Wall clock time and date at job start Fri Apr 10 2020 23:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99843 * 2 1 4 4 H 1.48497 * 109.46975 * 270.27745 * 3 2 1 5 5 H 1.48501 * 109.47162 * 30.27485 * 3 2 1 6 6 H 1.48495 * 109.46947 * 150.27789 * 3 2 1 7 7 C 1.38806 * 120.00017 * 180.28098 * 2 1 3 8 8 H 1.07995 * 120.00545 * 359.71904 * 7 2 1 9 9 N 1.36938 * 120.00127 * 179.72483 * 7 2 1 10 10 C 1.46499 * 120.00372 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49586 * 34.93066 * 10 9 7 12 12 C 1.53044 * 109.50147 * 154.99912 * 10 9 7 13 13 C 1.53031 * 109.53957 * 181.31486 * 12 10 9 14 14 C 1.53192 * 109.31628 * 298.63381 * 13 12 10 15 15 N 1.46920 * 108.77321 * 54.63397 * 14 13 12 16 16 C 1.34777 * 120.63389 * 126.41715 * 15 14 13 17 17 O 1.21638 * 119.99432 * 354.18165 * 16 15 14 18 18 C 1.47301 * 120.00585 * 174.18033 * 16 15 14 19 19 C 1.46612 * 120.61318 * 319.87822 * 18 16 15 20 20 C 1.34235 * 119.80546 * 179.78045 * 19 18 16 21 21 N 1.37387 * 120.95761 * 0.46429 * 20 19 18 22 22 C 1.34897 * 132.31009 * 179.78960 * 21 20 19 23 23 N 1.30993 * 109.50647 * 180.02562 * 22 21 20 24 24 C 1.33128 * 109.93025 * 0.02562 * 23 22 21 25 25 C 1.38185 * 120.82856 * 359.78709 * 21 20 19 26 26 C 1.38586 * 120.61513 * 140.14645 * 18 16 15 27 27 C 1.46926 * 118.74033 * 306.39266 * 15 14 13 28 28 H 0.96999 * 120.00264 * 359.72242 * 1 2 3 29 29 H 0.97004 * 119.99601 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.45544 * 301.33540 * 12 10 9 31 31 H 1.08995 * 109.45829 * 61.30235 * 12 10 9 32 32 H 1.09004 * 109.49889 * 58.58705 * 13 12 10 33 33 H 1.09008 * 109.50037 * 178.64473 * 13 12 10 34 34 H 1.08999 * 109.58952 * 174.42338 * 14 13 12 35 35 H 1.09002 * 109.58529 * 294.85134 * 14 13 12 36 36 H 1.07992 * 120.09834 * 0.02562 * 19 18 16 37 37 H 1.08005 * 119.52048 * 180.23373 * 20 19 18 38 38 H 1.07998 * 125.24460 * 0.02562 * 22 21 20 39 39 H 1.07994 * 126.30739 * 179.97438 * 24 23 22 40 40 H 1.07999 * 120.48897 * 0.02562 * 26 18 16 41 41 H 1.09001 * 109.59125 * 293.82337 * 27 15 14 42 42 H 1.09010 * 109.58851 * 173.39832 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0498 -1.4000 5 1 1.4505 2.6510 0.7058 6 1 3.5506 1.4385 0.6941 7 6 2.0103 -1.2021 -0.0059 8 1 1.4704 -2.1374 -0.0059 9 7 3.3796 -1.2021 -0.0116 10 6 4.1122 -2.4708 -0.0172 11 1 3.5621 -3.2058 -0.6048 12 6 5.4974 -2.2581 -0.6323 13 6 6.2511 -3.5895 -0.6686 14 6 6.4316 -4.1088 0.7612 15 7 5.1146 -4.1785 1.4087 16 6 4.6908 -5.3223 1.9819 17 8 5.3523 -6.3374 1.8751 18 6 3.4266 -5.3431 2.7377 19 6 3.0612 -4.2248 3.6125 20 6 1.9031 -4.2587 4.2904 21 7 1.0539 -5.3335 4.1853 22 6 -0.1394 -5.6068 4.7519 23 7 -0.5639 -6.7743 4.3362 24 6 0.3202 -7.3051 3.4943 25 6 1.3680 -6.4075 3.3745 26 6 2.5632 -6.4227 2.6393 27 6 4.2685 -2.9774 1.4200 28 1 -0.4850 0.8400 0.0041 29 1 3.8646 -0.3620 -0.0119 30 1 5.3892 -1.8742 -1.6468 31 1 6.0557 -1.5412 -0.0304 32 1 5.6812 -4.3145 -1.2498 33 1 7.2282 -3.4420 -1.1287 34 1 6.8791 -5.1024 0.7354 35 1 7.0770 -3.4294 1.3180 36 1 3.7200 -3.3744 3.7082 37 1 1.6368 -3.4306 4.9306 38 1 -0.6639 -4.9624 5.4418 39 1 0.2356 -8.2595 2.9960 40 1 2.8070 -7.2634 2.0068 41 1 4.7375 -2.2056 2.0305 42 1 3.2887 -3.2244 1.8290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999623264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:24 Heat of formation + Delta-G solvation = 78.579695 kcal Electronic energy + Delta-G solvation = -26258.563751 eV Core-core repulsion = 22626.541299 eV Total energy + Delta-G solvation = -3632.022452 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.72139 -40.19025 -37.62168 -36.86216 -34.53768 -33.44820 -32.60281 -31.60991 -30.71922 -28.86669 -28.37360 -25.65785 -24.35621 -23.60060 -23.02068 -21.91544 -21.52297 -20.59761 -19.17665 -17.99772 -17.69189 -17.59807 -16.21806 -15.98026 -15.74922 -15.22075 -14.93000 -14.67850 -14.58907 -14.43647 -14.08193 -13.89054 -13.53871 -13.31869 -12.96067 -12.76918 -12.63434 -12.59698 -11.96479 -11.86866 -11.61207 -11.30890 -11.03109 -10.82843 -10.67830 -10.65376 -10.40980 -10.35318 -10.17118 -9.83041 -9.72314 -9.27070 -9.16997 -8.54326 -7.58060 -7.43314 -5.90687 -3.28972 0.56643 1.10546 2.57474 2.63746 2.98587 3.06012 3.25252 3.29045 3.35460 3.46497 4.35166 4.36132 4.45457 4.56697 4.63927 4.86409 4.89640 4.92690 5.04087 5.07586 5.25438 5.34719 5.37820 5.48399 5.55225 5.58917 5.62809 5.73042 5.81666 5.86068 5.91513 5.96637 6.03733 6.11015 6.17314 6.38862 6.48364 6.49696 6.58592 6.71618 7.10646 7.44995 7.80704 7.83606 8.16493 8.27740 9.04562 9.76575 9.95183 11.26845 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.005369 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.589010 B = 5213.893934 C = 7418.302671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.010 3.990 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.252 4.252 8 H 0.090 0.910 9 N -0.742 5.742 10 C 0.172 3.828 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.129 4.129 14 C 0.112 3.888 15 N -0.599 5.599 16 C 0.569 3.431 17 O -0.547 6.547 18 C -0.140 4.140 19 C -0.103 4.103 20 C 0.046 3.954 21 N -0.362 5.362 22 C 0.154 3.846 23 N -0.462 5.462 24 C 0.002 3.998 25 C -0.014 4.014 26 C -0.003 4.003 27 C 0.078 3.922 28 H 0.261 0.739 29 H 0.363 0.637 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.156 0.844 37 H 0.171 0.829 38 H 0.212 0.788 39 H 0.183 0.817 40 H 0.154 0.846 41 H 0.065 0.935 42 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.548 -8.271 7.041 14.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.186 4.186 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.107 0.893 9 N -0.384 5.384 10 C 0.061 3.939 11 H 0.078 0.922 12 C -0.168 4.168 13 C -0.168 4.168 14 C -0.010 4.010 15 N -0.331 5.331 16 C 0.358 3.642 17 O -0.426 6.426 18 C -0.146 4.146 19 C -0.124 4.124 20 C -0.072 4.072 21 N -0.034 5.034 22 C -0.122 4.122 23 N -0.176 5.176 24 C -0.154 4.154 25 C -0.123 4.123 26 C -0.024 4.024 27 C -0.047 4.047 28 H 0.071 0.929 29 H 0.196 0.804 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.109 0.891 35 H 0.085 0.915 36 H 0.174 0.826 37 H 0.188 0.812 38 H 0.229 0.771 39 H 0.200 0.800 40 H 0.171 0.829 41 H 0.083 0.917 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.824 -9.069 7.306 14.612 hybrid contribution 1.138 1.998 -0.228 2.311 sum 9.963 -7.071 7.078 14.119 Atomic orbital electron populations 1.69704 1.05135 1.26004 1.56664 1.24679 0.95188 0.97211 1.01559 0.86582 0.79149 0.84987 0.77941 1.20960 1.21677 1.20291 1.19038 0.80338 0.94727 1.44053 0.89254 1.42739 1.04109 1.01705 1.89881 1.20461 0.91297 0.89570 0.92543 0.92151 1.21873 0.96511 0.96650 1.01810 1.21866 1.00846 0.97819 0.96246 1.21616 0.83842 1.02566 0.93019 1.48117 1.18335 1.11632 1.55055 1.17928 0.84605 0.83037 0.78678 1.90777 1.57305 1.32711 1.61831 1.20856 0.96539 0.95710 1.01475 1.21912 0.96382 0.98141 0.95925 1.21475 0.91178 0.91064 1.03458 1.42903 1.16087 1.14065 1.30305 1.24946 0.85485 0.97059 1.04666 1.69966 1.28441 1.07016 1.12149 1.22711 0.90271 1.00597 1.01856 1.19533 0.99536 0.91670 1.01566 1.20777 0.89255 0.97171 0.95227 1.23160 0.94818 0.85068 1.01641 0.92897 0.80374 0.91247 0.92108 0.91371 0.90849 0.89136 0.91542 0.82610 0.81180 0.77150 0.79998 0.82871 0.91691 0.88638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.79 13.97 55.49 0.78 -27.01 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 3 Si 0.88 20.68 27.74 -169.99 -4.71 15.96 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -5.98 6.52 56.52 0.37 -5.61 16 7 C -0.25 -6.57 10.41 -15.06 -0.16 -6.73 16 8 H 0.09 2.56 8.06 -52.49 -0.42 2.13 16 9 N -0.74 -15.81 4.93 -53.31 -0.26 -16.07 16 10 C 0.17 2.97 2.92 -67.81 -0.20 2.77 16 11 H 0.06 1.16 8.08 -51.93 -0.42 0.74 16 12 C -0.13 -1.79 5.35 -26.69 -0.14 -1.94 16 13 C -0.13 -1.50 6.08 -26.62 -0.16 -1.66 16 14 C 0.11 1.35 6.44 -3.71 -0.02 1.33 16 15 N -0.60 -8.44 2.97 -174.08 -0.52 -8.96 16 16 C 0.57 8.72 7.35 -12.58 -0.09 8.63 16 17 O -0.55 -9.59 16.35 5.24 0.09 -9.51 16 18 C -0.14 -2.00 5.24 -102.71 -0.54 -2.54 16 19 C -0.10 -1.30 7.56 -37.62 -0.28 -1.58 16 20 C 0.05 0.55 10.92 -16.47 -0.18 0.37 16 21 N -0.36 -4.84 2.94 -62.50 -0.18 -5.03 16 22 C 0.15 1.95 12.70 -90.10 -1.14 0.81 16 23 N -0.46 -6.67 11.18 -13.90 -0.16 -6.83 16 24 C 0.00 0.03 12.03 -16.90 -0.20 -0.18 16 25 C -0.01 -0.20 6.77 -84.12 -0.57 -0.77 16 26 C 0.00 -0.05 9.76 -38.67 -0.38 -0.42 16 27 C 0.08 1.18 4.51 -3.71 -0.02 1.17 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.36 7.59 5.66 -40.82 -0.23 7.36 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 34 H 0.09 1.13 7.00 -51.93 -0.36 0.77 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.16 1.73 6.72 -52.49 -0.35 1.38 16 37 H 0.17 1.47 8.06 -52.48 -0.42 1.05 16 38 H 0.21 1.85 8.06 -52.49 -0.42 1.42 16 39 H 0.18 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 41 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 42 H 0.10 1.57 4.71 -51.92 -0.24 1.33 16 LS Contribution 343.96 15.07 5.18 5.18 Total: -1.00 -33.22 343.96 -9.40 -42.62 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -5.43 Total: 10.19 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -4.19 Total: -0.55 kcal Atomic # 7 Polarization: -63.55 SS G_CDS: -0.34 Total: -63.90 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.71 Total: 15.96 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.22 -9.40 -42.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999623264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.203 kcal (2) G-P(sol) polarization free energy of solvation -33.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds