Wall clock time and date at job start Fri Apr 10 2020 23:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99980 * 2 1 4 4 H 1.48498 * 109.47362 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47105 * 299.99952 * 3 2 1 6 6 H 1.48504 * 109.47532 * 59.99752 * 3 2 1 7 7 C 1.38806 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00185 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00443 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00381 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49793 * 325.00100 * 10 9 7 12 12 C 1.53039 * 109.52671 * 204.91551 * 10 9 7 13 13 C 1.53037 * 109.54089 * 178.66707 * 12 10 9 14 14 C 1.53183 * 109.31441 * 61.36808 * 13 12 10 15 15 N 1.46928 * 108.77422 * 305.36486 * 14 13 12 16 16 C 1.34776 * 120.63504 * 233.58365 * 15 14 13 17 17 O 1.21526 * 120.00468 * 172.08942 * 16 15 14 18 18 C 1.48063 * 119.99776 * 352.09075 * 16 15 14 19 19 C 1.39768 * 119.47136 * 170.33582 * 18 16 15 20 20 C 1.38136 * 119.57076 * 180.02562 * 19 18 16 21 21 C 1.39253 * 118.38472 * 359.97438 * 20 19 18 22 22 N 1.37347 * 133.61675 * 179.97438 * 21 20 19 23 23 H 0.97004 * 125.05082 * 359.97438 * 22 21 20 24 24 C 1.36723 * 109.89646 * 180.02562 * 22 21 20 25 25 C 1.34290 * 110.02086 * 359.97438 * 24 22 21 26 26 C 1.41189 * 119.09480 * 0.02562 * 21 20 19 27 27 N 1.32451 * 119.47155 * 350.06398 * 18 16 15 28 28 C 1.46927 * 118.73792 * 53.60792 * 15 14 13 29 29 H 0.96996 * 120.00197 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99867 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46371 * 298.69354 * 12 10 9 32 32 H 1.09002 * 109.45504 * 58.64598 * 12 10 9 33 33 H 1.09004 * 109.49528 * 301.41213 * 13 12 10 34 34 H 1.09002 * 109.52663 * 181.33555 * 13 12 10 35 35 H 1.08996 * 109.58917 * 185.58206 * 14 13 12 36 36 H 1.08996 * 109.58799 * 65.14922 * 14 13 12 37 37 H 1.07994 * 120.21411 * 0.02562 * 19 18 16 38 38 H 1.08001 * 120.80418 * 179.97438 * 20 19 18 39 39 H 1.07994 * 124.98750 * 179.97438 * 24 22 21 40 40 H 1.07994 * 126.48226 * 180.02562 * 25 24 22 41 41 H 1.09002 * 109.58829 * 186.60040 * 28 15 14 42 42 H 1.09001 * 109.70557 * 66.25076 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9689 -3.5510 -0.5888 12 6 1.1810 -4.7538 -0.6071 13 6 1.9578 -6.0720 -0.6377 14 6 2.3200 -6.4801 0.7936 15 7 3.0393 -5.3705 1.4340 16 6 4.2429 -5.5716 2.0063 17 8 4.8923 -4.6247 2.4044 18 6 4.7738 -6.9463 2.1499 19 6 6.0985 -7.1330 2.5546 20 6 6.5962 -8.4146 2.6887 21 6 5.7499 -9.4856 2.4131 22 7 5.9079 -10.8496 2.4413 23 1 6.7258 -11.3108 2.6849 24 6 4.7415 -11.4608 2.0737 25 6 3.8051 -10.5379 1.8004 26 6 4.4225 -9.2252 2.0086 27 7 3.9842 -7.9794 1.8980 28 6 2.4214 -4.0375 1.4392 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0005 31 1 0.2819 -4.8761 -0.0032 32 1 0.9007 -4.4738 -1.6226 33 1 2.8696 -5.9435 -1.2212 34 1 1.3415 -6.8477 -1.0922 35 1 2.9572 -7.3641 0.7715 36 1 1.4100 -6.6968 1.3531 37 1 6.7289 -6.2808 2.7611 38 1 7.6168 -8.5818 2.9997 39 1 4.5948 -12.5290 2.0122 40 1 2.7894 -10.7272 1.4861 41 1 3.1254 -3.3099 1.8431 42 1 1.5200 -4.0526 2.0519 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999680543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:27 Heat of formation + Delta-G solvation = 69.041154 kcal Electronic energy + Delta-G solvation = -25691.290357 eV Core-core repulsion = 22058.854284 eV Total energy + Delta-G solvation = -3632.436074 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.91884 -39.93247 -37.88304 -36.99406 -34.40492 -33.18957 -32.12426 -31.04770 -30.43469 -29.75665 -28.04768 -25.68139 -23.96538 -23.89285 -22.84398 -21.69480 -21.30150 -20.30026 -19.05365 -18.67897 -17.09195 -17.02235 -16.95554 -15.72645 -15.52547 -15.04787 -14.81418 -14.49796 -14.27287 -14.15342 -13.66919 -13.55541 -13.41039 -13.34045 -13.06688 -12.91286 -12.65572 -12.42751 -12.16975 -12.01272 -11.22244 -10.92361 -10.75576 -10.71606 -10.56437 -10.43364 -10.09461 -9.94786 -9.70244 -9.62447 -9.00296 -8.87250 -8.74900 -8.45375 -8.13545 -6.90666 -5.71260 -3.00376 0.56587 0.80236 2.24487 2.57819 2.91099 3.28432 3.49757 3.55824 3.58744 3.75728 3.88877 4.29632 4.55182 4.60760 4.66048 4.72602 4.91376 5.19892 5.32954 5.39344 5.42081 5.51945 5.55785 5.61470 5.75119 5.84673 5.96816 5.99053 6.03651 6.10717 6.25509 6.31309 6.34259 6.42388 6.51330 6.61968 6.68772 6.94654 6.95404 6.97124 7.17476 7.57415 7.80141 7.84988 8.45540 8.49066 9.58935 10.14139 10.49763 11.51305 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027147 B = 0.002986 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.182449 B = 9375.304270 C =10204.839474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.013 4.013 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.072 0.928 9 N -0.719 5.719 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.131 4.131 14 C 0.075 3.925 15 N -0.582 5.582 16 C 0.565 3.435 17 O -0.539 6.539 18 C 0.083 3.917 19 C -0.097 4.097 20 C -0.092 4.092 21 C 0.062 3.938 22 N -0.590 5.590 23 H 0.419 0.581 24 C 0.065 3.935 25 C -0.183 4.183 26 C 0.082 3.918 27 N -0.407 5.407 28 C 0.090 3.910 29 H 0.254 0.746 30 H 0.385 0.615 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.141 0.859 36 H 0.061 0.939 37 H 0.154 0.846 38 H 0.138 0.862 39 H 0.180 0.820 40 H 0.158 0.842 41 H 0.090 0.910 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.993 -28.504 4.050 30.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.170 4.170 14 C -0.047 4.047 15 N -0.314 5.314 16 C 0.351 3.649 17 O -0.416 6.416 18 C -0.064 4.064 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.049 4.049 22 N -0.194 5.194 23 H 0.256 0.744 24 C -0.062 4.062 25 C -0.208 4.208 26 C -0.053 4.053 27 N -0.119 5.119 28 C -0.034 4.034 29 H 0.064 0.936 30 H 0.219 0.781 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.157 0.843 36 H 0.079 0.921 37 H 0.171 0.829 38 H 0.156 0.844 39 H 0.197 0.803 40 H 0.176 0.824 41 H 0.108 0.892 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.635 -27.774 4.011 30.010 hybrid contribution 1.188 0.545 0.409 1.370 sum 11.823 -27.229 4.420 30.013 Atomic orbital electron populations 1.69675 1.05101 1.25533 1.57878 1.24741 0.95517 0.97711 1.02932 0.86118 0.78985 0.84070 0.77098 1.20419 1.21926 1.21860 1.19343 0.91159 0.83996 1.42406 0.90968 1.42400 1.05809 0.99639 1.88096 1.20479 0.94902 0.86381 0.92403 0.93173 1.21839 0.98719 0.94458 1.01470 1.21927 1.00352 0.97697 0.96982 1.22923 0.98501 0.91355 0.91961 1.48103 1.17951 1.11440 1.53861 1.17830 0.81544 0.86582 0.78970 1.90784 1.57935 1.41831 1.51034 1.21185 0.91724 0.92619 1.00899 1.21765 0.95512 0.97279 0.97305 1.20447 0.99467 0.89886 1.02227 1.19252 0.97446 0.84799 1.03369 1.41622 1.13575 1.04114 1.60107 0.74380 1.21964 0.84741 0.98810 1.00698 1.21616 1.00585 0.87927 1.10717 1.20278 0.90871 0.91901 1.02260 1.67103 1.35203 0.97737 1.11847 1.22815 0.97772 0.81683 1.01161 0.93597 0.78108 0.92164 0.91746 0.92160 0.91312 0.84279 0.92101 0.82873 0.84374 0.80333 0.82427 0.89194 0.91902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.76 13.06 55.49 0.72 -28.03 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 23.22 29.55 -169.99 -5.02 18.19 16 4 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 6 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 7 C -0.24 -6.85 9.93 -15.06 -0.15 -7.00 16 8 H 0.07 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.72 -18.65 5.13 -53.31 -0.27 -18.93 16 10 C 0.17 3.62 2.92 -67.81 -0.20 3.42 16 11 H 0.05 1.14 8.08 -51.93 -0.42 0.72 16 12 C -0.13 -2.21 5.36 -26.69 -0.14 -2.35 16 13 C -0.13 -1.88 6.08 -26.62 -0.16 -2.05 16 14 C 0.08 1.11 5.86 -3.71 -0.02 1.09 16 15 N -0.58 -10.36 2.97 -173.80 -0.52 -10.88 16 16 C 0.56 10.21 7.65 -12.23 -0.09 10.12 16 17 O -0.54 -11.33 15.77 5.34 0.08 -11.24 16 18 C 0.08 1.21 6.57 -83.00 -0.55 0.66 16 19 C -0.10 -1.16 9.60 -39.05 -0.37 -1.53 16 20 C -0.09 -0.82 10.18 -39.24 -0.40 -1.22 16 21 C 0.06 0.56 7.29 -83.90 -0.61 -0.05 16 22 N -0.59 -3.20 6.05 -10.58 -0.06 -3.27 16 23 H 0.42 0.89 8.96 -40.82 -0.37 0.52 16 24 C 0.07 0.32 11.81 -16.76 -0.20 0.12 16 25 C -0.18 -1.43 11.08 -37.63 -0.42 -1.85 16 26 C 0.08 0.91 7.52 -83.10 -0.62 0.29 16 27 N -0.41 -5.48 6.17 -6.43 -0.04 -5.52 16 28 C 0.09 1.85 6.03 -3.71 -0.02 1.83 16 29 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.39 10.46 7.80 -40.82 -0.32 10.14 16 31 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.14 1.95 4.05 -83.85 -0.34 1.62 16 36 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.15 1.76 7.65 -52.49 -0.40 1.35 16 38 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.18 0.16 8.06 -52.49 -0.42 -0.27 16 40 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.09 2.10 7.00 -51.93 -0.36 1.74 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 346.08 15.07 5.22 5.22 Total: -1.00 -35.55 346.08 -9.51 -45.06 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -5.56 Total: 8.40 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -4.06 Total: 1.00 kcal Atomic # 7 Polarization: -66.45 SS G_CDS: -0.17 Total: -66.62 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.24 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.55 -9.51 -45.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999680543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.097 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds