Wall clock time and date at job start Fri Apr 10 2020 23:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99921 * 2 1 4 4 H 1.48494 * 109.46955 * 269.99836 * 3 2 1 5 5 H 1.48496 * 109.47209 * 30.00242 * 3 2 1 6 6 H 1.48508 * 109.46652 * 149.99987 * 3 2 1 7 7 C 1.38816 * 119.99868 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99666 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99815 * 0.02562 * 7 2 1 10 10 C 1.46501 * 119.99832 * 180.02562 * 9 7 2 11 11 H 1.09006 * 109.49511 * 324.99425 * 10 9 7 12 12 C 1.53044 * 109.52214 * 204.91989 * 10 9 7 13 13 C 1.53047 * 109.53413 * 178.66576 * 12 10 9 14 14 C 1.53191 * 109.31233 * 61.36417 * 13 12 10 15 15 N 1.46925 * 108.77343 * 305.36361 * 14 13 12 16 16 C 1.34779 * 120.62887 * 233.58398 * 15 14 13 17 17 O 1.21586 * 120.00256 * 174.19952 * 16 15 14 18 18 C 1.47652 * 119.99860 * 354.20415 * 16 15 14 19 19 C 1.41773 * 120.37533 * 319.05781 * 18 16 15 20 20 C 1.34541 * 120.15265 * 179.73418 * 19 18 16 21 21 N 1.36728 * 120.95109 * 0.57459 * 20 19 18 22 22 C 1.36431 * 132.26515 * 179.71197 * 21 20 19 23 23 C 1.35452 * 107.21917 * 179.97438 * 22 21 20 24 24 N 1.33180 * 108.62027 * 359.97438 * 23 22 21 25 25 C 1.32651 * 109.12884 * 0.02562 * 24 23 22 26 26 C 1.38445 * 120.37536 * 139.34133 * 18 16 15 27 27 C 1.46922 * 118.73999 * 53.61317 * 15 14 13 28 28 H 0.96999 * 119.99368 * 359.97438 * 1 2 3 29 29 H 0.97002 * 120.00130 * 359.97438 * 9 7 2 30 30 H 1.08994 * 109.45881 * 298.68154 * 12 10 9 31 31 H 1.09000 * 109.46053 * 58.64703 * 12 10 9 32 32 H 1.09000 * 109.49840 * 301.40825 * 13 12 10 33 33 H 1.08999 * 109.51971 * 181.33231 * 13 12 10 34 34 H 1.09003 * 109.58299 * 185.57546 * 14 13 12 35 35 H 1.09000 * 109.70504 * 65.22346 * 14 13 12 36 36 H 1.08008 * 119.92591 * 0.02562 * 19 18 16 37 37 H 1.08002 * 119.52494 * 180.25788 * 20 19 18 38 38 H 1.08001 * 126.39148 * 359.97438 * 22 21 20 39 39 H 1.08001 * 125.68959 * 180.02562 * 23 22 21 40 40 H 1.07996 * 120.44810 * 359.95038 * 26 18 16 41 41 H 1.09002 * 109.58471 * 186.60496 * 27 15 14 42 42 H 1.08999 * 109.58842 * 66.17911 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6527 0.7001 6 1 3.5479 1.4401 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9693 -3.5513 -0.5871 12 6 1.1813 -4.7540 -0.6063 13 6 1.9583 -6.0723 -0.6358 14 6 2.3193 -6.4797 0.7962 15 7 3.0381 -5.3698 1.4366 16 6 4.2412 -5.5708 2.0099 17 8 4.8737 -4.6270 2.4429 18 6 4.7913 -6.9372 2.1120 19 6 3.9500 -8.0247 2.4578 20 6 4.4549 -9.2688 2.5443 21 7 5.7814 -9.5070 2.3140 22 6 6.5270 -10.6492 2.3420 23 6 7.7996 -10.3051 2.0310 24 7 7.8445 -8.9915 1.8158 25 6 6.6309 -8.4822 1.9816 26 6 6.1356 -7.1701 1.8768 27 6 2.4202 -4.0369 1.4408 28 1 -0.4849 0.8401 0.0004 29 1 0.3556 -2.3880 0.0005 30 1 0.2819 -4.8761 -0.0029 31 1 0.9019 -4.4744 -1.6221 32 1 2.8704 -5.9441 -1.2185 33 1 1.3422 -6.8481 -1.0904 34 1 2.9564 -7.3639 0.7748 35 1 1.4101 -6.6980 1.3565 36 1 2.9004 -7.8548 2.6476 37 1 3.8040 -10.0904 2.8045 38 1 6.1693 -11.6424 2.5698 39 1 8.6380 -10.9830 1.9673 40 1 6.7947 -6.3554 1.6157 41 1 3.1240 -3.3091 1.8448 42 1 1.5180 -4.0542 2.0522 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999687338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:36 Heat of formation + Delta-G solvation = 56.798532 kcal Electronic energy + Delta-G solvation = -25632.555434 eV Core-core repulsion = 21999.588480 eV Total energy + Delta-G solvation = -3632.966954 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.82934 -41.42602 -38.87884 -38.03783 -36.24115 -34.72528 -33.90681 -32.76686 -31.50995 -30.29386 -29.65986 -26.96733 -25.93424 -24.90666 -24.12317 -23.25208 -22.77731 -21.74574 -20.30629 -19.15323 -18.95636 -18.73445 -17.34803 -17.28150 -16.97587 -16.68811 -16.19079 -15.77335 -15.61814 -15.44053 -15.42684 -15.09126 -14.96788 -14.47965 -14.14068 -14.01440 -13.96112 -13.70703 -13.16681 -13.02487 -12.91876 -12.82126 -12.49654 -12.24309 -12.16781 -11.92436 -11.89437 -11.69002 -11.35756 -11.21733 -11.14672 -11.00361 -9.87098 -9.81097 -9.03855 -8.88332 -8.00257 -5.29005 -0.55219 0.07238 1.43236 1.44290 1.48972 1.53574 1.61345 1.81215 1.96875 2.44376 2.52177 3.09813 3.32817 3.40985 3.51686 3.71127 3.76649 3.98066 3.99686 4.05408 4.18267 4.31264 4.36857 4.38506 4.46134 4.53813 4.59996 4.65127 4.73564 4.85565 4.86612 4.90327 4.97253 5.04592 5.14235 5.35351 5.38006 5.43154 5.45909 5.55026 5.60671 6.03678 6.22993 6.34125 6.82518 6.99749 7.29932 8.01870 8.27585 9.22195 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.025271 B = 0.002911 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.738813 B = 9614.808063 C =10294.581463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.066 4.066 3 Si 0.966 3.034 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.245 4.245 8 H 0.062 0.938 9 N -0.728 5.728 10 C 0.166 3.834 11 H 0.026 0.974 12 C -0.118 4.118 13 C -0.123 4.123 14 C 0.094 3.906 15 N -0.592 5.592 16 C 0.553 3.447 17 O -0.587 6.587 18 C -0.108 4.108 19 C -0.126 4.126 20 C 0.072 3.928 21 N -0.359 5.359 22 C -0.068 4.068 23 C 0.009 3.991 24 N -0.526 5.526 25 C 0.183 3.817 26 C -0.038 4.038 27 C 0.107 3.893 28 H 0.253 0.747 29 H 0.379 0.621 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.115 0.885 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.189 0.811 37 H 0.224 0.776 38 H 0.234 0.766 39 H 0.208 0.792 40 H 0.135 0.865 41 H 0.047 0.953 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.554 -30.616 4.090 31.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.259 4.259 3 Si 0.795 3.205 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.377 4.377 8 H 0.080 0.920 9 N -0.368 5.368 10 C 0.056 3.944 11 H 0.044 0.956 12 C -0.156 4.156 13 C -0.162 4.162 14 C -0.027 4.027 15 N -0.323 5.323 16 C 0.342 3.658 17 O -0.468 6.468 18 C -0.117 4.117 19 C -0.146 4.146 20 C -0.048 4.048 21 N -0.031 5.031 22 C -0.201 4.201 23 C -0.143 4.143 24 N -0.247 5.247 25 C -0.058 4.058 26 C -0.059 4.059 27 C -0.018 4.018 28 H 0.062 0.938 29 H 0.212 0.788 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.122 0.878 36 H 0.206 0.794 37 H 0.241 0.759 38 H 0.250 0.750 39 H 0.225 0.775 40 H 0.153 0.847 41 H 0.066 0.934 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.668 -29.585 4.091 30.400 hybrid contribution -0.211 1.563 0.157 1.585 sum 5.456 -28.022 4.248 28.863 Atomic orbital electron populations 1.69781 1.06192 1.26174 1.59043 1.25448 0.96394 1.00662 1.03378 0.85263 0.77644 0.80050 0.77574 1.21102 1.21577 1.20403 1.19486 0.90953 0.85562 1.41713 0.91954 1.42484 1.05552 1.00506 1.88292 1.20661 0.94574 0.86224 0.92935 0.95625 1.21742 0.98597 0.94243 1.00998 1.21895 1.00610 0.97062 0.96588 1.22479 0.98317 0.88478 0.93424 1.48175 1.18320 1.11057 1.54794 1.18594 0.80952 0.88480 0.77784 1.90810 1.60099 1.44925 1.50934 1.19735 0.93711 0.93419 1.04819 1.21202 1.02047 0.89342 1.01988 1.22283 0.81950 1.00194 1.00370 1.43154 1.08750 1.09128 1.42090 1.23568 0.91587 0.91917 1.12978 1.23253 0.98205 0.91230 1.01606 1.70631 1.19321 1.11484 1.23274 1.20564 0.87129 0.90450 1.07645 1.20426 0.94449 0.93087 0.97982 1.22291 0.96895 0.82655 1.00000 0.93782 0.78831 0.90708 0.92235 0.92745 0.86686 0.86814 0.87779 0.79406 0.75909 0.74972 0.77487 0.84747 0.93420 0.91103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.64 13.06 21.65 0.28 -58.36 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 3 Si 0.97 47.77 29.55 68.60 2.03 49.80 16 4 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 5 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 6 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 7 C -0.25 -14.10 9.93 84.03 0.83 -13.27 16 8 H 0.06 3.63 7.83 -2.91 -0.02 3.60 16 9 N -0.73 -36.78 5.12 -322.57 -1.65 -38.44 16 10 C 0.17 6.59 2.92 45.07 0.13 6.72 16 11 H 0.03 1.14 8.08 -2.38 -0.02 1.12 16 12 C -0.12 -3.35 5.36 30.62 0.16 -3.19 16 13 C -0.12 -2.37 6.08 30.67 0.19 -2.19 16 14 C 0.09 1.58 4.92 86.36 0.43 2.01 16 15 N -0.59 -16.87 2.97 -822.53 -2.44 -19.31 16 16 C 0.55 17.75 7.32 86.73 0.64 18.38 16 17 O -0.59 -25.37 16.36 -3.99 -0.07 -25.43 16 18 C -0.11 -2.53 5.11 -19.87 -0.10 -2.64 16 19 C -0.13 -1.58 7.34 22.30 0.16 -1.42 16 20 C 0.07 0.62 10.91 83.08 0.91 1.52 16 21 N -0.36 -5.46 2.94 -352.44 -1.04 -6.50 16 22 C -0.07 -0.73 11.74 83.33 0.98 0.25 16 23 C 0.01 0.14 11.83 83.84 0.99 1.14 16 24 N -0.53 -13.58 11.31 -194.42 -2.20 -15.78 16 25 C 0.18 4.45 7.79 133.97 1.04 5.49 16 26 C -0.04 -1.01 9.76 22.91 0.22 -0.79 16 27 C 0.11 4.02 6.03 86.36 0.52 4.54 16 28 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 29 H 0.38 19.91 7.80 -92.71 -0.72 19.19 16 30 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.11 1.36 4.77 -2.39 -0.01 1.34 16 35 H 0.10 1.19 8.12 -2.39 -0.02 1.17 16 36 H 0.19 1.23 6.70 -2.91 -0.02 1.21 16 37 H 0.22 -0.53 8.06 -2.91 -0.02 -0.56 16 38 H 0.23 0.03 8.06 -2.91 -0.02 0.01 16 39 H 0.21 1.86 8.06 -2.91 -0.02 1.84 16 40 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 41 H 0.05 2.22 7.00 -2.39 -0.02 2.20 16 42 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -84.81 346.72 2.81 -82.00 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.33 Total: 18.85 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: 7.57 Total: 13.18 kcal Atomic # 7 Polarization: -131.33 SS G_CDS: -7.05 Total: -138.38 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -0.07 Total: -25.43 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 2.03 Total: 49.80 kcal Total: -84.81 2.81 -82.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999687338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.795 kcal (2) G-P(sol) polarization free energy of solvation -84.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds