.38 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 8.14 Total: 11.07 kcal Atomic # 7 Polarization: -127.26 SS G_CDS: -7.06 Total: -134.32 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.07 Total: -24.96 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -81.69 3.37 -78.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999623259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.851 kcal (2) G-P(sol) polarization free energy of solvation -81.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds