Wall clock time and date at job start Fri Apr 10 2020 23:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86796 * 120.00030 * 2 1 4 4 H 1.48507 * 109.46605 * 270.26826 * 3 2 1 5 5 H 1.48495 * 109.47438 * 30.26936 * 3 2 1 6 6 H 1.48504 * 109.47116 * 150.27655 * 3 2 1 7 7 C 1.38814 * 119.99681 * 180.26973 * 2 1 3 8 8 H 1.07995 * 119.99888 * 179.73111 * 7 2 1 9 9 N 1.36937 * 120.00036 * 359.72684 * 7 2 1 10 10 C 1.46503 * 119.99797 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.50046 * 34.94218 * 10 9 7 12 12 C 1.53051 * 109.49640 * 155.00114 * 10 9 7 13 13 C 1.53042 * 109.53628 * 181.31827 * 12 10 9 14 14 C 1.53193 * 109.31126 * 298.63533 * 13 12 10 15 15 N 1.46924 * 108.77767 * 54.63406 * 14 13 12 16 16 C 1.34780 * 120.63031 * 126.41177 * 15 14 13 17 17 O 1.21526 * 120.00459 * 179.86083 * 16 15 14 18 18 C 1.48058 * 119.99684 * 359.86552 * 16 15 14 19 19 C 1.39774 * 119.46819 * 202.08890 * 18 16 15 20 20 C 1.38140 * 119.57003 * 179.72549 * 19 18 16 21 21 C 1.39250 * 118.37752 * 0.52942 * 20 19 18 22 22 N 1.37354 * 133.60626 * 179.70407 * 21 20 19 23 23 H 0.97000 * 125.05214 * 0.02562 * 22 21 20 24 24 C 1.36716 * 109.89433 * 180.02562 * 22 21 20 25 25 C 1.34292 * 110.02076 * 359.97438 * 24 22 21 26 26 C 1.41185 * 119.10530 * 359.72921 * 21 20 19 27 27 N 1.32444 * 119.47600 * 22.35368 * 18 16 15 28 28 C 1.46927 * 118.73844 * 306.39372 * 15 14 13 29 29 H 0.96995 * 119.99527 * 359.73194 * 1 2 3 30 30 H 0.96997 * 120.00381 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.45689 * 301.33740 * 12 10 9 32 32 H 1.08995 * 109.45809 * 61.30960 * 12 10 9 33 33 H 1.08994 * 109.50064 * 58.58651 * 13 12 10 34 34 H 1.08997 * 109.49475 * 178.68235 * 13 12 10 35 35 H 1.09001 * 109.58755 * 174.42503 * 14 13 12 36 36 H 1.09004 * 109.58627 * 294.84599 * 14 13 12 37 37 H 1.07994 * 120.21292 * 359.97328 * 19 18 16 38 38 H 1.08001 * 120.80658 * 180.26206 * 20 19 18 39 39 H 1.07995 * 124.99113 * 180.02562 * 24 22 21 40 40 H 1.08005 * 126.47623 * 179.97438 * 25 24 22 41 41 H 1.08994 * 109.58790 * 293.81586 * 28 15 14 42 42 H 1.09008 * 109.57836 * 173.39508 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4920 2.0496 -1.4002 5 1 1.4506 2.6510 0.7057 6 1 3.5508 1.4384 0.6942 7 6 2.0103 -1.2022 -0.0057 8 1 3.0902 -1.2022 -0.0100 9 7 1.3255 -2.3881 -0.0056 10 6 2.0580 -3.6568 -0.0121 11 1 2.9720 -3.5523 0.5725 12 6 1.1838 -4.7545 0.5987 13 6 1.9601 -6.0732 0.6225 14 6 2.3137 -6.4788 -0.8119 15 7 3.0298 -5.3684 -1.4545 16 6 4.2299 -5.5692 -2.0340 17 8 4.8112 -4.6431 -2.5645 18 6 4.8402 -6.9182 -2.0245 19 6 6.2222 -7.0488 -2.1879 20 6 6.7944 -8.3060 -2.1737 21 6 5.9625 -9.4101 -2.0062 22 7 6.1852 -10.7643 -1.9503 23 1 7.0534 -11.1898 -2.0284 24 6 5.0012 -11.4233 -1.7682 25 6 3.9902 -10.5420 -1.7002 26 6 4.5739 -9.2065 -1.8521 27 7 4.0672 -7.9820 -1.8665 28 6 2.4126 -4.0351 -1.4536 29 1 -0.4849 0.8400 0.0039 30 1 0.3556 -2.3881 -0.0020 31 1 0.9096 -4.4762 1.6163 32 1 0.2813 -4.8754 -0.0003 33 1 2.8753 -5.9463 1.2007 34 1 1.3455 -6.8490 1.0789 35 1 2.9505 -7.3633 -0.7951 36 1 1.4003 -6.6941 -1.3664 37 1 6.8390 -6.1724 -2.3205 38 1 7.8606 -8.4299 -2.2939 39 1 4.8948 -12.4951 -1.6896 40 1 2.9446 -10.7740 -1.5610 41 1 1.5074 -4.0511 -2.0604 42 1 3.1148 -3.3072 -1.8602 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999680548.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:29 Heat of formation + Delta-G solvation = 67.069202 kcal Electronic energy + Delta-G solvation = -25700.279985 eV Core-core repulsion = 22067.758401 eV Total energy + Delta-G solvation = -3632.521584 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.91433 -39.93847 -37.88775 -37.00272 -34.40521 -33.18739 -32.13449 -31.06345 -30.43525 -29.75958 -28.06284 -25.68635 -23.96781 -23.89800 -22.85790 -21.70652 -21.29552 -20.31224 -19.04195 -18.66645 -17.11820 -17.03010 -16.98140 -15.78907 -15.48646 -15.04783 -14.83517 -14.44050 -14.32733 -14.13787 -13.67830 -13.54425 -13.39841 -13.33815 -13.07428 -12.90540 -12.70713 -12.42522 -12.20473 -12.00305 -11.22425 -10.93197 -10.75442 -10.72237 -10.52775 -10.45335 -10.13817 -9.96455 -9.72178 -9.63613 -9.03917 -8.93662 -8.73936 -8.44092 -8.15908 -6.91871 -5.71973 -3.01198 0.58365 0.81654 2.24991 2.58399 2.90679 3.26901 3.50019 3.55005 3.56791 3.69768 3.92834 4.30359 4.54088 4.61251 4.65254 4.73415 4.91774 5.20196 5.30539 5.38748 5.39082 5.50541 5.56011 5.60133 5.74728 5.82371 5.94897 5.99212 6.03043 6.10064 6.23420 6.29427 6.32498 6.40291 6.49801 6.60185 6.65826 6.92737 6.94393 6.95971 7.15100 7.58568 7.78482 7.82755 8.44712 8.48332 9.58114 10.13158 10.48797 11.50496 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.026761 B = 0.002997 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.054931 B = 9339.695148 C =10119.541407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.131 4.131 14 C 0.078 3.922 15 N -0.582 5.582 16 C 0.566 3.434 17 O -0.539 6.539 18 C 0.084 3.916 19 C -0.097 4.097 20 C -0.091 4.091 21 C 0.061 3.939 22 N -0.590 5.590 23 H 0.419 0.581 24 C 0.065 3.935 25 C -0.183 4.183 26 C 0.082 3.918 27 N -0.408 5.408 28 C 0.090 3.910 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.135 0.865 36 H 0.063 0.937 37 H 0.152 0.848 38 H 0.138 0.862 39 H 0.180 0.820 40 H 0.158 0.842 41 H 0.063 0.937 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.600 -28.095 -2.489 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.170 4.170 14 C -0.045 4.045 15 N -0.313 5.313 16 C 0.351 3.649 17 O -0.416 6.416 18 C -0.063 4.063 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.049 4.049 22 N -0.194 5.194 23 H 0.256 0.744 24 C -0.062 4.062 25 C -0.209 4.209 26 C -0.053 4.053 27 N -0.120 5.120 28 C -0.034 4.034 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.151 0.849 36 H 0.081 0.919 37 H 0.170 0.830 38 H 0.156 0.844 39 H 0.197 0.803 40 H 0.175 0.825 41 H 0.081 0.919 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 11.167 -27.405 -2.652 29.711 hybrid contribution 1.288 0.581 -0.169 1.423 sum 12.455 -26.823 -2.821 29.708 Atomic orbital electron populations 1.69669 1.05103 1.25662 1.57719 1.24745 0.95516 0.97712 1.02861 0.86184 0.78678 0.83751 0.77590 1.21635 1.21831 1.20702 1.19287 0.91114 0.84010 1.42656 0.91039 1.42389 1.05814 0.99607 1.88081 1.20485 0.94944 0.86418 0.92340 0.93186 1.21842 0.98746 0.94386 1.01508 1.21925 1.00403 0.97774 0.96871 1.22790 0.98391 0.91170 0.92129 1.48126 1.18102 1.11366 1.53711 1.17833 0.81311 0.86256 0.79469 1.90789 1.62219 1.42508 1.46103 1.21136 0.91216 0.92407 1.01560 1.21747 0.94801 0.97756 0.97635 1.20436 0.99515 0.89638 1.02428 1.19243 0.96730 0.85038 1.03887 1.41617 1.09621 1.04220 1.63954 0.74383 1.21959 0.83781 0.98422 1.02058 1.21612 0.99650 0.88071 1.11520 1.20230 0.89599 0.92118 1.03333 1.67055 1.37682 0.97321 1.09972 1.22834 0.97869 0.81589 1.01116 0.93531 0.78082 0.91699 0.92118 0.92153 0.91297 0.84884 0.91859 0.83003 0.84370 0.80339 0.82452 0.91862 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.68 13.06 55.49 0.72 -27.95 16 2 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 3 Si 0.91 23.15 29.55 -169.99 -5.02 18.12 16 4 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 7 C -0.24 -6.87 9.93 -15.06 -0.15 -7.02 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.72 -18.55 5.12 -53.31 -0.27 -18.82 16 10 C 0.17 3.58 2.92 -67.81 -0.20 3.38 16 11 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 12 C -0.13 -2.19 5.36 -26.68 -0.14 -2.33 16 13 C -0.13 -1.87 6.08 -26.61 -0.16 -2.03 16 14 C 0.08 1.14 5.98 -3.71 -0.02 1.12 16 15 N -0.58 -10.33 2.97 -173.80 -0.52 -10.85 16 16 C 0.57 10.25 7.61 -12.23 -0.09 10.15 16 17 O -0.54 -11.38 15.92 5.34 0.09 -11.30 16 18 C 0.08 1.23 6.45 -83.00 -0.53 0.70 16 19 C -0.10 -1.17 9.59 -39.04 -0.37 -1.55 16 20 C -0.09 -0.83 10.18 -39.24 -0.40 -1.23 16 21 C 0.06 0.57 7.29 -83.90 -0.61 -0.05 16 22 N -0.59 -3.25 6.05 -10.58 -0.06 -3.31 16 23 H 0.42 0.92 8.96 -40.82 -0.37 0.55 16 24 C 0.07 0.33 11.81 -16.77 -0.20 0.13 16 25 C -0.18 -1.45 11.08 -37.63 -0.42 -1.87 16 26 C 0.08 0.92 7.52 -83.10 -0.62 0.30 16 27 N -0.41 -5.55 6.41 -6.43 -0.04 -5.59 16 28 C 0.09 1.85 6.02 -3.71 -0.02 1.83 16 29 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 30 H 0.39 10.42 7.80 -40.82 -0.32 10.11 16 31 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.13 1.87 4.00 -78.57 -0.31 1.55 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.15 1.74 7.78 -52.49 -0.41 1.33 16 38 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.18 0.17 8.06 -52.49 -0.42 -0.26 16 40 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.09 2.11 7.00 -51.92 -0.36 1.74 16 LS Contribution 346.50 15.07 5.22 5.22 Total: -1.00 -35.47 346.50 -9.47 -44.94 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -5.54 Total: 8.45 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: -4.05 Total: 1.09 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -0.17 Total: -66.52 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.30 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -35.47 -9.47 -44.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999680548.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.009 kcal (2) G-P(sol) polarization free energy of solvation -35.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds