Wall clock time and date at job start Fri Apr 10 2020 23:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86805 * 120.00239 * 2 1 4 4 H 1.48501 * 109.47297 * 270.00206 * 3 2 1 5 5 H 1.48499 * 109.46877 * 30.00164 * 3 2 1 6 6 H 1.48503 * 109.47072 * 149.99974 * 3 2 1 7 7 C 1.38814 * 119.99748 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00069 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00108 * 359.97438 * 7 2 1 10 10 C 1.46504 * 119.99896 * 180.02562 * 9 7 2 11 11 H 1.09000 * 109.49499 * 324.93303 * 10 9 7 12 12 C 1.53042 * 109.51867 * 204.85936 * 10 9 7 13 13 C 1.53046 * 109.53334 * 178.67016 * 12 10 9 14 14 C 1.52758 * 109.38476 * 61.23667 * 13 12 10 15 15 N 1.46922 * 109.00911 * 305.58567 * 14 13 12 16 16 C 1.34775 * 120.63361 * 233.58444 * 15 14 13 17 17 O 1.21654 * 120.00108 * 183.84975 * 16 15 14 18 18 C 1.47048 * 120.00196 * 3.84772 * 16 15 14 19 19 C 1.37599 * 119.93194 * 122.41266 * 18 16 15 20 20 C 1.39943 * 120.01573 * 179.75476 * 19 18 16 21 21 C 1.36210 * 119.91610 * 0.50783 * 20 19 18 22 22 C 1.40923 * 119.80097 * 359.47157 * 21 20 19 23 23 N 1.32575 * 132.18736 * 180.28020 * 22 21 20 24 24 C 1.33236 * 109.13694 * 180.02562 * 23 22 21 25 25 C 1.35450 * 108.57956 * 359.97438 * 24 23 22 26 26 N 1.36251 * 107.17813 * 0.02562 * 25 24 23 27 27 C 1.46928 * 118.73571 * 53.31098 * 15 14 13 28 28 H 0.97007 * 120.00113 * 359.97438 * 1 2 3 29 29 H 0.96995 * 120.00070 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.45755 * 298.68429 * 12 10 9 31 31 H 1.08999 * 109.46483 * 58.65092 * 12 10 9 32 32 H 1.09001 * 109.49845 * 181.31609 * 13 12 10 33 33 H 1.09005 * 109.49312 * 301.37879 * 13 12 10 34 34 H 1.09006 * 109.51082 * 185.70805 * 14 13 12 35 35 H 1.09002 * 109.43343 * 65.42831 * 14 13 12 36 36 H 1.08002 * 119.99520 * 0.02701 * 19 18 16 37 37 H 1.07994 * 120.04110 * 180.25582 * 20 19 18 38 38 H 1.08002 * 120.09877 * 179.74821 * 21 20 19 39 39 H 1.08002 * 125.70988 * 179.97438 * 24 23 22 40 40 H 1.08000 * 126.40882 * 180.02562 * 25 24 23 41 41 H 1.09003 * 109.58555 * 66.43299 * 27 15 14 42 42 H 1.09006 * 109.58363 * 186.84977 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7001 7 6 2.0101 -1.2022 -0.0005 8 1 3.0902 -1.2023 -0.0010 9 7 1.3254 -2.3881 -0.0005 10 6 2.0579 -3.6568 -0.0005 11 1 2.9681 -3.5514 -0.5909 12 6 1.1801 -4.7541 -0.6069 13 6 1.9569 -6.0724 -0.6375 14 6 2.3229 -6.4785 0.7889 15 7 3.0403 -5.3698 1.4329 16 6 4.2448 -5.5706 2.0034 17 8 4.7970 -4.6618 2.5943 18 6 4.8915 -6.8880 1.9115 19 6 6.1423 -7.0012 1.3495 20 6 6.7616 -8.2534 1.2658 21 6 6.1201 -9.3609 1.7320 22 6 4.8394 -9.2385 2.3070 23 7 4.0105 -10.1298 2.8324 24 6 2.9065 -9.5090 3.2460 25 6 3.0297 -8.1866 2.9802 26 7 4.2438 -8.0064 2.3885 27 6 2.4225 -4.0368 1.4380 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 -0.0005 30 1 0.2817 -4.8760 -0.0020 31 1 0.8990 -4.4746 -1.6223 32 1 1.3397 -6.8480 -1.0909 33 1 2.8679 -5.9443 -1.2223 34 1 2.9618 -7.3613 0.7635 35 1 1.4134 -6.6990 1.3478 36 1 6.6483 -6.1228 0.9767 37 1 7.7450 -8.3421 0.8285 38 1 6.5936 -10.3293 1.6652 39 1 2.0558 -9.9812 3.7148 40 1 2.3018 -7.4186 3.1967 41 1 1.5213 -4.0540 2.0510 42 1 3.1270 -3.3091 1.8408 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999684113.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:31 Heat of formation + Delta-G solvation = 60.833798 kcal Electronic energy + Delta-G solvation = -26309.506839 eV Core-core repulsion = 22676.714867 eV Total energy + Delta-G solvation = -3632.791971 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -44.01680 -41.35213 -39.06357 -38.01580 -36.39112 -34.88461 -33.82777 -32.89424 -31.45980 -30.16906 -29.91302 -27.13464 -25.97098 -25.08833 -23.72793 -23.47306 -23.17391 -21.78958 -20.31042 -19.38422 -19.16053 -18.36499 -17.72136 -17.31905 -17.05763 -16.57023 -16.40290 -16.14669 -15.64963 -15.52276 -15.27110 -15.14673 -15.11369 -14.54242 -14.16159 -14.05129 -13.82899 -13.39768 -13.17583 -13.14623 -12.92781 -12.83644 -12.60205 -12.27612 -12.22176 -12.00411 -11.93293 -11.78905 -11.55555 -11.42611 -11.16067 -11.04622 -10.03661 -9.87470 -9.07940 -8.93909 -8.00684 -5.30383 -0.62762 0.23184 0.93948 1.43371 1.45405 1.49129 1.54226 1.66276 1.94951 2.45674 2.51662 2.95773 3.26986 3.32835 3.49610 3.61363 3.84856 3.90098 3.91569 4.01693 4.05623 4.20582 4.25668 4.32672 4.43108 4.45894 4.53893 4.59375 4.74816 4.76308 4.82316 4.92622 4.97884 5.03183 5.08917 5.23914 5.32522 5.37144 5.39765 5.48158 5.59095 5.86036 6.08283 6.21429 6.70981 6.77086 7.28877 7.99621 8.24855 9.21798 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.022995 B = 0.003394 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.352218 B = 8247.739961 C = 8780.790797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.065 4.065 3 Si 0.967 3.033 4 H -0.284 1.284 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.728 5.728 10 C 0.169 3.831 11 H 0.037 0.963 12 C -0.117 4.117 13 C -0.119 4.119 14 C 0.104 3.896 15 N -0.586 5.586 16 C 0.557 3.443 17 O -0.565 6.565 18 C 0.017 3.983 19 C -0.069 4.069 20 C -0.095 4.095 21 C -0.058 4.058 22 C 0.195 3.805 23 N -0.512 5.512 24 C 0.037 3.963 25 C -0.108 4.108 26 N -0.348 5.348 27 C 0.106 3.894 28 H 0.253 0.747 29 H 0.378 0.622 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.166 0.834 37 H 0.193 0.807 38 H 0.182 0.818 39 H 0.210 0.790 40 H 0.185 0.815 41 H 0.066 0.934 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.352 -23.170 0.591 24.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.258 4.258 3 Si 0.796 3.204 4 H -0.210 1.210 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.379 4.379 8 H 0.086 0.914 9 N -0.368 5.368 10 C 0.059 3.941 11 H 0.055 0.945 12 C -0.155 4.155 13 C -0.158 4.158 14 C -0.018 4.018 15 N -0.318 5.318 16 C 0.344 3.656 17 O -0.443 6.443 18 C -0.088 4.088 19 C -0.091 4.091 20 C -0.118 4.118 21 C -0.078 4.078 22 C -0.046 4.046 23 N -0.233 5.233 24 C -0.115 4.115 25 C -0.241 4.241 26 N -0.022 5.022 27 C -0.019 4.019 28 H 0.062 0.938 29 H 0.211 0.789 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.127 0.873 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.111 0.889 36 H 0.183 0.817 37 H 0.210 0.790 38 H 0.200 0.800 39 H 0.227 0.773 40 H 0.202 0.798 41 H 0.085 0.915 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.835 -23.327 0.970 25.334 hybrid contribution -0.510 2.450 0.268 2.517 sum 9.325 -20.877 1.237 22.898 Atomic orbital electron populations 1.69784 1.06357 1.26227 1.58895 1.25474 0.96344 1.00792 1.03224 0.85243 0.77680 0.79881 0.77588 1.21035 1.21903 1.20085 1.19523 0.91138 0.85342 1.41902 0.91414 1.42495 1.05572 1.00495 1.88197 1.20623 0.94872 0.86098 0.92508 0.94539 1.21729 0.98458 0.93923 1.01406 1.21777 1.01091 0.97344 0.95562 1.22120 0.97524 0.87704 0.94429 1.48321 1.17749 1.11304 1.54397 1.18103 0.81256 0.87106 0.79183 1.90865 1.64625 1.45023 1.43805 1.20146 0.96380 0.84818 1.07473 1.21596 0.90282 1.01437 0.95781 1.21388 1.02153 0.89130 0.99104 1.20892 0.88925 1.02473 0.95536 1.21594 0.97891 0.79832 1.05321 1.70690 1.03779 1.30530 1.18298 1.23013 0.97775 0.89867 1.00883 1.22999 0.89559 1.00949 1.10546 1.42953 1.14224 1.07346 1.37653 1.22432 0.97057 0.81856 1.00526 0.93802 0.78907 0.91189 0.91556 0.87342 0.91686 0.89555 0.88920 0.81696 0.79002 0.80046 0.77319 0.79810 0.91522 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.85 13.06 21.65 0.28 -57.57 16 2 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 3 Si 0.97 46.36 29.55 68.60 2.03 48.38 16 4 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 7 C -0.25 -13.73 9.93 84.03 0.83 -12.89 16 8 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 9 N -0.73 -35.73 5.13 -322.57 -1.65 -37.38 16 10 C 0.17 6.45 2.92 45.07 0.13 6.58 16 11 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 12 C -0.12 -3.35 5.36 30.62 0.16 -3.18 16 13 C -0.12 -2.49 6.06 30.53 0.19 -2.31 16 14 C 0.10 2.21 4.44 86.22 0.38 2.60 16 15 N -0.59 -17.12 2.98 -824.04 -2.45 -19.57 16 16 C 0.56 17.52 6.88 86.55 0.60 18.12 16 17 O -0.56 -22.72 16.52 -4.20 -0.07 -22.79 16 18 C 0.02 0.42 5.34 40.37 0.22 0.64 16 19 C -0.07 -1.26 9.73 22.53 0.22 -1.04 16 20 C -0.09 -1.09 10.04 22.21 0.22 -0.87 16 21 C -0.06 -0.83 10.09 22.45 0.23 -0.61 16 22 C 0.20 4.22 7.80 134.09 1.05 5.26 16 23 N -0.51 -11.92 11.31 -194.28 -2.20 -14.12 16 24 C 0.04 0.72 11.83 83.84 0.99 1.71 16 25 C -0.11 -2.27 9.00 83.36 0.75 -1.52 16 26 N -0.35 -7.96 2.16 -339.78 -0.73 -8.69 16 27 C 0.11 3.91 6.01 86.36 0.52 4.43 16 28 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 29 H 0.38 19.58 7.80 -92.71 -0.72 18.86 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.09 1.75 4.86 -2.38 -0.01 1.74 16 35 H 0.09 1.70 7.60 -2.39 -0.02 1.68 16 36 H 0.17 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.19 0.60 8.06 -2.91 -0.02 0.58 16 38 H 0.18 1.52 8.06 -2.91 -0.02 1.49 16 39 H 0.21 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.18 3.54 7.12 -2.91 -0.02 3.52 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.06 2.51 7.03 -2.38 -0.02 2.49 16 Total: -1.00 -74.49 344.51 2.48 -72.01 By element: Atomic # 1 Polarization: 25.75 SS G_CDS: 0.33 Total: 26.08 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 6.95 Total: 13.65 kcal Atomic # 7 Polarization: -130.58 SS G_CDS: -6.75 Total: -137.34 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: -0.07 Total: -22.79 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.38 kcal Total: -74.49 2.48 -72.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999684113.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.841 kcal (2) G-P(sol) polarization free energy of solvation -74.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.007 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds