Wall clock time and date at job start Fri Apr 10 2020 23:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99921 * 2 1 4 4 H 1.48494 * 109.46955 * 269.99836 * 3 2 1 5 5 H 1.48496 * 109.47209 * 30.00242 * 3 2 1 6 6 H 1.48508 * 109.46652 * 149.99987 * 3 2 1 7 7 C 1.38816 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99666 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99832 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.49511 * 324.99425 * 10 9 7 12 12 C 1.53044 * 109.52214 * 204.91989 * 10 9 7 13 13 C 1.53047 * 109.53413 * 178.66576 * 12 10 9 14 14 C 1.53191 * 109.31233 * 61.36417 * 13 12 10 15 15 N 1.46925 * 108.77343 * 305.36361 * 14 13 12 16 16 C 1.34779 * 120.62887 * 233.58398 * 15 14 13 17 17 O 1.21586 * 120.00256 * 174.19952 * 16 15 14 18 18 C 1.47652 * 119.99860 * 354.20415 * 16 15 14 19 19 C 1.41773 * 120.37533 * 319.05781 * 18 16 15 20 20 C 1.34541 * 120.15265 * 179.73418 * 19 18 16 21 21 N 1.36728 * 120.95109 * 0.57459 * 20 19 18 22 22 C 1.36431 * 132.26515 * 179.71197 * 21 20 19 23 23 C 1.35452 * 107.21917 * 179.97438 * 22 21 20 24 24 N 1.33180 * 108.62027 * 359.97438 * 23 22 21 25 25 C 1.32651 * 109.12884 * 0.02562 * 24 23 22 26 26 C 1.38445 * 120.37536 * 139.34133 * 18 16 15 27 27 C 1.46922 * 118.73999 * 53.61317 * 15 14 13 28 28 H 0.96999 * 119.99368 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00130 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.45881 * 298.68154 * 12 10 9 31 31 H 1.09000 * 109.46053 * 58.64703 * 12 10 9 32 32 H 1.09000 * 109.49840 * 301.40825 * 13 12 10 33 33 H 1.08999 * 109.51971 * 181.33231 * 13 12 10 34 34 H 1.09003 * 109.58299 * 185.57546 * 14 13 12 35 35 H 1.09000 * 109.70504 * 65.22346 * 14 13 12 36 36 H 1.08008 * 119.92591 * 0.02562 * 19 18 16 37 37 H 1.08002 * 119.52494 * 180.25788 * 20 19 18 38 38 H 1.08001 * 126.39148 * 359.97438 * 22 21 20 39 39 H 1.08001 * 125.68959 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.44810 * 359.95038 * 26 18 16 41 41 H 1.09002 * 109.58471 * 186.60496 * 27 15 14 42 42 H 1.08999 * 109.58842 * 66.17911 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9693 -3.5513 -0.5871 12 6 1.1813 -4.7540 -0.6063 13 6 1.9583 -6.0723 -0.6358 14 6 2.3193 -6.4797 0.7962 15 7 3.0381 -5.3698 1.4366 16 6 4.2412 -5.5708 2.0099 17 8 4.8737 -4.6270 2.4429 18 6 4.7913 -6.9372 2.1120 19 6 3.9500 -8.0247 2.4578 20 6 4.4549 -9.2688 2.5443 21 7 5.7814 -9.5070 2.3140 22 6 6.5270 -10.6492 2.3420 23 6 7.7996 -10.3051 2.0310 24 7 7.8445 -8.9915 1.8158 25 6 6.6309 -8.4822 1.9816 26 6 6.1356 -7.1701 1.8768 27 6 2.4202 -4.0369 1.4408 28 1 -0.4849 0.8401 0.0004 29 1 0.3556 -2.3880 0.0005 30 1 0.2819 -4.8761 -0.0029 31 1 0.9019 -4.4744 -1.6221 32 1 2.8704 -5.9441 -1.2185 33 1 1.3422 -6.8481 -1.0904 34 1 2.9564 -7.3639 0.7748 35 1 1.4101 -6.6980 1.3565 36 1 2.9004 -7.8548 2.6476 37 1 3.8040 -10.0904 2.8045 38 1 6.1693 -11.6424 2.5698 39 1 8.6380 -10.9830 1.9673 40 1 6.7947 -6.3554 1.6157 41 1 3.1240 -3.3091 1.8448 42 1 1.5180 -4.0542 2.0522 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999687338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:37 Heat of formation + Delta-G solvation = 80.182402 kcal Electronic energy + Delta-G solvation = -25631.541433 eV Core-core repulsion = 21999.588480 eV Total energy + Delta-G solvation = -3631.952953 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.12411 -40.24448 -37.67231 -37.07687 -34.56485 -33.85577 -32.37896 -31.27665 -30.66447 -29.33690 -28.23615 -25.81938 -24.37518 -23.73634 -23.27273 -22.11210 -21.93128 -20.41337 -19.12570 -18.23584 -17.79755 -17.11549 -16.49329 -16.28350 -15.95454 -15.24277 -14.95254 -14.74703 -14.51283 -14.36913 -14.17366 -13.83282 -13.63084 -13.43515 -13.10822 -12.87113 -12.49159 -12.45527 -12.24430 -12.06872 -11.40769 -11.26322 -11.00592 -10.85647 -10.68951 -10.61290 -10.45990 -10.21946 -9.91403 -9.86264 -9.65974 -9.17461 -9.10678 -8.45757 -8.17235 -7.02468 -5.80320 -3.10293 0.26213 0.75567 2.22781 2.41866 2.73346 2.97794 3.32731 3.44709 3.50354 3.52970 3.91766 4.06055 4.28786 4.35803 4.56606 4.63568 4.84004 4.94267 5.01210 5.03843 5.11509 5.21039 5.30400 5.43645 5.47461 5.57154 5.58353 5.73034 5.75608 5.87288 5.96979 6.03139 6.11616 6.16800 6.25435 6.29739 6.43600 6.64188 6.66881 6.78559 6.95503 7.50517 7.52822 7.71107 8.20802 8.37905 9.49874 10.03072 10.38282 11.41846 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025271 B = 0.002911 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.738813 B = 9614.808063 C =10294.581463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.243 4.243 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.168 3.832 11 H 0.052 0.948 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.099 3.901 15 N -0.597 5.597 16 C 0.558 3.442 17 O -0.527 6.527 18 C -0.110 4.110 19 C -0.115 4.115 20 C 0.046 3.954 21 N -0.356 5.356 22 C -0.095 4.095 23 C 0.031 3.969 24 N -0.482 5.482 25 C 0.213 3.787 26 C -0.013 4.013 27 C 0.092 3.908 28 H 0.256 0.744 29 H 0.385 0.615 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.159 0.841 37 H 0.169 0.831 38 H 0.184 0.816 39 H 0.183 0.817 40 H 0.161 0.839 41 H 0.093 0.907 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.840 -25.906 3.666 26.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.374 4.374 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.070 0.930 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.024 4.024 15 N -0.330 5.330 16 C 0.344 3.656 17 O -0.404 6.404 18 C -0.119 4.119 19 C -0.136 4.136 20 C -0.075 4.075 21 N -0.028 5.028 22 C -0.228 4.228 23 C -0.122 4.122 24 N -0.201 5.201 25 C -0.029 4.029 26 C -0.035 4.035 27 C -0.032 4.032 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.177 0.823 37 H 0.186 0.814 38 H 0.201 0.799 39 H 0.200 0.800 40 H 0.179 0.821 41 H 0.111 0.889 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.945 -24.806 3.687 26.023 hybrid contribution -0.707 0.265 0.289 0.808 sum 6.238 -24.542 3.976 25.632 Atomic orbital electron populations 1.69664 1.05131 1.25793 1.57457 1.24751 0.95522 0.97781 1.02598 0.86189 0.78859 0.83643 0.77564 1.21659 1.21733 1.20525 1.19277 0.91138 0.83939 1.43055 0.90983 1.42374 1.05796 0.99570 1.88084 1.20489 0.94997 0.86478 0.92339 0.93026 1.21833 0.98656 0.94048 1.01933 1.21889 1.01022 0.98291 0.95692 1.22046 0.96828 0.89382 0.94127 1.48181 1.18395 1.11455 1.54968 1.17970 0.81321 0.87415 0.78862 1.90846 1.58502 1.42633 1.48379 1.20018 0.93597 0.94528 1.03782 1.20976 1.01239 0.90180 1.01177 1.21447 0.82796 0.99264 1.03976 1.42861 1.07913 1.09409 1.42568 1.22768 0.92580 0.90991 1.16425 1.22604 0.96067 0.92174 1.01372 1.70707 1.18183 1.09216 1.22021 1.20774 0.86367 0.90075 1.05675 1.20625 0.94150 0.92824 0.95853 1.22875 0.97803 0.81168 1.01369 0.93459 0.78059 0.91978 0.91327 0.91516 0.90925 0.89766 0.91150 0.82315 0.81413 0.79854 0.80025 0.82108 0.88888 0.91731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.79 13.06 55.49 0.72 -27.07 16 2 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 3 Si 0.91 22.60 29.55 -169.99 -5.02 17.58 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.72 -17.47 5.12 -53.31 -0.27 -17.74 16 10 C 0.17 3.23 2.92 -67.81 -0.20 3.03 16 11 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 12 C -0.13 -1.88 5.36 -26.68 -0.14 -2.02 16 13 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 14 C 0.10 1.01 4.92 -3.71 -0.02 1.00 16 15 N -0.60 -8.59 2.97 -173.96 -0.52 -9.11 16 16 C 0.56 8.62 7.32 -12.42 -0.09 8.53 16 17 O -0.53 -10.45 16.36 5.29 0.09 -10.36 16 18 C -0.11 -1.32 5.11 -104.63 -0.53 -1.85 16 19 C -0.11 -0.95 7.34 -39.54 -0.29 -1.24 16 20 C 0.05 0.33 10.91 -16.68 -0.18 0.14 16 21 N -0.36 -3.37 2.94 -62.75 -0.18 -3.56 16 22 C -0.10 -0.73 11.74 -16.50 -0.19 -0.92 16 23 C 0.03 0.29 11.83 -17.96 -0.21 0.08 16 24 N -0.48 -6.23 11.31 -12.80 -0.14 -6.37 16 25 C 0.21 2.63 7.79 -155.97 -1.22 1.41 16 26 C -0.01 -0.17 9.76 -38.60 -0.38 -0.55 16 27 C 0.09 1.66 6.03 -3.72 -0.02 1.64 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.39 9.85 7.80 -40.82 -0.32 9.53 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.70 4.77 -51.93 -0.25 0.45 16 35 H 0.07 0.60 8.12 -51.93 -0.42 0.18 16 36 H 0.16 0.97 6.70 -52.48 -0.35 0.62 16 37 H 0.17 0.52 8.06 -52.49 -0.42 0.09 16 38 H 0.18 0.68 8.06 -52.49 -0.42 0.25 16 39 H 0.18 1.05 8.06 -52.49 -0.42 0.63 16 40 H 0.16 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.09 2.00 7.00 -51.93 -0.36 1.63 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 346.72 15.07 5.23 5.23 Total: -1.00 -34.94 346.72 -9.47 -44.41 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -5.47 Total: 6.63 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -3.88 Total: 0.38 kcal Atomic # 7 Polarization: -63.45 SS G_CDS: -0.39 Total: -63.85 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.94 -9.47 -44.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999687338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.589 kcal (2) G-P(sol) polarization free energy of solvation -34.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds