Wall clock time and date at job start Fri Apr 10 2020 23:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99667 * 2 1 4 4 H 1.48493 * 109.46846 * 269.99960 * 3 2 1 5 5 H 1.48503 * 109.46918 * 29.99660 * 3 2 1 6 6 H 1.48501 * 109.46919 * 149.99790 * 3 2 1 7 7 C 1.38808 * 120.00611 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99835 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00464 * 180.02562 * 7 2 1 10 10 C 1.46494 * 120.00178 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.49933 * 325.06219 * 10 9 7 12 12 C 1.53048 * 109.49762 * 204.99834 * 10 9 7 13 13 C 1.53040 * 109.53876 * 178.64820 * 12 10 9 14 14 C 1.53198 * 109.33795 * 61.34860 * 13 12 10 15 15 N 1.46930 * 108.77180 * 305.41587 * 14 13 12 16 16 C 1.34775 * 120.60382 * 233.57417 * 15 14 13 17 17 O 1.21760 * 120.00230 * 172.55947 * 16 15 14 18 18 C 1.46304 * 119.99907 * 352.56002 * 16 15 14 19 19 N 1.32507 * 125.56446 * 353.09589 * 18 16 15 20 20 C 1.32021 * 109.86578 * 179.88171 * 19 18 16 21 21 C 1.39362 * 107.93316 * 0.37989 * 20 19 18 22 22 C 1.40422 * 133.41425 * 179.81295 * 21 20 19 23 23 C 1.36328 * 119.18973 * 179.97438 * 22 21 20 24 24 C 1.40322 * 119.58344 * 359.97438 * 23 22 21 25 25 C 1.35160 * 120.40276 * 0.02562 * 24 23 22 26 26 N 1.36189 * 120.59667 * 359.97438 * 25 24 23 27 27 C 1.46922 * 118.76655 * 53.55330 * 15 14 13 28 28 H 0.96996 * 120.00580 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99781 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.45497 * 58.63251 * 12 10 9 31 31 H 1.08995 * 109.45675 * 298.67373 * 12 10 9 32 32 H 1.09000 * 109.49692 * 181.31727 * 13 12 10 33 33 H 1.09001 * 109.49865 * 301.38213 * 13 12 10 34 34 H 1.08997 * 109.58163 * 65.17030 * 14 13 12 35 35 H 1.08997 * 109.58768 * 185.59267 * 14 13 12 36 36 H 1.07999 * 126.03078 * 180.13079 * 20 19 18 37 37 H 1.08003 * 120.40352 * 359.97021 * 22 21 20 38 38 H 1.07998 * 120.20764 * 180.02562 * 23 22 21 39 39 H 1.08007 * 119.79801 * 179.97438 * 24 23 22 40 40 H 1.07994 * 119.70646 * 179.97438 * 25 24 23 41 41 H 1.08998 * 109.58607 * 186.62074 * 27 15 14 42 42 H 1.09000 * 109.70462 * 66.26864 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1123 -2.4706 0.0011 11 1 3.5645 -3.2071 0.5891 12 6 5.4998 -2.2593 0.6113 13 6 6.2534 -3.5909 0.6427 14 6 6.4284 -4.1086 -0.7885 15 7 5.1090 -4.1761 -1.4315 16 6 4.6827 -5.3190 -2.0046 17 8 3.5391 -5.4053 -2.4137 18 6 5.5940 -6.4561 -2.1353 19 7 6.8879 -6.4435 -1.8497 20 6 7.4094 -7.6346 -2.0783 21 6 6.3934 -8.4650 -2.5477 22 6 6.3546 -9.8097 -2.9503 23 6 5.1727 -10.3445 -3.3694 24 6 4.0196 -9.5452 -3.3907 25 6 4.0758 -8.2527 -2.9994 26 7 5.2502 -7.7063 -2.5786 27 6 4.2631 -2.9749 -1.4376 28 1 -0.4851 0.8400 -0.0004 29 1 3.8647 -0.3619 0.0014 30 1 5.3954 -1.8772 1.6268 31 1 6.0560 -1.5413 0.0087 32 1 7.2325 -3.4442 1.0988 33 1 5.6858 -4.3166 1.2252 34 1 7.0721 -3.4289 -1.3467 35 1 6.8755 -5.1024 -0.7655 36 1 8.4421 -7.9147 -1.9316 37 1 7.2503 -10.4128 -2.9282 38 1 5.1241 -11.3770 -3.6823 39 1 3.0815 -9.9652 -3.7225 40 1 3.1815 -7.6477 -3.0207 41 1 3.2818 -3.2210 -1.8433 42 1 4.7277 -2.2013 -2.0490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999696565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:42 Heat of formation + Delta-G solvation = 85.908505 kcal Electronic energy + Delta-G solvation = -25908.193734 eV Core-core repulsion = 22276.489084 eV Total energy + Delta-G solvation = -3631.704651 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.15905 -39.74138 -37.78994 -37.31704 -34.60482 -33.64414 -32.34512 -31.38916 -31.16295 -29.26931 -28.20567 -25.55924 -24.36113 -23.73116 -23.11169 -22.46717 -21.59407 -20.58788 -19.40235 -17.52745 -17.49845 -17.18830 -16.73721 -16.40276 -15.87283 -15.56584 -14.99738 -14.83038 -14.64263 -14.33220 -14.05064 -13.87468 -13.57178 -13.04709 -12.72241 -12.63940 -12.55615 -12.44228 -12.26194 -12.09638 -11.69588 -11.19758 -11.10209 -10.91137 -10.87039 -10.62796 -10.25804 -10.12742 -9.85358 -9.77701 -9.58109 -9.45985 -9.09015 -8.40673 -7.77950 -7.27142 -5.75522 -3.12651 0.44774 0.60640 2.07031 2.16715 3.05392 3.26565 3.38931 3.39485 3.41364 3.46629 4.12091 4.14303 4.36783 4.51788 4.56784 4.59795 4.68361 4.99806 5.07302 5.24140 5.31455 5.34441 5.43836 5.48716 5.58333 5.64495 5.78166 5.79535 5.83631 5.95005 6.00740 6.12391 6.16133 6.18517 6.31940 6.41701 6.46452 6.68630 6.75567 6.80210 6.97180 7.35683 7.63365 8.00727 8.24587 8.43410 9.20724 9.92424 10.11418 11.42540 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023758 B = 0.003229 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.250475 B = 8669.215571 C = 9607.771727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.092 0.908 9 N -0.742 5.742 10 C 0.174 3.826 11 H 0.059 0.941 12 C -0.130 4.130 13 C -0.128 4.128 14 C 0.075 3.925 15 N -0.579 5.579 16 C 0.600 3.400 17 O -0.546 6.546 18 C 0.100 3.900 19 N -0.401 5.401 20 C -0.017 4.017 21 C 0.018 3.982 22 C -0.084 4.084 23 C -0.111 4.111 24 C -0.136 4.136 25 C 0.068 3.932 26 N -0.320 5.320 27 C 0.094 3.906 28 H 0.260 0.740 29 H 0.363 0.637 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.072 0.928 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.136 0.864 36 H 0.189 0.811 37 H 0.150 0.850 38 H 0.141 0.859 39 H 0.153 0.847 40 H 0.180 0.820 41 H 0.096 0.904 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.627 -21.381 -5.357 28.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.189 4.189 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.202 1.202 7 C -0.377 4.377 8 H 0.109 0.891 9 N -0.384 5.384 10 C 0.063 3.937 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.167 4.167 14 C -0.047 4.047 15 N -0.310 5.310 16 C 0.386 3.614 17 O -0.424 6.424 18 C -0.150 4.150 19 N -0.118 5.118 20 C -0.178 4.178 21 C -0.094 4.094 22 C -0.103 4.103 23 C -0.132 4.132 24 C -0.157 4.157 25 C -0.055 4.055 26 N 0.011 4.989 27 C -0.030 4.030 28 H 0.070 0.930 29 H 0.196 0.804 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.153 0.847 36 H 0.206 0.794 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.197 0.803 41 H 0.114 0.886 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 16.999 -20.543 -5.240 27.174 hybrid contribution 0.137 0.608 -0.364 0.721 sum 17.136 -19.936 -5.604 26.879 Atomic orbital electron populations 1.69705 1.05123 1.25841 1.57233 1.24680 0.95226 0.97198 1.01836 0.86555 0.79240 0.84980 0.77799 1.21044 1.21725 1.20239 1.19111 0.80412 0.94861 1.43292 0.89063 1.42732 1.04122 1.01755 1.89804 1.20449 0.91151 0.89427 0.92639 0.92247 1.21891 0.96598 0.96818 1.01586 1.21879 1.00529 0.97596 0.96697 1.22727 0.83422 1.06242 0.92310 1.47848 1.18907 1.10395 1.53898 1.16243 0.85022 0.81018 0.79141 1.90848 1.18012 1.82157 1.51428 1.22533 0.92097 0.86326 1.13996 1.69745 1.04488 1.22259 1.15286 1.22824 0.99229 0.88554 1.07201 1.20013 0.87641 0.93822 1.07934 1.20554 0.99650 0.91189 0.98953 1.21188 0.92048 1.00709 0.99299 1.20999 1.00544 0.92248 1.01900 1.22162 0.89094 0.95860 0.98361 1.42397 1.08312 1.09962 1.38200 1.22785 0.95492 0.83819 1.00947 0.93025 0.80434 0.91490 0.92171 0.90952 0.91821 0.91816 0.84677 0.79433 0.83187 0.84161 0.82897 0.80255 0.88607 0.91756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.68 13.97 55.49 0.78 -28.91 16 2 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 3 Si 0.88 22.24 27.74 -169.99 -4.71 17.52 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.28 -6.49 6.52 56.52 0.37 -6.13 16 7 C -0.25 -7.08 10.41 -15.06 -0.16 -7.24 16 8 H 0.09 2.85 8.06 -52.48 -0.42 2.42 16 9 N -0.74 -17.76 4.93 -53.31 -0.26 -18.02 16 10 C 0.17 3.48 2.92 -67.81 -0.20 3.28 16 11 H 0.06 1.29 8.08 -51.93 -0.42 0.87 16 12 C -0.13 -2.07 5.36 -26.69 -0.14 -2.21 16 13 C -0.13 -1.70 6.08 -26.61 -0.16 -1.86 16 14 C 0.08 1.04 6.06 -3.71 -0.02 1.02 16 15 N -0.58 -9.80 2.97 -174.44 -0.52 -10.32 16 16 C 0.60 10.63 7.64 -13.02 -0.10 10.53 16 17 O -0.55 -11.10 14.79 5.14 0.08 -11.02 16 18 C 0.10 1.50 7.54 -153.91 -1.16 0.34 16 19 N -0.40 -5.27 7.53 -10.62 -0.08 -5.35 16 20 C -0.02 -0.18 12.00 -17.05 -0.20 -0.38 16 21 C 0.02 0.18 6.80 -84.21 -0.57 -0.39 16 22 C -0.08 -0.59 10.11 -39.45 -0.40 -0.99 16 23 C -0.11 -0.70 10.08 -39.49 -0.40 -1.10 16 24 C -0.14 -1.05 9.98 -39.89 -0.40 -1.45 16 25 C 0.07 0.76 10.52 -16.71 -0.18 0.58 16 26 N -0.32 -4.16 2.95 -58.89 -0.17 -4.33 16 27 C 0.09 1.81 6.03 -3.71 -0.02 1.79 16 28 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 29 H 0.36 8.43 5.66 -40.82 -0.23 8.20 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.14 1.80 4.14 -64.45 -0.27 1.54 16 36 H 0.19 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.15 0.56 8.06 -52.48 -0.42 0.14 16 38 H 0.14 0.46 8.06 -52.49 -0.42 0.04 16 39 H 0.15 0.75 8.06 -52.48 -0.42 0.32 16 40 H 0.18 2.16 6.79 -52.49 -0.36 1.81 16 41 H 0.10 2.15 7.00 -51.93 -0.36 1.78 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 341.76 15.07 5.15 5.15 Total: -1.00 -35.15 341.76 -9.41 -44.56 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -5.46 Total: 8.71 kcal Atomic # 6 Polarization: 6.22 SS G_CDS: -4.21 Total: 2.01 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: -0.26 Total: -66.93 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -4.71 Total: 17.52 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.15 -9.41 -44.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999696565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.467 kcal (2) G-P(sol) polarization free energy of solvation -35.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds