Wall clock time and date at job start Fri Apr 10 2020 23:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86804 * 119.99731 * 2 1 4 4 H 1.48500 * 109.47107 * 270.27913 * 3 2 1 5 5 H 1.48498 * 109.47098 * 30.27920 * 3 2 1 6 6 H 1.48498 * 109.46900 * 150.27990 * 3 2 1 7 7 C 1.38808 * 120.00013 * 180.28399 * 2 1 3 8 8 H 1.08000 * 119.99946 * 179.72115 * 7 2 1 9 9 N 1.36935 * 119.99995 * 359.71631 * 7 2 1 10 10 C 1.46506 * 120.00066 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.49299 * 34.93935 * 10 9 7 12 12 C 1.53036 * 109.49906 * 154.99857 * 10 9 7 13 13 C 1.53038 * 109.54123 * 181.31706 * 12 10 9 14 14 C 1.53191 * 109.31345 * 298.64147 * 13 12 10 15 15 N 1.46922 * 108.77701 * 54.63071 * 14 13 12 16 16 C 1.34777 * 120.63432 * 126.41526 * 15 14 13 17 17 O 1.21574 * 120.00523 * 176.20409 * 16 15 14 18 18 C 1.47657 * 119.99332 * 356.20768 * 16 15 14 19 19 C 1.41770 * 120.37514 * 50.48896 * 18 16 15 20 20 C 1.34546 * 120.14761 * 180.02562 * 19 18 16 21 21 N 1.36720 * 120.95563 * 359.97438 * 20 19 18 22 22 C 1.36431 * 132.26670 * 180.02562 * 21 20 19 23 23 C 1.35456 * 107.22056 * 179.97438 * 22 21 20 24 24 N 1.33184 * 108.62139 * 359.97438 * 23 22 21 25 25 C 1.32657 * 109.12414 * 0.02562 * 24 23 22 26 26 C 1.38438 * 120.36764 * 230.21194 * 18 16 15 27 27 C 1.46929 * 118.73942 * 306.38977 * 15 14 13 28 28 H 0.96993 * 120.00132 * 359.71758 * 1 2 3 29 29 H 0.96995 * 120.00375 * 0.02562 * 9 7 2 30 30 H 1.08996 * 109.46473 * 301.34454 * 12 10 9 31 31 H 1.09005 * 109.45531 * 61.31318 * 12 10 9 32 32 H 1.09003 * 109.49652 * 58.58665 * 13 12 10 33 33 H 1.08996 * 109.50317 * 178.65301 * 13 12 10 34 34 H 1.09003 * 109.59148 * 174.42129 * 14 13 12 35 35 H 1.09005 * 109.58402 * 294.70360 * 14 13 12 36 36 H 1.08000 * 119.93219 * 359.97438 * 19 18 16 37 37 H 1.07997 * 119.52023 * 179.97438 * 20 19 18 38 38 H 1.08001 * 126.39341 * 359.95734 * 22 21 20 39 39 H 1.07995 * 125.68948 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.45655 * 359.97438 * 26 18 16 41 41 H 1.08994 * 109.58929 * 293.82341 * 27 15 14 42 42 H 1.08998 * 109.58470 * 173.39050 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0499 -1.4001 5 1 1.4506 2.6510 0.7059 6 1 3.5507 1.4385 0.6941 7 6 2.0103 -1.2021 -0.0060 8 1 3.0903 -1.2021 -0.0105 9 7 1.3256 -2.3880 -0.0060 10 6 2.0582 -3.6568 -0.0117 11 1 2.9718 -3.5519 0.5735 12 6 1.1837 -4.7542 0.5990 13 6 1.9600 -6.0729 0.6235 14 6 2.3145 -6.4789 -0.8104 15 7 3.0310 -5.3687 -1.4528 16 6 4.2315 -5.5696 -2.0316 17 8 4.7827 -4.6595 -2.6198 18 6 4.8771 -6.8951 -1.9514 19 6 4.1578 -8.0653 -2.3024 20 6 4.7504 -9.2708 -2.2270 21 7 6.0482 -9.3919 -1.8144 22 6 6.8631 -10.4744 -1.6548 23 6 8.0601 -10.0144 -1.2183 24 7 7.9925 -8.6887 -1.1104 25 6 6.7801 -8.2849 -1.4666 26 6 6.1935 -7.0086 -1.5380 27 6 2.4137 -4.0354 -1.4529 28 1 -0.4850 0.8400 0.0041 29 1 0.3557 -2.3881 -0.0022 30 1 0.9088 -4.4757 1.6162 31 1 0.2815 -4.8753 -0.0007 32 1 2.8748 -5.9457 1.2023 33 1 1.3453 -6.8485 1.0803 34 1 2.9513 -7.3634 -0.7930 35 1 1.4016 -6.6968 -1.3648 36 1 3.1316 -7.9890 -2.6301 37 1 4.1929 -10.1556 -2.4965 38 1 6.6025 -11.5058 -1.8413 39 1 8.9250 -10.6214 -0.9951 40 1 6.7610 -6.1294 -1.2708 41 1 1.5089 -4.0516 -2.0603 42 1 3.1161 -3.3076 -1.8591 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999687352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:39 Heat of formation + Delta-G solvation = 56.217436 kcal Electronic energy + Delta-G solvation = -25661.041336 eV Core-core repulsion = 22028.049184 eV Total energy + Delta-G solvation = -3632.992152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.82482 -41.42314 -38.88907 -38.03702 -36.23901 -34.73138 -33.89447 -32.77146 -31.51132 -30.31149 -29.66276 -26.96035 -25.93205 -24.93358 -24.12255 -23.25493 -22.77813 -21.73966 -20.30347 -19.15364 -18.94824 -18.74480 -17.38551 -17.32718 -16.96302 -16.70083 -16.14971 -15.81229 -15.61845 -15.43648 -15.43118 -15.12914 -14.93646 -14.50034 -14.18194 -13.95894 -13.93562 -13.72341 -13.17155 -13.03464 -12.92845 -12.82142 -12.51416 -12.24030 -12.16388 -11.93602 -11.90176 -11.69901 -11.36475 -11.21439 -11.15001 -11.00079 -9.86657 -9.82064 -9.04391 -8.88276 -8.00425 -5.29366 -0.51816 0.07918 1.41782 1.44194 1.45406 1.53086 1.61375 1.80893 1.96798 2.41702 2.51961 3.09849 3.32727 3.40652 3.51710 3.71443 3.76003 3.97442 3.99410 4.04903 4.18421 4.30982 4.36232 4.38033 4.46132 4.54012 4.59779 4.64372 4.73546 4.84864 4.86134 4.89612 4.98404 5.03330 5.13679 5.35217 5.37292 5.42405 5.44833 5.54101 5.61054 6.03970 6.22653 6.32947 6.83012 6.98285 7.29619 8.01447 8.27014 9.22076 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023697 B = 0.002965 C = 0.002782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1181.280189 B = 9442.004275 C =10062.500633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.066 4.066 3 Si 0.966 3.034 4 H -0.289 1.289 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.246 4.246 8 H 0.063 0.937 9 N -0.728 5.728 10 C 0.166 3.834 11 H 0.028 0.972 12 C -0.118 4.118 13 C -0.123 4.123 14 C 0.093 3.907 15 N -0.591 5.591 16 C 0.554 3.446 17 O -0.586 6.586 18 C -0.103 4.103 19 C -0.127 4.127 20 C 0.074 3.926 21 N -0.360 5.360 22 C -0.069 4.069 23 C 0.009 3.991 24 N -0.527 5.527 25 C 0.186 3.814 26 C -0.044 4.044 27 C 0.107 3.893 28 H 0.253 0.747 29 H 0.379 0.621 30 H 0.059 0.941 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.114 0.886 34 H 0.115 0.885 35 H 0.102 0.898 36 H 0.189 0.811 37 H 0.225 0.775 38 H 0.234 0.766 39 H 0.208 0.792 40 H 0.134 0.866 41 H 0.068 0.932 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.635 -30.622 -2.933 31.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.612 5.612 2 C -0.259 4.259 3 Si 0.795 3.205 4 H -0.216 1.216 5 H -0.215 1.215 6 H -0.200 1.200 7 C -0.378 4.378 8 H 0.081 0.919 9 N -0.368 5.368 10 C 0.056 3.944 11 H 0.046 0.954 12 C -0.156 4.156 13 C -0.161 4.161 14 C -0.028 4.028 15 N -0.322 5.322 16 C 0.343 3.657 17 O -0.466 6.466 18 C -0.113 4.113 19 C -0.147 4.147 20 C -0.046 4.046 21 N -0.032 5.032 22 C -0.201 4.201 23 C -0.143 4.143 24 N -0.248 5.248 25 C -0.056 4.056 26 C -0.065 4.065 27 C -0.018 4.018 28 H 0.062 0.938 29 H 0.212 0.788 30 H 0.078 0.922 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.120 0.880 36 H 0.206 0.794 37 H 0.241 0.759 38 H 0.250 0.750 39 H 0.225 0.775 40 H 0.152 0.848 41 H 0.086 0.914 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 6.652 -29.547 -2.954 30.430 hybrid contribution -0.228 1.524 -0.247 1.561 sum 6.423 -28.023 -3.201 28.927 Atomic orbital electron populations 1.69778 1.06221 1.26194 1.59024 1.25452 0.96390 1.00688 1.03354 0.85261 0.77777 0.80047 0.77434 1.21578 1.21459 1.20017 1.19495 0.90992 0.85536 1.41734 0.91853 1.42489 1.05562 1.00514 1.88252 1.20661 0.94666 0.86220 0.92819 0.95428 1.21741 0.98600 0.94268 1.00989 1.21885 1.00642 0.97031 0.96567 1.22445 0.98350 0.88544 0.93420 1.48207 1.18462 1.10982 1.54577 1.18584 0.80928 0.87745 0.78467 1.90810 1.65049 1.45809 1.44969 1.19720 0.94019 0.93674 1.03855 1.21143 1.02424 0.88650 1.02498 1.22283 0.81945 1.01452 0.98892 1.43146 1.10905 1.08584 1.40549 1.23558 0.91005 0.93678 1.11885 1.23247 0.99450 0.89934 1.01663 1.70637 1.16606 1.14476 1.23110 1.20556 0.89486 0.88984 1.06543 1.20370 0.93425 0.94229 0.98493 1.22302 0.96960 0.82601 0.99972 0.93777 0.78850 0.92173 0.90837 0.92644 0.86779 0.86696 0.88012 0.79384 0.75884 0.74983 0.77526 0.84843 0.91365 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.74 13.06 21.65 0.28 -58.45 16 2 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 3 Si 0.97 47.73 29.55 68.60 2.03 49.75 16 4 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 5 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 6 H -0.27 -13.17 7.11 99.48 0.71 -12.46 16 7 C -0.25 -14.11 9.93 84.03 0.83 -13.27 16 8 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 9 N -0.73 -36.79 5.12 -322.57 -1.65 -38.45 16 10 C 0.17 6.59 2.92 45.07 0.13 6.72 16 11 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 12 C -0.12 -3.38 5.35 30.62 0.16 -3.21 16 13 C -0.12 -2.38 6.08 30.67 0.19 -2.20 16 14 C 0.09 1.60 5.39 86.36 0.47 2.07 16 15 N -0.59 -16.95 2.97 -822.53 -2.44 -19.40 16 16 C 0.55 17.74 7.25 86.73 0.63 18.37 16 17 O -0.59 -25.15 16.47 -3.95 -0.07 -25.22 16 18 C -0.10 -2.44 5.02 -19.87 -0.10 -2.54 16 19 C -0.13 -1.59 7.32 22.30 0.16 -1.43 16 20 C 0.07 0.64 10.91 83.09 0.91 1.54 16 21 N -0.36 -5.51 2.94 -352.43 -1.04 -6.54 16 22 C -0.07 -0.75 11.74 83.33 0.98 0.23 16 23 C 0.01 0.14 11.83 83.84 0.99 1.14 16 24 N -0.53 -13.73 11.31 -194.40 -2.20 -15.93 16 25 C 0.19 4.53 7.79 133.97 1.04 5.58 16 26 C -0.04 -1.17 9.84 22.91 0.23 -0.95 16 27 C 0.11 4.05 6.01 86.36 0.52 4.56 16 28 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 29 H 0.38 19.95 7.80 -92.71 -0.72 19.23 16 30 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.12 1.38 4.53 -2.39 -0.01 1.37 16 35 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 36 H 0.19 1.19 7.09 -2.91 -0.02 1.17 16 37 H 0.22 -0.54 8.06 -2.91 -0.02 -0.57 16 38 H 0.23 0.06 8.06 -2.91 -0.02 0.04 16 39 H 0.21 1.91 8.06 -2.91 -0.02 1.89 16 40 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 41 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 42 H 0.05 2.24 7.02 -2.39 -0.02 2.22 16 Total: -1.00 -84.62 347.38 2.84 -81.78 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 0.33 Total: 19.22 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 7.61 Total: 13.23 kcal Atomic # 7 Polarization: -131.72 SS G_CDS: -7.05 Total: -138.77 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -0.07 Total: -25.22 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -84.62 2.84 -81.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999687352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.997 kcal (2) G-P(sol) polarization free energy of solvation -84.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds