Wall clock time and date at job start Fri Apr 10 2020 23:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 119.99980 * 2 1 4 4 H 1.48498 * 109.47362 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47105 * 299.99952 * 3 2 1 6 6 H 1.48504 * 109.47532 * 59.99752 * 3 2 1 7 7 C 1.38806 * 119.99953 * 179.97438 * 2 1 3 8 8 H 1.08010 * 120.00185 * 180.02562 * 7 2 1 9 9 N 1.36938 * 120.00443 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00381 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49793 * 325.00100 * 10 9 7 12 12 C 1.53039 * 109.52671 * 204.91551 * 10 9 7 13 13 C 1.53037 * 109.54089 * 178.66707 * 12 10 9 14 14 C 1.53183 * 109.31441 * 61.36808 * 13 12 10 15 15 N 1.46928 * 108.77422 * 305.36486 * 14 13 12 16 16 C 1.34776 * 120.63504 * 233.58365 * 15 14 13 17 17 O 1.21526 * 120.00468 * 172.08942 * 16 15 14 18 18 C 1.48063 * 119.99776 * 352.09075 * 16 15 14 19 19 C 1.39768 * 119.47136 * 170.33582 * 18 16 15 20 20 C 1.38136 * 119.57076 * 180.02562 * 19 18 16 21 21 C 1.39253 * 118.38472 * 359.97438 * 20 19 18 22 22 N 1.37347 * 133.61675 * 179.97438 * 21 20 19 23 23 H 0.97004 * 125.05082 * 359.97438 * 22 21 20 24 24 C 1.36723 * 109.89646 * 180.02562 * 22 21 20 25 25 C 1.34290 * 110.02086 * 359.97438 * 24 22 21 26 26 C 1.41189 * 119.09480 * 0.02562 * 21 20 19 27 27 N 1.32451 * 119.47155 * 350.06398 * 18 16 15 28 28 C 1.46927 * 118.73792 * 53.60792 * 15 14 13 29 29 H 0.96996 * 120.00197 * 359.97438 * 1 2 3 30 30 H 0.96999 * 119.99867 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46371 * 298.69354 * 12 10 9 32 32 H 1.09002 * 109.45504 * 58.64598 * 12 10 9 33 33 H 1.09004 * 109.49528 * 301.41213 * 13 12 10 34 34 H 1.09002 * 109.52663 * 181.33555 * 13 12 10 35 35 H 1.08996 * 109.58917 * 185.58206 * 14 13 12 36 36 H 1.08996 * 109.58799 * 65.14922 * 14 13 12 37 37 H 1.07994 * 120.21411 * 0.02562 * 19 18 16 38 38 H 1.08001 * 120.80418 * 179.97438 * 20 19 18 39 39 H 1.07994 * 124.98750 * 179.97438 * 24 22 21 40 40 H 1.07994 * 126.48226 * 180.02562 * 25 24 22 41 41 H 1.09002 * 109.58829 * 186.60040 * 28 15 14 42 42 H 1.09001 * 109.70557 * 66.25076 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 1 2.9689 -3.5510 -0.5888 12 6 1.1810 -4.7538 -0.6071 13 6 1.9578 -6.0720 -0.6377 14 6 2.3200 -6.4801 0.7936 15 7 3.0393 -5.3705 1.4340 16 6 4.2429 -5.5716 2.0063 17 8 4.8923 -4.6247 2.4044 18 6 4.7738 -6.9463 2.1499 19 6 6.0985 -7.1330 2.5546 20 6 6.5962 -8.4146 2.6887 21 6 5.7499 -9.4856 2.4131 22 7 5.9079 -10.8496 2.4413 23 1 6.7258 -11.3108 2.6849 24 6 4.7415 -11.4608 2.0737 25 6 3.8051 -10.5379 1.8004 26 6 4.4225 -9.2252 2.0086 27 7 3.9842 -7.9794 1.8980 28 6 2.4214 -4.0375 1.4392 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0005 31 1 0.2819 -4.8761 -0.0032 32 1 0.9007 -4.4738 -1.6226 33 1 2.8696 -5.9435 -1.2212 34 1 1.3415 -6.8477 -1.0922 35 1 2.9572 -7.3641 0.7715 36 1 1.4100 -6.6968 1.3531 37 1 6.7289 -6.2808 2.7611 38 1 7.6168 -8.5818 2.9997 39 1 4.5948 -12.5290 2.0122 40 1 2.7894 -10.7272 1.4861 41 1 3.1254 -3.3099 1.8431 42 1 1.5200 -4.0526 2.0519 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999680543.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:26 Heat of formation + Delta-G solvation = 44.073203 kcal Electronic energy + Delta-G solvation = -25692.373049 eV Core-core repulsion = 22058.854284 eV Total energy + Delta-G solvation = -3633.518765 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.63501 -41.20415 -39.00519 -38.32422 -36.22484 -34.21017 -33.63968 -32.73934 -31.36504 -30.45000 -29.79077 -26.95392 -25.87769 -24.94863 -23.78643 -23.20587 -22.10949 -21.53957 -20.40089 -19.38382 -19.14549 -18.21100 -17.82751 -17.02823 -16.84162 -16.40038 -15.95381 -15.76473 -15.57902 -15.47892 -15.24485 -15.08403 -14.53758 -14.20535 -14.04785 -14.00784 -13.80842 -13.68697 -13.49696 -13.38444 -12.98552 -12.89660 -12.50714 -12.16617 -12.01357 -11.89434 -11.73428 -11.40521 -11.35563 -11.33804 -11.08942 -9.91297 -9.79392 -9.45139 -9.06479 -9.00507 -7.98755 -5.28433 -0.29979 0.02048 1.43827 1.45225 1.55883 1.66525 1.77743 1.92274 2.10228 2.53488 2.83980 2.96427 3.34005 3.55833 3.67799 3.80544 3.97227 4.00391 4.01514 4.11360 4.25742 4.37640 4.41645 4.45131 4.56839 4.69642 4.73591 4.75757 4.88276 4.96684 4.99472 5.07842 5.11397 5.20845 5.35747 5.39560 5.45056 5.46999 5.48861 5.70216 5.93099 6.23823 6.40882 6.59833 6.72452 7.10406 7.30182 8.01217 8.28276 9.24286 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027147 B = 0.002986 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.182449 B = 9375.304270 C =10204.839474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.244 4.244 8 H 0.065 0.935 9 N -0.729 5.729 10 C 0.170 3.830 11 H 0.030 0.970 12 C -0.117 4.117 13 C -0.121 4.121 14 C 0.075 3.925 15 N -0.586 5.586 16 C 0.558 3.442 17 O -0.583 6.583 18 C 0.054 3.946 19 C -0.114 4.114 20 C -0.075 4.075 21 C 0.061 3.939 22 N -0.572 5.572 23 H 0.439 0.561 24 C 0.103 3.897 25 C -0.216 4.216 26 C 0.057 3.943 27 N -0.424 5.424 28 C 0.104 3.896 29 H 0.253 0.747 30 H 0.378 0.622 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.156 0.844 36 H 0.068 0.932 37 H 0.147 0.853 38 H 0.177 0.823 39 H 0.230 0.770 40 H 0.168 0.832 41 H 0.052 0.948 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.274 -32.862 3.993 35.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.262 4.262 3 Si 0.799 3.201 4 H -0.198 1.198 5 H -0.213 1.213 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.083 0.917 9 N -0.369 5.369 10 C 0.060 3.940 11 H 0.049 0.951 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.046 4.046 15 N -0.316 5.316 16 C 0.346 3.654 17 O -0.464 6.464 18 C -0.091 4.091 19 C -0.137 4.137 20 C -0.103 4.103 21 C -0.051 4.051 22 N -0.177 5.177 23 H 0.280 0.720 24 C -0.026 4.026 25 C -0.240 4.240 26 C -0.079 4.079 27 N -0.136 5.136 28 C -0.021 4.021 29 H 0.062 0.938 30 H 0.210 0.790 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.125 0.875 35 H 0.172 0.828 36 H 0.086 0.914 37 H 0.165 0.835 38 H 0.194 0.806 39 H 0.247 0.753 40 H 0.186 0.814 41 H 0.071 0.929 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.953 -32.203 3.950 34.576 hybrid contribution 0.852 1.596 0.468 1.869 sum 12.804 -30.607 4.418 33.470 Atomic orbital electron populations 1.69807 1.06357 1.26139 1.59190 1.25516 0.96448 1.00870 1.03359 0.85118 0.78008 0.79935 0.76992 1.19758 1.21336 1.21730 1.19567 0.91061 0.85414 1.41568 0.91692 1.42512 1.05511 1.00545 1.88300 1.20599 0.94583 0.86103 0.92714 0.95144 1.21746 0.98422 0.94497 1.00878 1.21910 1.00274 0.96785 0.96948 1.23175 0.98809 0.90734 0.91861 1.48157 1.18330 1.10793 1.54354 1.18483 0.81000 0.88074 0.77809 1.90732 1.59098 1.43751 1.52773 1.20615 0.93016 0.90954 1.04543 1.21747 0.94566 0.98755 0.98587 1.20719 1.00938 0.88443 1.00218 1.19327 0.96652 0.86555 1.02574 1.41738 1.14807 1.02624 1.58561 0.71956 1.22744 0.83039 1.00479 0.96315 1.21931 1.02176 0.86820 1.13105 1.20900 0.92615 0.91955 1.02447 1.66787 1.35475 0.98551 1.12752 1.22300 0.96694 0.82993 1.00127 0.93790 0.78985 0.91592 0.91908 0.92637 0.87543 0.82819 0.91367 0.83516 0.80579 0.75347 0.81400 0.92893 0.92259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.89 13.06 21.65 0.28 -60.61 16 2 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 3 Si 0.97 48.92 29.55 68.60 2.03 50.95 16 4 H -0.27 -13.31 7.11 99.48 0.71 -12.61 16 5 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.29 -14.50 7.11 99.48 0.71 -13.79 16 7 C -0.24 -14.63 9.93 84.03 0.83 -13.80 16 8 H 0.07 3.90 7.83 -2.91 -0.02 3.88 16 9 N -0.73 -39.52 5.13 -322.57 -1.65 -41.17 16 10 C 0.17 7.61 2.92 45.07 0.13 7.74 16 11 H 0.03 1.47 8.08 -2.39 -0.02 1.45 16 12 C -0.12 -4.11 5.36 30.62 0.16 -3.94 16 13 C -0.12 -3.35 6.08 30.67 0.19 -3.16 16 14 C 0.08 2.21 5.86 86.36 0.51 2.72 16 15 N -0.59 -21.93 2.97 -822.08 -2.44 -24.37 16 16 C 0.56 21.56 7.65 86.85 0.66 22.22 16 17 O -0.58 -26.64 15.77 -3.80 -0.06 -26.70 16 18 C 0.05 1.62 6.57 42.03 0.28 1.90 16 19 C -0.11 -2.76 9.60 22.62 0.22 -2.54 16 20 C -0.08 -1.18 10.18 22.49 0.23 -0.95 16 21 C 0.06 0.92 7.29 39.25 0.29 1.21 16 22 N -0.57 -3.30 6.05 -187.40 -1.13 -4.44 16 23 H 0.44 -0.67 8.96 -92.71 -0.83 -1.51 16 24 C 0.10 0.44 11.81 83.03 0.98 1.42 16 25 C -0.22 -2.62 11.08 23.54 0.26 -2.35 16 26 C 0.06 1.16 7.52 41.93 0.32 1.47 16 27 N -0.42 -11.26 6.17 -174.25 -1.07 -12.33 16 28 C 0.10 4.59 6.03 86.36 0.52 5.11 16 29 H 0.25 15.37 8.31 -92.71 -0.77 14.59 16 30 H 0.38 21.34 7.80 -92.71 -0.72 20.62 16 31 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 34 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 35 H 0.16 4.24 4.05 -65.41 -0.26 3.98 16 36 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.15 3.60 7.65 -2.91 -0.02 3.57 16 38 H 0.18 1.31 8.06 -2.91 -0.02 1.28 16 39 H 0.23 -1.31 8.06 -2.91 -0.02 -1.33 16 40 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.05 2.69 7.00 -2.39 -0.02 2.68 16 42 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -82.94 346.08 1.25 -81.70 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: -0.74 Total: 23.67 kcal Atomic # 6 Polarization: 7.28 SS G_CDS: 6.04 Total: 13.31 kcal Atomic # 7 Polarization: -136.90 SS G_CDS: -6.02 Total: -142.92 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.06 Total: -26.70 kcal Atomic # 14 Polarization: 48.92 SS G_CDS: 2.03 Total: 50.95 kcal Total: -82.94 1.25 -81.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999680543.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.769 kcal (2) G-P(sol) polarization free energy of solvation -82.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds