Wall clock time and date at job start Fri Apr 10 2020 23:00:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86804 * 119.99746 * 2 1 4 4 H 1.48504 * 109.47279 * 270.27814 * 3 2 1 5 5 H 1.48501 * 109.47100 * 30.27797 * 3 2 1 6 6 H 1.48496 * 109.46994 * 150.27439 * 3 2 1 7 7 C 1.38806 * 120.00632 * 180.27590 * 2 1 3 8 8 H 1.08005 * 119.99234 * 359.72195 * 7 2 1 9 9 N 1.36930 * 120.00413 * 179.72519 * 7 2 1 10 10 C 1.46500 * 120.00103 * 180.02562 * 9 7 2 11 11 H 1.09002 * 109.49812 * 34.93245 * 10 9 7 12 12 C 1.53042 * 109.50033 * 155.00104 * 10 9 7 13 13 C 1.53038 * 109.53831 * 181.31527 * 12 10 9 14 14 C 1.53191 * 109.31502 * 298.63495 * 13 12 10 15 15 N 1.46927 * 108.77789 * 54.63328 * 14 13 12 16 16 C 1.34771 * 120.63197 * 126.41547 * 15 14 13 17 17 O 1.21648 * 120.00333 * 176.58351 * 16 15 14 18 18 C 1.47053 * 119.99972 * 356.58408 * 16 15 14 19 19 C 1.37601 * 119.92866 * 229.72125 * 18 16 15 20 20 C 1.39945 * 120.01318 * 179.69311 * 19 18 16 21 21 C 1.36213 * 119.91399 * 0.59301 * 20 19 18 22 22 C 1.40922 * 119.80377 * 359.70118 * 21 20 19 23 23 N 1.32574 * 132.18427 * 180.02562 * 22 21 20 24 24 C 1.33247 * 109.13621 * 179.97438 * 23 22 21 25 25 C 1.35453 * 108.57312 * 359.97438 * 24 23 22 26 26 N 1.36248 * 107.18016 * 0.02562 * 25 24 23 27 27 C 1.46932 * 118.73752 * 306.39550 * 15 14 13 28 28 H 0.96995 * 120.00074 * 359.72209 * 1 2 3 29 29 H 0.96996 * 119.99857 * 359.97438 * 9 7 2 30 30 H 1.08996 * 109.45577 * 301.33335 * 12 10 9 31 31 H 1.08993 * 109.45912 * 61.30540 * 12 10 9 32 32 H 1.09006 * 109.49774 * 58.58534 * 13 12 10 33 33 H 1.08996 * 109.50134 * 178.64630 * 13 12 10 34 34 H 1.09004 * 109.59072 * 174.42193 * 14 13 12 35 35 H 1.09004 * 109.58576 * 294.84880 * 14 13 12 36 36 H 1.07997 * 119.99374 * 359.97289 * 19 18 16 37 37 H 1.07994 * 120.04379 * 180.31426 * 20 19 18 38 38 H 1.08001 * 120.09682 * 179.67351 * 21 20 19 39 39 H 1.07996 * 125.71029 * 179.97438 * 24 23 22 40 40 H 1.08003 * 126.40861 * 180.02562 * 25 24 23 41 41 H 1.09000 * 109.58528 * 293.82025 * 27 15 14 42 42 H 1.08993 * 109.58361 * 173.39417 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0500 -1.4001 5 1 1.4505 2.6510 0.7059 6 1 3.5506 1.4386 0.6942 7 6 2.0104 -1.2020 -0.0058 8 1 1.4704 -2.1373 -0.0058 9 7 3.3797 -1.2019 -0.0115 10 6 4.1123 -2.4706 -0.0182 11 1 3.5623 -3.2052 -0.6063 12 6 5.4975 -2.2574 -0.6330 13 6 6.2512 -3.5888 -0.6704 14 6 6.4316 -4.1093 0.7590 15 7 5.1146 -4.1795 1.4065 16 6 4.6908 -5.3238 1.9787 17 8 3.6257 -5.3523 2.5656 18 6 5.5161 -6.5379 1.8936 19 6 4.9518 -7.7243 1.4844 20 6 5.7370 -8.8794 1.3966 21 6 7.0572 -8.8302 1.7283 22 6 7.6279 -7.6136 2.1527 23 7 8.8579 -7.2898 2.5266 24 6 8.8928 -5.9950 2.8391 25 6 7.6550 -5.4746 2.6609 26 7 6.8514 -6.4865 2.2289 27 6 4.2684 -2.9784 1.4188 28 1 -0.4850 0.8400 0.0041 29 1 3.8646 -0.3619 -0.0118 30 1 5.3893 -1.8728 -1.6470 31 1 6.0558 -1.5411 -0.0305 32 1 5.6812 -4.3133 -1.2522 33 1 7.2283 -3.4410 -1.1303 34 1 6.8791 -5.1029 0.7325 35 1 7.0770 -3.4304 1.3164 36 1 3.9038 -7.7630 1.2265 37 1 5.2957 -9.8096 1.0705 38 1 7.6646 -9.7210 1.6667 39 1 9.7624 -5.4515 3.1778 40 1 7.3602 -4.4494 2.8297 41 1 4.7375 -2.2072 2.0299 42 1 3.2888 -3.2258 1.8274 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999684115.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:34 Heat of formation + Delta-G solvation = 70.842809 kcal Electronic energy + Delta-G solvation = -26412.780820 eV Core-core repulsion = 22780.422872 eV Total energy + Delta-G solvation = -3632.357948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -44.09501 -41.34781 -39.14511 -38.01040 -36.54853 -34.92778 -33.88531 -33.06119 -31.49014 -30.54121 -30.03278 -27.11680 -25.86217 -25.05340 -23.73777 -23.41951 -23.14747 -21.93005 -20.32832 -19.57889 -19.48001 -18.34942 -17.70803 -17.36355 -17.08271 -16.56099 -16.39520 -16.28410 -15.70553 -15.54479 -15.29980 -15.18672 -14.89830 -14.54828 -14.33511 -14.06723 -13.98609 -13.42864 -13.40560 -13.13779 -13.00436 -12.84717 -12.60768 -12.29864 -12.15964 -12.02493 -11.87179 -11.77987 -11.56366 -11.44954 -11.15926 -11.04625 -10.09317 -9.87835 -9.34996 -8.93472 -8.06244 -5.43138 -0.67120 0.22258 0.99189 1.36241 1.41482 1.44891 1.49414 1.64973 1.95559 2.45516 2.45795 2.95207 3.24347 3.26272 3.40839 3.50522 3.82539 3.87774 3.88608 3.91248 4.00573 4.13675 4.22515 4.32057 4.42709 4.44684 4.53206 4.54928 4.73193 4.75894 4.80849 4.90964 4.96776 5.02424 5.07801 5.22573 5.28842 5.34366 5.38415 5.59358 5.71277 5.84360 6.07121 6.17019 6.71167 6.77184 7.02481 7.74317 7.96208 9.15273 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.003508 C = 0.003276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.343026 B = 7980.727460 C = 8545.477313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.984 5.984 2 C -0.062 4.062 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.298 1.298 6 H -0.245 1.245 7 C -0.240 4.240 8 H 0.047 0.953 9 N -0.742 5.742 10 C 0.171 3.829 11 H 0.034 0.966 12 C -0.120 4.120 13 C -0.121 4.121 14 C 0.095 3.905 15 N -0.589 5.589 16 C 0.555 3.445 17 O -0.565 6.565 18 C 0.015 3.985 19 C -0.066 4.066 20 C -0.098 4.098 21 C -0.055 4.055 22 C 0.193 3.807 23 N -0.511 5.511 24 C 0.037 3.963 25 C -0.109 4.109 26 N -0.350 5.350 27 C 0.104 3.896 28 H 0.259 0.741 29 H 0.371 0.629 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.059 0.941 33 H 0.112 0.888 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.163 0.837 37 H 0.192 0.808 38 H 0.183 0.817 39 H 0.212 0.788 40 H 0.191 0.809 41 H 0.077 0.923 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.470 -15.650 0.884 27.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.788 3.212 4 H -0.200 1.200 5 H -0.225 1.225 6 H -0.169 1.169 7 C -0.371 4.371 8 H 0.065 0.935 9 N -0.385 5.385 10 C 0.062 3.938 11 H 0.052 0.948 12 C -0.158 4.158 13 C -0.160 4.160 14 C -0.027 4.027 15 N -0.321 5.321 16 C 0.342 3.658 17 O -0.444 6.444 18 C -0.091 4.091 19 C -0.087 4.087 20 C -0.121 4.121 21 C -0.075 4.075 22 C -0.048 4.048 23 N -0.232 5.232 24 C -0.116 4.116 25 C -0.240 4.240 26 N -0.024 5.024 27 C -0.021 4.021 28 H 0.068 0.932 29 H 0.206 0.794 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.078 0.922 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.120 0.880 36 H 0.180 0.820 37 H 0.209 0.791 38 H 0.200 0.800 39 H 0.229 0.771 40 H 0.208 0.792 41 H 0.095 0.905 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 22.343 -16.170 1.220 27.607 hybrid contribution -1.327 1.915 0.233 2.342 sum 21.016 -14.254 1.454 25.435 Atomic orbital electron populations 1.69910 1.07450 1.26925 1.59062 1.25599 0.96141 1.01639 1.01995 0.85329 0.78741 0.78872 0.78299 1.20027 1.22473 1.16930 1.18953 0.82650 0.93221 1.42241 0.93504 1.42627 1.02359 1.03632 1.89865 1.20610 0.93171 0.87276 0.92790 0.94798 1.21793 0.93667 0.98499 1.01877 1.21873 1.02305 0.96202 0.95584 1.22599 0.82425 1.03283 0.94351 1.48301 1.19174 1.10146 1.54440 1.18111 0.85349 0.83115 0.79211 1.90877 1.24824 1.84563 1.44138 1.20131 0.82323 0.96541 1.10079 1.21606 1.01982 0.89654 0.95500 1.21385 0.92424 0.99212 0.99065 1.20904 0.95775 0.94606 0.96200 1.21573 0.87447 0.89358 1.06445 1.70698 1.16533 1.15378 1.20544 1.23056 0.97391 0.90235 1.00886 1.23160 0.91842 0.95468 1.13567 1.43028 1.06522 1.11528 1.41303 1.22392 0.94212 0.85181 1.00317 0.93211 0.79442 0.90824 0.90058 0.92224 0.86987 0.89152 0.88025 0.81980 0.79106 0.79994 0.77118 0.79186 0.90485 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.64 13.97 21.65 0.30 -63.34 16 2 C -0.06 -3.66 5.50 84.86 0.47 -3.19 16 3 Si 0.96 44.42 27.74 68.60 1.90 46.32 16 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 5 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 6 H -0.25 -9.92 6.52 99.48 0.65 -9.27 16 7 C -0.24 -13.72 10.41 84.03 0.88 -12.85 16 8 H 0.05 3.03 8.06 -2.91 -0.02 3.01 16 9 N -0.74 -33.39 4.93 -322.56 -1.59 -34.98 16 10 C 0.17 6.21 2.92 45.07 0.13 6.35 16 11 H 0.03 1.40 8.08 -2.39 -0.02 1.38 16 12 C -0.12 -3.00 5.35 30.62 0.16 -2.84 16 13 C -0.12 -2.29 6.08 30.67 0.19 -2.11 16 14 C 0.09 1.86 4.13 86.36 0.36 2.21 16 15 N -0.59 -16.75 2.95 -823.18 -2.42 -19.17 16 16 C 0.56 17.59 7.02 86.56 0.61 18.20 16 17 O -0.57 -23.18 16.45 -4.18 -0.07 -23.25 16 18 C 0.01 0.36 5.63 40.37 0.23 0.59 16 19 C -0.07 -1.25 9.67 22.53 0.22 -1.03 16 20 C -0.10 -1.18 10.04 22.21 0.22 -0.95 16 21 C -0.06 -0.78 10.09 22.46 0.23 -0.56 16 22 C 0.19 4.07 7.80 134.10 1.05 5.11 16 23 N -0.51 -11.40 11.31 -194.28 -2.20 -13.60 16 24 C 0.04 0.66 11.83 83.83 0.99 1.65 16 25 C -0.11 -2.10 8.45 83.36 0.70 -1.39 16 26 N -0.35 -7.75 2.14 -339.78 -0.73 -8.48 16 27 C 0.10 3.68 6.01 86.36 0.52 4.20 16 28 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 29 H 0.37 15.50 5.66 -92.71 -0.52 14.97 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 32 H 0.06 1.26 8.14 -2.38 -0.02 1.24 16 33 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.09 1.74 4.33 -2.38 -0.01 1.73 16 35 H 0.10 1.54 6.94 -2.38 -0.02 1.52 16 36 H 0.16 2.90 8.06 -2.91 -0.02 2.88 16 37 H 0.19 0.73 8.06 -2.91 -0.02 0.70 16 38 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 39 H 0.21 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.19 3.21 6.08 -2.91 -0.02 3.19 16 41 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.05 2.34 7.02 -2.39 -0.02 2.32 16 Total: -1.00 -80.61 338.58 2.61 -78.00 By element: Atomic # 1 Polarization: 24.63 SS G_CDS: 0.47 Total: 25.11 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: 6.95 Total: 13.39 kcal Atomic # 7 Polarization: -132.93 SS G_CDS: -6.64 Total: -139.57 kcal Atomic # 8 Polarization: -23.18 SS G_CDS: -0.07 Total: -23.25 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.32 kcal Total: -80.61 2.61 -78.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999684115.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.840 kcal (2) G-P(sol) polarization free energy of solvation -80.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds