Wall clock time and date at job start Fri Apr 10 2020 23:00:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86803 * 119.99843 * 2 1 4 4 H 1.48497 * 109.46975 * 270.27745 * 3 2 1 5 5 H 1.48501 * 109.47162 * 30.27485 * 3 2 1 6 6 H 1.48495 * 109.46947 * 150.27789 * 3 2 1 7 7 C 1.38806 * 120.00017 * 180.28098 * 2 1 3 8 8 H 1.07995 * 120.00545 * 359.71904 * 7 2 1 9 9 N 1.36938 * 120.00127 * 179.72483 * 7 2 1 10 10 C 1.46499 * 120.00372 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49586 * 34.93066 * 10 9 7 12 12 C 1.53044 * 109.50147 * 154.99912 * 10 9 7 13 13 C 1.53031 * 109.53957 * 181.31486 * 12 10 9 14 14 C 1.53192 * 109.31628 * 298.63381 * 13 12 10 15 15 N 1.46920 * 108.77321 * 54.63397 * 14 13 12 16 16 C 1.34777 * 120.63389 * 126.41715 * 15 14 13 17 17 O 1.21638 * 119.99432 * 354.18165 * 16 15 14 18 18 C 1.47301 * 120.00585 * 174.18033 * 16 15 14 19 19 C 1.46612 * 120.61318 * 319.87822 * 18 16 15 20 20 C 1.34235 * 119.80546 * 179.78045 * 19 18 16 21 21 N 1.37387 * 120.95761 * 0.46429 * 20 19 18 22 22 C 1.34897 * 132.31009 * 179.78960 * 21 20 19 23 23 N 1.30993 * 109.50647 * 180.02562 * 22 21 20 24 24 C 1.33128 * 109.93025 * 0.02562 * 23 22 21 25 25 C 1.38185 * 120.82856 * 359.78709 * 21 20 19 26 26 C 1.38586 * 120.61513 * 140.14645 * 18 16 15 27 27 C 1.46926 * 118.74033 * 306.39266 * 15 14 13 28 28 H 0.96999 * 120.00264 * 359.72242 * 1 2 3 29 29 H 0.97004 * 119.99601 * 359.97438 * 9 7 2 30 30 H 1.09006 * 109.45544 * 301.33540 * 12 10 9 31 31 H 1.08995 * 109.45829 * 61.30235 * 12 10 9 32 32 H 1.09004 * 109.49889 * 58.58705 * 13 12 10 33 33 H 1.09008 * 109.50037 * 178.64473 * 13 12 10 34 34 H 1.08999 * 109.58952 * 174.42338 * 14 13 12 35 35 H 1.09002 * 109.58529 * 294.85134 * 14 13 12 36 36 H 1.07992 * 120.09834 * 0.02562 * 19 18 16 37 37 H 1.08005 * 119.52048 * 180.23373 * 20 19 18 38 38 H 1.07998 * 125.24460 * 0.02562 * 22 21 20 39 39 H 1.07994 * 126.30739 * 179.97438 * 24 23 22 40 40 H 1.07999 * 120.48897 * 0.02562 * 26 18 16 41 41 H 1.09001 * 109.59125 * 293.82337 * 27 15 14 42 42 H 1.09010 * 109.58851 * 173.39832 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0498 -1.4000 5 1 1.4505 2.6510 0.7058 6 1 3.5506 1.4385 0.6941 7 6 2.0103 -1.2021 -0.0059 8 1 1.4704 -2.1374 -0.0059 9 7 3.3796 -1.2021 -0.0116 10 6 4.1122 -2.4708 -0.0172 11 1 3.5621 -3.2058 -0.6048 12 6 5.4974 -2.2581 -0.6323 13 6 6.2511 -3.5895 -0.6686 14 6 6.4316 -4.1088 0.7612 15 7 5.1146 -4.1785 1.4087 16 6 4.6908 -5.3223 1.9819 17 8 5.3523 -6.3374 1.8751 18 6 3.4266 -5.3431 2.7377 19 6 3.0612 -4.2248 3.6125 20 6 1.9031 -4.2587 4.2904 21 7 1.0539 -5.3335 4.1853 22 6 -0.1394 -5.6068 4.7519 23 7 -0.5639 -6.7743 4.3362 24 6 0.3202 -7.3051 3.4943 25 6 1.3680 -6.4075 3.3745 26 6 2.5632 -6.4227 2.6393 27 6 4.2685 -2.9774 1.4200 28 1 -0.4850 0.8400 0.0041 29 1 3.8646 -0.3620 -0.0119 30 1 5.3892 -1.8742 -1.6468 31 1 6.0557 -1.5412 -0.0304 32 1 5.6812 -4.3145 -1.2498 33 1 7.2282 -3.4420 -1.1287 34 1 6.8791 -5.1024 0.7354 35 1 7.0770 -3.4294 1.3180 36 1 3.7200 -3.3744 3.7082 37 1 1.6368 -3.4306 4.9306 38 1 -0.6639 -4.9624 5.4418 39 1 0.2356 -8.2595 2.9960 40 1 2.8070 -7.2634 2.0068 41 1 4.7375 -2.2056 2.0305 42 1 3.2887 -3.2244 1.8290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999623264.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:23 Heat of formation + Delta-G solvation = 58.850682 kcal Electronic energy + Delta-G solvation = -26259.419265 eV Core-core repulsion = 22626.541299 eV Total energy + Delta-G solvation = -3632.877966 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.72849 -41.36767 -38.88408 -37.92181 -36.15721 -34.51115 -33.93375 -33.23043 -31.78393 -30.35785 -29.42473 -26.78143 -25.80283 -24.95907 -24.05108 -23.01080 -22.74230 -21.92963 -20.37530 -19.51895 -19.00323 -18.71727 -17.39026 -17.04706 -16.83190 -16.65536 -16.24609 -15.98399 -15.67972 -15.59101 -15.36907 -15.15008 -14.83253 -14.49251 -14.28336 -14.08819 -13.87631 -13.83179 -13.37083 -12.98056 -12.87661 -12.77572 -12.52062 -12.14274 -11.95332 -11.86191 -11.75418 -11.68394 -11.52170 -11.38766 -11.15221 -10.96619 -10.24757 -9.87262 -9.24459 -8.58946 -8.00939 -5.36771 -0.48741 0.11589 1.40759 1.44715 1.48224 1.52257 1.61938 1.87884 2.03544 2.39844 2.50030 3.20434 3.30729 3.42296 3.60808 3.61331 3.74454 3.87340 3.90646 3.94912 4.02944 4.12373 4.28278 4.35869 4.41480 4.52224 4.60413 4.66945 4.69629 4.84893 4.86142 4.90883 4.92698 5.01712 5.09992 5.33277 5.39000 5.42700 5.48223 5.51781 5.76298 6.15127 6.20937 6.27083 6.78471 6.98430 7.08354 7.81218 8.02582 9.20061 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.010188 B = 0.005369 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.589010 B = 5213.893934 C = 7418.302671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.058 4.058 3 Si 0.954 3.046 4 H -0.284 1.284 5 H -0.300 1.300 6 H -0.241 1.241 7 C -0.230 4.230 8 H 0.049 0.951 9 N -0.742 5.742 10 C 0.166 3.834 11 H 0.030 0.970 12 C -0.123 4.123 13 C -0.120 4.120 14 C 0.107 3.893 15 N -0.595 5.595 16 C 0.568 3.432 17 O -0.574 6.574 18 C -0.158 4.158 19 C -0.113 4.113 20 C 0.045 3.955 21 N -0.372 5.372 22 C 0.157 3.843 23 N -0.491 5.491 24 C -0.003 4.003 25 C -0.037 4.037 26 C -0.010 4.010 27 C 0.091 3.909 28 H 0.257 0.743 29 H 0.370 0.630 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.053 0.947 33 H 0.107 0.893 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.171 0.829 37 H 0.205 0.795 38 H 0.247 0.753 39 H 0.204 0.796 40 H 0.159 0.841 41 H 0.085 0.915 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.975 -6.875 7.817 15.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.250 4.250 3 Si 0.781 3.219 4 H -0.210 1.210 5 H -0.227 1.227 6 H -0.165 1.165 7 C -0.361 4.361 8 H 0.067 0.933 9 N -0.385 5.385 10 C 0.057 3.943 11 H 0.048 0.952 12 C -0.161 4.161 13 C -0.159 4.159 14 C -0.014 4.014 15 N -0.326 5.326 16 C 0.358 3.642 17 O -0.455 6.455 18 C -0.163 4.163 19 C -0.134 4.134 20 C -0.072 4.072 21 N -0.043 5.043 22 C -0.118 4.118 23 N -0.205 5.205 24 C -0.159 4.159 25 C -0.145 4.145 26 C -0.031 4.031 27 C -0.034 4.034 28 H 0.066 0.934 29 H 0.204 0.796 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.071 0.929 33 H 0.125 0.875 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.189 0.811 37 H 0.222 0.778 38 H 0.263 0.737 39 H 0.220 0.780 40 H 0.177 0.823 41 H 0.103 0.897 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 11.332 -7.701 8.077 15.904 hybrid contribution 0.335 1.427 -0.494 1.547 sum 11.666 -6.275 7.582 15.263 Atomic orbital electron populations 1.69900 1.07347 1.26682 1.59346 1.25479 0.95947 1.01212 1.02344 0.85439 0.79030 0.79497 0.77941 1.21014 1.22682 1.16525 1.18888 0.82456 0.93030 1.41684 0.93267 1.42639 1.02358 1.03526 1.89990 1.20627 0.92667 0.87246 0.93758 0.95170 1.21807 0.94313 0.98343 1.01620 1.21826 1.01987 0.96057 0.95991 1.21843 0.82964 1.03153 0.93444 1.48117 1.18871 1.10848 1.54770 1.18081 0.84679 0.82887 0.78600 1.90755 1.58201 1.33518 1.63056 1.20968 0.96437 0.96677 1.02248 1.22086 0.97140 0.98149 0.95977 1.22047 0.90566 0.91306 1.03272 1.43113 1.16533 1.14320 1.30326 1.25716 0.85093 0.96879 1.04106 1.69987 1.29224 1.08156 1.13120 1.23171 0.89871 1.01341 1.01532 1.19713 0.99925 0.92455 1.02431 1.20908 0.89391 0.97427 0.95398 1.22833 0.94766 0.85808 0.99997 0.93416 0.79559 0.91499 0.90046 0.92863 0.87508 0.89511 0.88935 0.81136 0.77835 0.73716 0.77950 0.82339 0.89683 0.90170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.33 13.97 21.65 0.30 -60.03 16 2 C -0.06 -3.20 5.50 84.86 0.47 -2.74 16 3 Si 0.95 41.92 27.74 68.60 1.90 43.82 16 4 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 5 H -0.30 -13.59 7.11 99.48 0.71 -12.89 16 6 H -0.24 -9.09 6.52 99.48 0.65 -8.44 16 7 C -0.23 -12.09 10.41 84.03 0.88 -11.21 16 8 H 0.05 2.94 8.06 -2.91 -0.02 2.92 16 9 N -0.74 -30.51 4.93 -322.57 -1.59 -32.10 16 10 C 0.17 5.53 2.92 45.07 0.13 5.67 16 11 H 0.03 1.18 8.08 -2.39 -0.02 1.16 16 12 C -0.12 -3.01 5.35 30.62 0.16 -2.85 16 13 C -0.12 -2.44 6.08 30.67 0.19 -2.25 16 14 C 0.11 2.30 6.44 86.36 0.56 2.86 16 15 N -0.59 -15.88 2.97 -822.89 -2.45 -18.33 16 16 C 0.57 17.25 7.35 86.63 0.64 17.89 16 17 O -0.57 -20.12 16.35 -4.15 -0.07 -20.19 16 18 C -0.16 -4.52 5.24 -18.62 -0.10 -4.61 16 19 C -0.11 -2.76 7.56 23.54 0.18 -2.58 16 20 C 0.05 1.03 10.92 82.91 0.91 1.93 16 21 N -0.37 -9.70 2.94 -351.65 -1.03 -10.74 16 22 C 0.16 3.83 12.70 180.16 2.29 6.12 16 23 N -0.49 -14.00 11.18 -197.90 -2.21 -16.21 16 24 C 0.00 -0.09 12.03 84.56 1.02 0.93 16 25 C -0.04 -1.04 6.77 38.71 0.26 -0.78 16 26 C -0.01 -0.29 9.76 22.86 0.22 -0.07 16 27 C 0.09 2.61 4.51 86.36 0.39 3.00 16 28 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 29 H 0.37 14.29 5.66 -92.71 -0.52 13.77 16 30 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.09 1.99 7.00 -2.39 -0.02 1.98 16 35 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.17 3.50 6.72 -2.91 -0.02 3.48 16 37 H 0.20 3.01 8.06 -2.91 -0.02 2.99 16 38 H 0.25 3.77 8.06 -2.91 -0.02 3.75 16 39 H 0.20 4.21 8.06 -2.91 -0.02 4.19 16 40 H 0.16 4.07 8.06 -2.91 -0.02 4.05 16 41 H 0.09 2.15 8.12 -2.39 -0.02 2.13 16 42 H 0.08 2.60 4.71 -2.38 -0.01 2.59 16 Total: -1.00 -74.01 343.96 3.50 -70.51 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: 0.47 Total: 31.97 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 8.18 Total: 11.29 kcal Atomic # 7 Polarization: -130.42 SS G_CDS: -6.98 Total: -137.40 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.07 Total: -20.19 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 1.90 Total: 43.82 kcal Total: -74.01 3.50 -70.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999623264.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.356 kcal (2) G-P(sol) polarization free energy of solvation -74.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds