Wall clock time and date at job start Fri Apr 10 2020 23:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99731 * 2 1 4 4 H 1.48500 * 109.47107 * 270.27913 * 3 2 1 5 5 H 1.48498 * 109.47098 * 30.27920 * 3 2 1 6 6 H 1.48498 * 109.46900 * 150.27990 * 3 2 1 7 7 C 1.38808 * 120.00013 * 180.28399 * 2 1 3 8 8 H 1.08000 * 119.99946 * 179.72115 * 7 2 1 9 9 N 1.36935 * 119.99995 * 359.71631 * 7 2 1 10 10 C 1.46506 * 120.00066 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.49299 * 34.93935 * 10 9 7 12 12 C 1.53036 * 109.49906 * 154.99857 * 10 9 7 13 13 C 1.53038 * 109.54123 * 181.31706 * 12 10 9 14 14 C 1.53191 * 109.31345 * 298.64147 * 13 12 10 15 15 N 1.46922 * 108.77701 * 54.63071 * 14 13 12 16 16 C 1.34777 * 120.63432 * 126.41526 * 15 14 13 17 17 O 1.21574 * 120.00523 * 176.20409 * 16 15 14 18 18 C 1.47657 * 119.99332 * 356.20768 * 16 15 14 19 19 C 1.41770 * 120.37514 * 50.48896 * 18 16 15 20 20 C 1.34546 * 120.14761 * 180.02562 * 19 18 16 21 21 N 1.36720 * 120.95563 * 359.97438 * 20 19 18 22 22 C 1.36431 * 132.26670 * 180.02562 * 21 20 19 23 23 C 1.35456 * 107.22056 * 179.97438 * 22 21 20 24 24 N 1.33184 * 108.62139 * 359.97438 * 23 22 21 25 25 C 1.32657 * 109.12414 * 0.02562 * 24 23 22 26 26 C 1.38438 * 120.36764 * 230.21194 * 18 16 15 27 27 C 1.46929 * 118.73942 * 306.38977 * 15 14 13 28 28 H 0.96993 * 120.00132 * 359.71758 * 1 2 3 29 29 H 0.96995 * 120.00375 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.46473 * 301.34454 * 12 10 9 31 31 H 1.09005 * 109.45531 * 61.31318 * 12 10 9 32 32 H 1.09003 * 109.49652 * 58.58665 * 13 12 10 33 33 H 1.08996 * 109.50317 * 178.65301 * 13 12 10 34 34 H 1.09003 * 109.59148 * 174.42129 * 14 13 12 35 35 H 1.09005 * 109.58402 * 294.70360 * 14 13 12 36 36 H 1.08000 * 119.93219 * 359.97438 * 19 18 16 37 37 H 1.07997 * 119.52023 * 179.97438 * 20 19 18 38 38 H 1.08001 * 126.39341 * 359.95734 * 22 21 20 39 39 H 1.07995 * 125.68948 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.45655 * 359.97438 * 26 18 16 41 41 H 1.08994 * 109.58929 * 293.82341 * 27 15 14 42 42 H 1.08998 * 109.58470 * 173.39050 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0499 -1.4001 5 1 1.4506 2.6510 0.7059 6 1 3.5507 1.4385 0.6941 7 6 2.0103 -1.2021 -0.0060 8 1 3.0903 -1.2021 -0.0105 9 7 1.3256 -2.3880 -0.0060 10 6 2.0582 -3.6568 -0.0117 11 1 2.9718 -3.5519 0.5735 12 6 1.1837 -4.7542 0.5990 13 6 1.9600 -6.0729 0.6235 14 6 2.3145 -6.4789 -0.8104 15 7 3.0310 -5.3687 -1.4528 16 6 4.2315 -5.5696 -2.0316 17 8 4.7827 -4.6595 -2.6198 18 6 4.8771 -6.8951 -1.9514 19 6 4.1578 -8.0653 -2.3024 20 6 4.7504 -9.2708 -2.2270 21 7 6.0482 -9.3919 -1.8144 22 6 6.8631 -10.4744 -1.6548 23 6 8.0601 -10.0144 -1.2183 24 7 7.9925 -8.6887 -1.1104 25 6 6.7801 -8.2849 -1.4666 26 6 6.1935 -7.0086 -1.5380 27 6 2.4137 -4.0354 -1.4529 28 1 -0.4850 0.8400 0.0041 29 1 0.3557 -2.3881 -0.0022 30 1 0.9088 -4.4757 1.6162 31 1 0.2815 -4.8753 -0.0007 32 1 2.8748 -5.9457 1.2023 33 1 1.3453 -6.8485 1.0803 34 1 2.9513 -7.3634 -0.7930 35 1 1.4016 -6.6968 -1.3648 36 1 3.1316 -7.9890 -2.6301 37 1 4.1929 -10.1556 -2.4965 38 1 6.6025 -11.5058 -1.8413 39 1 8.9250 -10.6214 -0.9951 40 1 6.7610 -6.1294 -1.2708 41 1 1.5089 -4.0516 -2.0603 42 1 3.1161 -3.3076 -1.8591 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999687352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:39 Heat of formation + Delta-G solvation = 79.552010 kcal Electronic energy + Delta-G solvation = -25660.029473 eV Core-core repulsion = 22028.049184 eV Total energy + Delta-G solvation = -3631.980289 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.11606 -40.23393 -37.67975 -37.07281 -34.55801 -33.85712 -32.36096 -31.27822 -30.67625 -29.34146 -28.23716 -25.80612 -24.37567 -23.75785 -23.26933 -22.10547 -21.92958 -20.41006 -19.11029 -18.23501 -17.78714 -17.11668 -16.54731 -16.29182 -15.96184 -15.24226 -14.94617 -14.74087 -14.47884 -14.42029 -14.16494 -13.84808 -13.62539 -13.43240 -13.13143 -12.81289 -12.51151 -12.44440 -12.25001 -12.06211 -11.41114 -11.27575 -11.00425 -10.85803 -10.68377 -10.62975 -10.45063 -10.22564 -9.91403 -9.86915 -9.66237 -9.16945 -9.10957 -8.45802 -8.16675 -7.02978 -5.80659 -3.10738 0.28558 0.76971 2.23180 2.43398 2.69099 2.97795 3.29137 3.44818 3.50368 3.51902 3.93161 4.05744 4.29401 4.35353 4.56380 4.63334 4.84729 4.94888 5.01645 5.04149 5.12323 5.21055 5.30181 5.44154 5.47846 5.57261 5.58488 5.73879 5.75578 5.86617 5.97640 6.03043 6.11618 6.16501 6.26348 6.29865 6.43170 6.64011 6.66805 6.77808 6.95020 7.50448 7.53341 7.70252 8.19986 8.37499 9.49463 10.02607 10.37825 11.41504 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023697 B = 0.002965 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.280189 B = 9442.004275 C =10062.500633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.244 4.244 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.052 0.948 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.098 3.902 15 N -0.595 5.595 16 C 0.558 3.442 17 O -0.527 6.527 18 C -0.106 4.106 19 C -0.116 4.116 20 C 0.048 3.952 21 N -0.356 5.356 22 C -0.096 4.096 23 C 0.032 3.968 24 N -0.482 5.482 25 C 0.215 3.785 26 C -0.018 4.018 27 C 0.092 3.908 28 H 0.256 0.744 29 H 0.386 0.614 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.158 0.842 37 H 0.169 0.831 38 H 0.184 0.816 39 H 0.183 0.817 40 H 0.160 0.840 41 H 0.064 0.936 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.569 -25.841 -2.683 26.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.206 4.206 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.375 4.375 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.070 0.930 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.025 4.025 15 N -0.328 5.328 16 C 0.344 3.656 17 O -0.404 6.404 18 C -0.115 4.115 19 C -0.136 4.136 20 C -0.073 4.073 21 N -0.028 5.028 22 C -0.228 4.228 23 C -0.122 4.122 24 N -0.202 5.202 25 C -0.027 4.027 26 C -0.039 4.039 27 C -0.032 4.032 28 H 0.066 0.934 29 H 0.220 0.780 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.176 0.824 37 H 0.186 0.814 38 H 0.201 0.799 39 H 0.200 0.800 40 H 0.178 0.822 41 H 0.083 0.917 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 7.574 -24.697 -2.726 25.976 hybrid contribution -0.617 0.199 -0.332 0.728 sum 6.957 -24.498 -3.057 25.649 Atomic orbital electron populations 1.69660 1.05133 1.25815 1.57404 1.24749 0.95519 0.97785 1.02564 0.86186 0.78732 0.83636 0.77653 1.21562 1.21760 1.20625 1.19270 0.91124 0.83945 1.43129 0.91000 1.42373 1.05810 0.99557 1.88045 1.20494 0.95043 0.86508 0.92272 0.93037 1.21831 0.98677 0.94035 1.01926 1.21885 1.01021 0.98285 0.95711 1.22024 0.96937 0.89383 0.94127 1.48212 1.18492 1.11400 1.54727 1.17974 0.81204 0.86815 0.79578 1.90847 1.63652 1.43521 1.42349 1.19994 0.94261 0.94356 1.02933 1.20894 1.01198 0.89878 1.01672 1.21439 0.83251 1.00152 1.02442 1.42853 1.09960 1.09076 1.40919 1.22760 0.92340 0.92475 1.15263 1.22603 0.97375 0.90961 1.01235 1.70714 1.15527 1.12088 1.21858 1.20766 0.88847 0.88415 1.04664 1.20570 0.92870 0.94173 0.96298 1.22888 0.97926 0.81081 1.01306 0.93441 0.78042 0.91319 0.91973 0.91541 0.90958 0.89750 0.91077 0.82409 0.81408 0.79866 0.80036 0.82224 0.91728 0.88938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 2 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 3 Si 0.91 22.59 29.55 -169.99 -5.02 17.57 16 4 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.72 9.93 -15.06 -0.15 -6.87 16 8 H 0.07 1.97 7.83 -52.49 -0.41 1.56 16 9 N -0.72 -17.46 5.12 -53.31 -0.27 -17.73 16 10 C 0.17 3.23 2.92 -67.81 -0.20 3.03 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.13 -1.88 5.35 -26.69 -0.14 -2.03 16 13 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 14 C 0.10 1.02 5.39 -3.71 -0.02 1.00 16 15 N -0.60 -8.61 2.97 -173.95 -0.52 -9.12 16 16 C 0.56 8.62 7.25 -12.41 -0.09 8.53 16 17 O -0.53 -10.44 16.47 5.30 0.09 -10.36 16 18 C -0.11 -1.27 5.02 -104.63 -0.52 -1.80 16 19 C -0.12 -0.95 7.32 -39.54 -0.29 -1.24 16 20 C 0.05 0.34 10.91 -16.68 -0.18 0.16 16 21 N -0.36 -3.39 2.94 -62.75 -0.18 -3.58 16 22 C -0.10 -0.74 11.74 -16.50 -0.19 -0.93 16 23 C 0.03 0.29 11.83 -17.96 -0.21 0.08 16 24 N -0.48 -6.29 11.31 -12.80 -0.14 -6.43 16 25 C 0.21 2.67 7.79 -155.96 -1.22 1.45 16 26 C -0.02 -0.23 9.84 -38.60 -0.38 -0.61 16 27 C 0.09 1.67 6.01 -3.71 -0.02 1.65 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.39 9.86 7.80 -40.82 -0.32 9.54 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.08 0.70 4.53 -51.93 -0.24 0.47 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.16 0.94 7.09 -52.49 -0.37 0.57 16 37 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 38 H 0.18 0.68 8.06 -52.49 -0.42 0.26 16 39 H 0.18 1.07 8.06 -52.49 -0.42 0.64 16 40 H 0.16 2.07 8.06 -52.49 -0.42 1.64 16 41 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.98 7.02 -51.93 -0.36 1.62 16 LS Contribution 347.38 15.07 5.23 5.23 Total: -1.00 -34.96 347.38 -9.46 -44.41 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -5.48 Total: 6.65 kcal Atomic # 6 Polarization: 4.29 SS G_CDS: -3.88 Total: 0.41 kcal Atomic # 7 Polarization: -63.53 SS G_CDS: -0.39 Total: -63.92 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -34.96 -9.46 -44.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999687352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.966 kcal (2) G-P(sol) polarization free energy of solvation -34.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds