Wall clock time and date at job start Fri Apr 10 2020 23:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99746 * 2 1 4 4 H 1.48504 * 109.47279 * 270.27814 * 3 2 1 5 5 H 1.48501 * 109.47100 * 30.27797 * 3 2 1 6 6 H 1.48496 * 109.46994 * 150.27439 * 3 2 1 7 7 C 1.38806 * 120.00632 * 180.27590 * 2 1 3 8 8 H 1.08005 * 119.99234 * 359.72195 * 7 2 1 9 9 N 1.36930 * 120.00413 * 179.72519 * 7 2 1 10 10 C 1.46500 * 120.00103 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.49812 * 34.93245 * 10 9 7 12 12 C 1.53042 * 109.50033 * 155.00104 * 10 9 7 13 13 C 1.53038 * 109.53831 * 181.31527 * 12 10 9 14 14 C 1.53191 * 109.31502 * 298.63495 * 13 12 10 15 15 N 1.46927 * 108.77789 * 54.63328 * 14 13 12 16 16 C 1.34771 * 120.63197 * 126.41547 * 15 14 13 17 17 O 1.21648 * 120.00333 * 176.58351 * 16 15 14 18 18 C 1.47053 * 119.99972 * 356.58408 * 16 15 14 19 19 C 1.37601 * 119.92866 * 229.72125 * 18 16 15 20 20 C 1.39945 * 120.01318 * 179.69311 * 19 18 16 21 21 C 1.36213 * 119.91399 * 0.59301 * 20 19 18 22 22 C 1.40922 * 119.80377 * 359.70118 * 21 20 19 23 23 N 1.32574 * 132.18427 * 180.02562 * 22 21 20 24 24 C 1.33247 * 109.13621 * 179.97438 * 23 22 21 25 25 C 1.35453 * 108.57312 * 359.97438 * 24 23 22 26 26 N 1.36248 * 107.18016 * 0.02562 * 25 24 23 27 27 C 1.46932 * 118.73752 * 306.39550 * 15 14 13 28 28 H 0.96995 * 120.00074 * 359.72209 * 1 2 3 29 29 H 0.96996 * 119.99857 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.45577 * 301.33335 * 12 10 9 31 31 H 1.08993 * 109.45912 * 61.30540 * 12 10 9 32 32 H 1.09006 * 109.49774 * 58.58534 * 13 12 10 33 33 H 1.08996 * 109.50134 * 178.64630 * 13 12 10 34 34 H 1.09004 * 109.59072 * 174.42193 * 14 13 12 35 35 H 1.09004 * 109.58576 * 294.84880 * 14 13 12 36 36 H 1.07997 * 119.99374 * 359.97289 * 19 18 16 37 37 H 1.07994 * 120.04379 * 180.31426 * 20 19 18 38 38 H 1.08001 * 120.09682 * 179.67351 * 21 20 19 39 39 H 1.07996 * 125.71029 * 179.97438 * 24 23 22 40 40 H 1.08003 * 126.40861 * 180.02562 * 25 24 23 41 41 H 1.09000 * 109.58528 * 293.82025 * 27 15 14 42 42 H 1.08993 * 109.58361 * 173.39417 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0500 -1.4001 5 1 1.4505 2.6510 0.7059 6 1 3.5506 1.4386 0.6942 7 6 2.0104 -1.2020 -0.0058 8 1 1.4704 -2.1373 -0.0058 9 7 3.3797 -1.2019 -0.0115 10 6 4.1123 -2.4706 -0.0182 11 1 3.5623 -3.2052 -0.6063 12 6 5.4975 -2.2574 -0.6330 13 6 6.2512 -3.5888 -0.6704 14 6 6.4316 -4.1093 0.7590 15 7 5.1146 -4.1795 1.4065 16 6 4.6908 -5.3238 1.9787 17 8 3.6257 -5.3523 2.5656 18 6 5.5161 -6.5379 1.8936 19 6 4.9518 -7.7243 1.4844 20 6 5.7370 -8.8794 1.3966 21 6 7.0572 -8.8302 1.7283 22 6 7.6279 -7.6136 2.1527 23 7 8.8579 -7.2898 2.5266 24 6 8.8928 -5.9950 2.8391 25 6 7.6550 -5.4746 2.6609 26 7 6.8514 -6.4865 2.2289 27 6 4.2684 -2.9784 1.4188 28 1 -0.4850 0.8400 0.0041 29 1 3.8646 -0.3619 -0.0118 30 1 5.3893 -1.8728 -1.6470 31 1 6.0558 -1.5411 -0.0305 32 1 5.6812 -4.3133 -1.2522 33 1 7.2283 -3.4410 -1.1303 34 1 6.8791 -5.1029 0.7325 35 1 7.0770 -3.4304 1.3164 36 1 3.9038 -7.7630 1.2265 37 1 5.2957 -9.8096 1.0705 38 1 7.6646 -9.7210 1.6667 39 1 9.7624 -5.4515 3.1778 40 1 7.3602 -4.4494 2.8297 41 1 4.7375 -2.2072 2.0299 42 1 3.2888 -3.2258 1.8274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999684115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:34 Heat of formation + Delta-G solvation = 93.535990 kcal Electronic energy + Delta-G solvation = -26411.796770 eV Core-core repulsion = 22780.422872 eV Total energy + Delta-G solvation = -3631.373898 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.28900 -40.16956 -37.97837 -37.07171 -35.01841 -33.88636 -32.42104 -31.47014 -30.62585 -29.24100 -28.98598 -26.00807 -24.47180 -23.80319 -22.95849 -22.34182 -21.95480 -20.56347 -19.17634 -18.53125 -17.62698 -17.50589 -16.72933 -16.48103 -15.87593 -15.64465 -15.14595 -14.75259 -14.45956 -14.39462 -14.14740 -13.98281 -13.78526 -13.27093 -12.88897 -12.80315 -12.71863 -12.56452 -12.35834 -12.04080 -11.85445 -11.41152 -11.20664 -11.01982 -10.85016 -10.74320 -10.60312 -10.39613 -10.02595 -10.01626 -9.66302 -9.25389 -9.12789 -8.64232 -8.14912 -7.40090 -5.84708 -3.23140 0.13690 0.96553 1.96108 2.39886 2.63900 2.90297 3.23981 3.30694 3.33084 3.39790 3.88092 4.00386 4.24166 4.50829 4.54193 4.61524 4.67733 4.84646 5.01175 5.02700 5.11012 5.21118 5.25299 5.30303 5.33352 5.47677 5.59303 5.63739 5.66904 5.73282 5.77338 5.87383 5.93911 6.07170 6.09069 6.21775 6.30364 6.38523 6.55761 6.65428 6.73143 7.23454 7.55328 7.86969 7.92260 8.33516 9.10030 9.81626 9.99426 11.33036 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.003508 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.343026 B = 7980.727460 C = 8545.477313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.009 3.991 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.253 4.253 8 H 0.092 0.908 9 N -0.741 5.741 10 C 0.174 3.826 11 H 0.061 0.939 12 C -0.130 4.130 13 C -0.129 4.129 14 C 0.095 3.905 15 N -0.593 5.593 16 C 0.557 3.443 17 O -0.512 6.512 18 C 0.045 3.955 19 C -0.077 4.077 20 C -0.108 4.108 21 C -0.061 4.061 22 C 0.212 3.788 23 N -0.487 5.487 24 C 0.035 3.965 25 C -0.096 4.096 26 N -0.347 5.347 27 C 0.091 3.909 28 H 0.261 0.739 29 H 0.363 0.637 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.184 0.816 40 H 0.184 0.816 41 H 0.066 0.934 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.436 -15.127 1.430 23.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.187 4.187 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.382 4.382 8 H 0.110 0.890 9 N -0.383 5.383 10 C 0.063 3.937 11 H 0.079 0.921 12 C -0.168 4.168 13 C -0.168 4.168 14 C -0.028 4.028 15 N -0.326 5.326 16 C 0.342 3.658 17 O -0.386 6.386 18 C -0.061 4.061 19 C -0.098 4.098 20 C -0.131 4.131 21 C -0.081 4.081 22 C -0.029 4.029 23 N -0.207 5.207 24 C -0.118 4.118 25 C -0.228 4.228 26 N -0.021 5.021 27 C -0.033 4.033 28 H 0.071 0.929 29 H 0.196 0.804 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.177 0.823 37 H 0.169 0.831 38 H 0.172 0.828 39 H 0.201 0.799 40 H 0.201 0.799 41 H 0.084 0.916 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 18.213 -15.608 1.784 24.052 hybrid contribution -0.066 1.950 0.062 1.952 sum 18.147 -13.658 1.846 22.787 Atomic orbital electron populations 1.69703 1.05140 1.25989 1.56712 1.24687 0.95223 0.97245 1.01542 0.86559 0.79189 0.84975 0.77805 1.20984 1.21623 1.20323 1.19081 0.80299 0.94902 1.43944 0.89040 1.42720 1.04175 1.01624 1.89733 1.20450 0.91105 0.89680 0.92479 0.92091 1.21878 0.96603 0.96315 1.02037 1.21882 1.01068 0.98228 0.95604 1.22332 0.84145 1.02056 0.94266 1.48318 1.18415 1.11337 1.54565 1.17658 0.85742 0.82182 0.80263 1.90913 1.22303 1.83625 1.41807 1.20519 0.81874 0.97296 1.06384 1.21265 1.01487 0.89510 0.97558 1.21010 0.93074 0.98887 1.00151 1.20425 0.95184 0.94664 0.97815 1.21022 0.87405 0.88532 1.05983 1.70685 1.16110 1.14328 1.19579 1.22556 0.96645 0.90728 1.01842 1.22905 0.91698 0.95119 1.13125 1.43007 1.06965 1.10983 1.41160 1.22894 0.95524 0.83652 1.01216 0.92896 0.80366 0.91021 0.91981 0.91351 0.90647 0.89942 0.90563 0.82267 0.83136 0.82789 0.79921 0.79887 0.91583 0.88317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.78 13.97 55.49 0.78 -28.01 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.18 16 3 Si 0.88 21.45 27.74 -169.99 -4.71 16.74 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 6 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 7 C -0.25 -6.93 10.41 -15.06 -0.16 -7.09 16 8 H 0.09 2.74 8.06 -52.48 -0.42 2.31 16 9 N -0.74 -16.61 4.93 -53.31 -0.26 -16.87 16 10 C 0.17 3.13 2.92 -67.81 -0.20 2.93 16 11 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 12 C -0.13 -1.79 5.35 -26.69 -0.14 -1.93 16 13 C -0.13 -1.42 6.08 -26.61 -0.16 -1.58 16 14 C 0.10 1.04 4.13 -3.71 -0.02 1.03 16 15 N -0.59 -8.43 2.95 -174.17 -0.51 -8.95 16 16 C 0.56 8.54 7.02 -12.69 -0.09 8.45 16 17 O -0.51 -9.80 16.45 5.23 0.09 -9.71 16 18 C 0.05 0.56 5.63 -81.86 -0.46 0.10 16 19 C -0.08 -0.77 9.67 -39.17 -0.38 -1.15 16 20 C -0.11 -0.81 10.04 -39.67 -0.40 -1.21 16 21 C -0.06 -0.53 10.09 -39.29 -0.40 -0.92 16 22 C 0.21 2.47 7.80 -156.03 -1.22 1.25 16 23 N -0.49 -5.98 11.31 -12.76 -0.14 -6.12 16 24 C 0.04 0.36 11.83 -17.93 -0.21 0.14 16 25 C -0.10 -1.02 8.45 -16.58 -0.14 -1.16 16 26 N -0.35 -4.10 2.14 -58.75 -0.13 -4.23 16 27 C 0.09 1.57 6.01 -3.70 -0.02 1.54 16 28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 29 H 0.36 7.93 5.66 -40.82 -0.23 7.69 16 30 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.89 4.33 -51.93 -0.22 0.67 16 35 H 0.08 0.72 6.94 -51.93 -0.36 0.36 16 36 H 0.16 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.15 0.63 8.06 -52.49 -0.42 0.20 16 38 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.18 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.18 1.73 6.08 -52.48 -0.32 1.41 16 41 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.10 2.04 7.02 -51.93 -0.36 1.68 16 LS Contribution 338.58 15.07 5.10 5.10 Total: -1.00 -34.25 338.58 -9.20 -43.45 By element: Atomic # 1 Polarization: 13.34 SS G_CDS: -5.32 Total: 8.02 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -4.09 Total: 0.58 kcal Atomic # 7 Polarization: -63.90 SS G_CDS: -0.27 Total: -64.17 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.71 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.74 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.25 -9.20 -43.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999684115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.985 kcal (2) G-P(sol) polarization free energy of solvation -34.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds