Wall clock time and date at job start Fri Apr 10 2020 23:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00239 * 2 1 4 4 H 1.48501 * 109.47297 * 270.00206 * 3 2 1 5 5 H 1.48499 * 109.46877 * 30.00164 * 3 2 1 6 6 H 1.48503 * 109.47072 * 149.99974 * 3 2 1 7 7 C 1.38814 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00069 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99896 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49499 * 324.93303 * 10 9 7 12 12 C 1.53042 * 109.51867 * 204.85936 * 10 9 7 13 13 C 1.53046 * 109.53334 * 178.67016 * 12 10 9 14 14 C 1.52758 * 109.38476 * 61.23667 * 13 12 10 15 15 N 1.46922 * 109.00911 * 305.58567 * 14 13 12 16 16 C 1.34775 * 120.63361 * 233.58444 * 15 14 13 17 17 O 1.21654 * 120.00108 * 183.84975 * 16 15 14 18 18 C 1.47048 * 120.00196 * 3.84772 * 16 15 14 19 19 C 1.37599 * 119.93194 * 122.41266 * 18 16 15 20 20 C 1.39943 * 120.01573 * 179.75476 * 19 18 16 21 21 C 1.36210 * 119.91610 * 0.50783 * 20 19 18 22 22 C 1.40923 * 119.80097 * 359.47157 * 21 20 19 23 23 N 1.32575 * 132.18736 * 180.28020 * 22 21 20 24 24 C 1.33236 * 109.13694 * 180.02562 * 23 22 21 25 25 C 1.35450 * 108.57956 * 359.97438 * 24 23 22 26 26 N 1.36251 * 107.17813 * 0.02562 * 25 24 23 27 27 C 1.46928 * 118.73571 * 53.31098 * 15 14 13 28 28 H 0.97007 * 120.00113 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00070 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.45755 * 298.68429 * 12 10 9 31 31 H 1.08999 * 109.46483 * 58.65092 * 12 10 9 32 32 H 1.09001 * 109.49845 * 181.31609 * 13 12 10 33 33 H 1.09005 * 109.49312 * 301.37879 * 13 12 10 34 34 H 1.09006 * 109.51082 * 185.70805 * 14 13 12 35 35 H 1.09002 * 109.43343 * 65.42831 * 14 13 12 36 36 H 1.08002 * 119.99520 * 0.02701 * 19 18 16 37 37 H 1.07994 * 120.04110 * 180.25582 * 20 19 18 38 38 H 1.08002 * 120.09877 * 179.74821 * 21 20 19 39 39 H 1.08002 * 125.70988 * 179.97438 * 24 23 22 40 40 H 1.08000 * 126.40882 * 180.02562 * 25 24 23 41 41 H 1.09003 * 109.58555 * 66.43299 * 27 15 14 42 42 H 1.09006 * 109.58363 * 186.84977 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9681 -3.5514 -0.5909 12 6 1.1801 -4.7541 -0.6069 13 6 1.9569 -6.0724 -0.6375 14 6 2.3229 -6.4785 0.7889 15 7 3.0403 -5.3698 1.4329 16 6 4.2448 -5.5706 2.0034 17 8 4.7970 -4.6618 2.5943 18 6 4.8915 -6.8880 1.9115 19 6 6.1423 -7.0012 1.3495 20 6 6.7616 -8.2534 1.2658 21 6 6.1201 -9.3609 1.7320 22 6 4.8394 -9.2385 2.3070 23 7 4.0105 -10.1298 2.8324 24 6 2.9065 -9.5090 3.2460 25 6 3.0297 -8.1866 2.9802 26 7 4.2438 -8.0064 2.3885 27 6 2.4225 -4.0368 1.4380 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 0.2817 -4.8760 -0.0020 31 1 0.8990 -4.4746 -1.6223 32 1 1.3397 -6.8480 -1.0909 33 1 2.8679 -5.9443 -1.2223 34 1 2.9618 -7.3613 0.7635 35 1 1.4134 -6.6990 1.3478 36 1 6.6483 -6.1228 0.9767 37 1 7.7450 -8.3421 0.8285 38 1 6.5936 -10.3293 1.6652 39 1 2.0558 -9.9812 3.7148 40 1 2.3018 -7.4186 3.1967 41 1 1.5213 -4.0540 2.0510 42 1 3.1270 -3.3091 1.8408 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999684113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:32 Heat of formation + Delta-G solvation = 81.440558 kcal Electronic energy + Delta-G solvation = -26308.613263 eV Core-core repulsion = 22676.714867 eV Total energy + Delta-G solvation = -3631.898395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.18934 -40.14091 -37.86607 -37.05867 -34.80898 -33.85734 -32.38971 -31.33359 -30.59282 -29.16822 -28.45636 -25.98308 -24.35551 -23.90179 -22.94004 -22.33201 -22.05356 -20.47951 -19.14920 -18.38483 -17.49222 -17.17250 -16.71957 -16.41967 -15.82668 -15.63759 -15.13486 -14.62229 -14.44571 -14.28850 -14.16536 -13.81031 -13.63091 -13.50838 -12.88673 -12.71871 -12.66109 -12.46641 -12.33134 -12.01126 -11.56723 -11.32477 -11.07868 -10.91636 -10.75569 -10.71225 -10.58270 -10.28900 -10.05083 -9.94902 -9.73947 -9.21111 -9.10534 -8.59203 -8.13083 -7.09919 -5.86165 -3.16807 0.18439 0.99105 1.94476 2.45989 2.64476 2.94340 3.25114 3.39876 3.45857 3.47580 3.90921 4.03614 4.28103 4.50506 4.55944 4.70174 4.73729 4.93472 5.08247 5.09971 5.15135 5.26712 5.36056 5.38761 5.44064 5.52751 5.66636 5.69231 5.75620 5.79485 5.87629 6.02747 6.06702 6.10155 6.20504 6.31864 6.34132 6.49247 6.67033 6.69577 6.84163 7.28313 7.58223 7.63736 7.92230 8.31439 9.43660 9.96086 10.31397 11.35819 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.003394 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.352218 B = 8247.739961 C = 8780.790797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.008 4.008 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.716 5.716 10 C 0.169 3.831 11 H 0.052 0.948 12 C -0.126 4.126 13 C -0.129 4.129 14 C 0.102 3.898 15 N -0.590 5.590 16 C 0.556 3.444 17 O -0.515 6.515 18 C 0.049 3.951 19 C -0.083 4.083 20 C -0.107 4.107 21 C -0.063 4.063 22 C 0.213 3.787 23 N -0.488 5.488 24 C 0.036 3.964 25 C -0.093 4.093 26 N -0.345 5.345 27 C 0.090 3.910 28 H 0.257 0.743 29 H 0.386 0.614 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.158 0.842 37 H 0.150 0.850 38 H 0.154 0.846 39 H 0.184 0.816 40 H 0.181 0.819 41 H 0.067 0.933 42 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.070 -20.650 1.316 22.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.378 4.378 8 H 0.090 0.910 9 N -0.357 5.357 10 C 0.058 3.942 11 H 0.070 0.930 12 C -0.165 4.165 13 C -0.168 4.168 14 C -0.021 4.021 15 N -0.323 5.323 16 C 0.340 3.660 17 O -0.390 6.390 18 C -0.057 4.057 19 C -0.105 4.105 20 C -0.130 4.130 21 C -0.083 4.083 22 C -0.029 4.029 23 N -0.208 5.208 24 C -0.117 4.117 25 C -0.226 4.226 26 N -0.019 5.019 27 C -0.033 4.033 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.093 0.907 36 H 0.175 0.825 37 H 0.168 0.832 38 H 0.172 0.828 39 H 0.201 0.799 40 H 0.199 0.801 41 H 0.086 0.914 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.535 -20.741 1.711 22.494 hybrid contribution -0.195 1.790 0.039 1.801 sum 8.339 -18.952 1.750 20.779 Atomic orbital electron populations 1.69657 1.05156 1.25912 1.57079 1.24755 0.95516 0.97810 1.02369 0.86189 0.78831 0.83609 0.77588 1.21593 1.21662 1.20557 1.19258 0.91098 0.83920 1.43546 0.91015 1.42371 1.05839 0.99488 1.87982 1.20476 0.95067 0.86615 0.92066 0.93010 1.21838 0.98675 0.93834 1.02110 1.21807 1.01084 0.98480 0.95417 1.21916 0.96985 0.88664 0.94512 1.48375 1.17643 1.11911 1.54382 1.17686 0.81648 0.86299 0.80355 1.90902 1.63425 1.42943 1.41739 1.20508 0.95180 0.86083 1.03881 1.21214 0.91530 0.99808 0.97932 1.20985 1.00935 0.90963 1.00133 1.20405 0.90123 1.00774 0.96988 1.21019 0.96830 0.80132 1.04932 1.70681 1.02909 1.29895 1.17274 1.22548 0.97513 0.90046 1.01575 1.22798 0.89398 1.00489 1.09885 1.42937 1.13944 1.07494 1.37523 1.23000 0.98014 0.80607 1.01717 0.93358 0.77967 0.91862 0.91106 0.90712 0.91546 0.90694 0.90681 0.82457 0.83209 0.82826 0.79929 0.80146 0.91435 0.88804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.37 13.06 55.49 0.72 -26.65 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.25 -6.70 9.93 -15.06 -0.15 -6.85 16 8 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 9 N -0.72 -17.12 5.13 -53.31 -0.27 -17.39 16 10 C 0.17 3.18 2.92 -67.81 -0.20 2.98 16 11 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 12 C -0.13 -1.87 5.36 -26.69 -0.14 -2.01 16 13 C -0.13 -1.51 6.06 -26.83 -0.16 -1.67 16 14 C 0.10 1.18 4.44 -3.94 -0.02 1.17 16 15 N -0.59 -8.62 2.98 -174.44 -0.52 -9.14 16 16 C 0.56 8.63 6.88 -12.69 -0.09 8.55 16 17 O -0.52 -9.94 16.52 5.23 0.09 -9.85 16 18 C 0.05 0.63 5.34 -81.86 -0.44 0.19 16 19 C -0.08 -0.85 9.73 -39.18 -0.38 -1.23 16 20 C -0.11 -0.82 10.04 -39.67 -0.40 -1.22 16 21 C -0.06 -0.56 10.09 -39.30 -0.40 -0.95 16 22 C 0.21 2.53 7.80 -156.02 -1.22 1.31 16 23 N -0.49 -6.15 11.31 -12.76 -0.14 -6.29 16 24 C 0.04 0.38 11.83 -17.94 -0.21 0.17 16 25 C -0.09 -1.03 9.00 -16.58 -0.15 -1.18 16 26 N -0.35 -4.20 2.16 -58.75 -0.13 -4.33 16 27 C 0.09 1.61 6.01 -3.71 -0.02 1.59 16 28 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 29 H 0.39 9.74 7.80 -40.82 -0.32 9.42 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.84 4.86 -51.93 -0.25 0.59 16 35 H 0.07 0.78 7.60 -51.93 -0.39 0.38 16 36 H 0.16 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 39 H 0.18 1.34 8.06 -52.49 -0.42 0.91 16 40 H 0.18 1.81 7.12 -52.49 -0.37 1.44 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.96 7.03 -51.93 -0.36 1.60 16 LS Contribution 344.51 15.07 5.19 5.19 Total: -1.00 -33.03 344.51 -9.63 -42.65 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -5.47 Total: 8.14 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -4.07 Total: 0.52 kcal Atomic # 7 Polarization: -63.46 SS G_CDS: -0.34 Total: -63.80 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.09 Total: -9.85 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.03 -9.63 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999684113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.095 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds