Wall clock time and date at job start Fri Apr 10 2020 23:00:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86807 * 119.99667 * 2 1 4 4 H 1.48493 * 109.46846 * 269.99960 * 3 2 1 5 5 H 1.48503 * 109.46918 * 29.99660 * 3 2 1 6 6 H 1.48501 * 109.46919 * 149.99790 * 3 2 1 7 7 C 1.38808 * 120.00611 * 179.97438 * 2 1 3 8 8 H 1.08011 * 119.99835 * 0.02562 * 7 2 1 9 9 N 1.36936 * 120.00464 * 180.02562 * 7 2 1 10 10 C 1.46494 * 120.00178 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.49933 * 325.06219 * 10 9 7 12 12 C 1.53048 * 109.49762 * 204.99834 * 10 9 7 13 13 C 1.53040 * 109.53876 * 178.64820 * 12 10 9 14 14 C 1.53198 * 109.33795 * 61.34860 * 13 12 10 15 15 N 1.46930 * 108.77180 * 305.41587 * 14 13 12 16 16 C 1.34775 * 120.60382 * 233.57417 * 15 14 13 17 17 O 1.21760 * 120.00230 * 172.55947 * 16 15 14 18 18 C 1.46304 * 119.99907 * 352.56002 * 16 15 14 19 19 N 1.32507 * 125.56446 * 353.09589 * 18 16 15 20 20 C 1.32021 * 109.86578 * 179.88171 * 19 18 16 21 21 C 1.39362 * 107.93316 * 0.37989 * 20 19 18 22 22 C 1.40422 * 133.41425 * 179.81295 * 21 20 19 23 23 C 1.36328 * 119.18973 * 179.97438 * 22 21 20 24 24 C 1.40322 * 119.58344 * 359.97438 * 23 22 21 25 25 C 1.35160 * 120.40276 * 0.02562 * 24 23 22 26 26 N 1.36189 * 120.59667 * 359.97438 * 25 24 23 27 27 C 1.46922 * 118.76655 * 53.55330 * 15 14 13 28 28 H 0.96996 * 120.00580 * 0.02562 * 1 2 3 29 29 H 0.96998 * 119.99781 * 0.02562 * 9 7 2 30 30 H 1.09000 * 109.45497 * 58.63251 * 12 10 9 31 31 H 1.08995 * 109.45675 * 298.67373 * 12 10 9 32 32 H 1.09000 * 109.49692 * 181.31727 * 13 12 10 33 33 H 1.09001 * 109.49865 * 301.38213 * 13 12 10 34 34 H 1.08997 * 109.58163 * 65.17030 * 14 13 12 35 35 H 1.08997 * 109.58768 * 185.59267 * 14 13 12 36 36 H 1.07999 * 126.03078 * 180.13079 * 20 19 18 37 37 H 1.08003 * 120.40352 * 359.97021 * 22 21 20 38 38 H 1.07998 * 120.20764 * 180.02562 * 23 22 21 39 39 H 1.08007 * 119.79801 * 179.97438 * 24 23 22 40 40 H 1.07994 * 119.70646 * 179.97438 * 25 24 23 41 41 H 1.08998 * 109.58607 * 186.62074 * 27 15 14 42 42 H 1.09000 * 109.70462 * 66.26864 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6179 0.0000 4 1 2.4976 2.0465 -1.4000 5 1 1.4474 2.6527 0.7000 6 1 3.5477 1.4403 0.7001 7 6 2.0104 -1.2020 0.0005 8 1 1.4704 -2.1375 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1123 -2.4706 0.0011 11 1 3.5645 -3.2071 0.5891 12 6 5.4998 -2.2593 0.6113 13 6 6.2534 -3.5909 0.6427 14 6 6.4284 -4.1086 -0.7885 15 7 5.1090 -4.1761 -1.4315 16 6 4.6827 -5.3190 -2.0046 17 8 3.5391 -5.4053 -2.4137 18 6 5.5940 -6.4561 -2.1353 19 7 6.8879 -6.4435 -1.8497 20 6 7.4094 -7.6346 -2.0783 21 6 6.3934 -8.4650 -2.5477 22 6 6.3546 -9.8097 -2.9503 23 6 5.1727 -10.3445 -3.3694 24 6 4.0196 -9.5452 -3.3907 25 6 4.0758 -8.2527 -2.9994 26 7 5.2502 -7.7063 -2.5786 27 6 4.2631 -2.9749 -1.4376 28 1 -0.4851 0.8400 -0.0004 29 1 3.8647 -0.3619 0.0014 30 1 5.3954 -1.8772 1.6268 31 1 6.0560 -1.5413 0.0087 32 1 7.2325 -3.4442 1.0988 33 1 5.6858 -4.3166 1.2252 34 1 7.0721 -3.4289 -1.3467 35 1 6.8755 -5.1024 -0.7655 36 1 8.4421 -7.9147 -1.9316 37 1 7.2503 -10.4128 -2.9282 38 1 5.1241 -11.3770 -3.6823 39 1 3.0815 -9.9652 -3.7225 40 1 3.1815 -7.6477 -3.0207 41 1 3.2818 -3.2210 -1.8433 42 1 4.7277 -2.2013 -2.0490 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999696565.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:41 Heat of formation + Delta-G solvation = 62.657126 kcal Electronic energy + Delta-G solvation = -25909.201990 eV Core-core repulsion = 22276.489084 eV Total energy + Delta-G solvation = -3632.712906 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.00021 -41.06720 -38.78249 -38.56984 -36.35653 -34.42751 -34.04641 -32.96471 -32.16419 -30.70687 -29.35949 -26.78279 -25.73630 -24.95306 -24.20417 -23.35355 -23.02898 -21.99124 -20.71088 -19.59332 -18.58425 -18.11896 -17.62681 -17.38869 -16.97725 -16.63047 -16.38459 -16.17338 -15.83464 -15.61328 -15.40055 -15.17055 -14.96900 -14.66196 -14.26877 -14.01879 -13.88724 -13.45448 -13.22869 -13.09197 -12.98999 -12.72272 -12.61496 -12.26063 -12.08629 -11.94616 -11.85569 -11.79700 -11.45407 -11.42519 -11.14240 -10.70894 -10.38492 -9.92596 -9.33176 -8.57964 -8.06633 -5.43360 -0.26861 -0.20376 1.15578 1.19837 1.35840 1.41266 1.48382 2.09245 2.22810 2.42619 2.45602 3.12304 3.23728 3.42512 3.49523 3.61970 3.74974 3.90097 3.93946 4.04467 4.11431 4.18056 4.30608 4.31774 4.35779 4.65030 4.67849 4.70669 4.81159 4.82690 4.98965 5.04017 5.08172 5.11810 5.19769 5.30414 5.37251 5.41166 5.52489 5.68703 5.75787 5.88375 6.16709 6.24166 6.56030 6.95836 7.02002 7.73589 7.97325 9.15157 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.023758 B = 0.003229 C = 0.002914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.250475 B = 8669.215571 C = 9607.771727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.063 4.063 3 Si 0.964 3.036 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.244 1.244 7 C -0.240 4.240 8 H 0.044 0.956 9 N -0.742 5.742 10 C 0.172 3.828 11 H 0.028 0.972 12 C -0.121 4.121 13 C -0.119 4.119 14 C 0.075 3.925 15 N -0.583 5.583 16 C 0.591 3.409 17 O -0.595 6.595 18 C 0.037 3.963 19 N -0.405 5.405 20 C -0.012 4.012 21 C 0.015 3.985 22 C -0.073 4.073 23 C -0.104 4.104 24 C -0.105 4.105 25 C 0.013 3.987 26 N -0.321 5.321 27 C 0.107 3.893 28 H 0.260 0.740 29 H 0.371 0.629 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.147 0.853 36 H 0.231 0.769 37 H 0.196 0.804 38 H 0.186 0.814 39 H 0.182 0.818 40 H 0.152 0.848 41 H 0.048 0.952 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.413 -23.663 -5.606 33.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.634 5.634 2 C -0.255 4.255 3 Si 0.789 3.211 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.168 1.168 7 C -0.371 4.371 8 H 0.062 0.938 9 N -0.385 5.385 10 C 0.063 3.937 11 H 0.046 0.954 12 C -0.159 4.159 13 C -0.158 4.158 14 C -0.046 4.046 15 N -0.314 5.314 16 C 0.380 3.620 17 O -0.477 6.477 18 C -0.207 4.207 19 N -0.122 5.122 20 C -0.175 4.175 21 C -0.098 4.098 22 C -0.092 4.092 23 C -0.125 4.125 24 C -0.126 4.126 25 C -0.110 4.110 26 N 0.011 4.989 27 C -0.019 4.019 28 H 0.068 0.932 29 H 0.206 0.794 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.163 0.837 36 H 0.247 0.753 37 H 0.213 0.787 38 H 0.203 0.797 39 H 0.199 0.801 40 H 0.169 0.831 41 H 0.067 0.933 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 21.837 -22.826 -5.472 32.059 hybrid contribution -1.365 0.890 -0.391 1.675 sum 20.472 -21.936 -5.863 30.573 Atomic orbital electron populations 1.69913 1.07424 1.26956 1.59141 1.25620 0.96216 1.01683 1.01962 0.85294 0.78836 0.78685 0.78246 1.20324 1.21992 1.16776 1.18956 0.82648 0.93201 1.42267 0.93836 1.42621 1.02374 1.03571 1.89939 1.20580 0.93193 0.87118 0.92817 0.95370 1.21817 0.93649 0.98919 1.01504 1.21875 1.01936 0.95559 0.96417 1.22975 0.81768 1.07408 0.92449 1.47865 1.19668 1.09431 1.54388 1.16710 0.85012 0.81975 0.78297 1.90798 1.20243 1.83181 1.53500 1.21711 0.92562 0.86726 1.19683 1.69575 1.03483 1.23812 1.15365 1.23624 1.00822 0.87317 1.05736 1.20769 0.86707 0.95151 1.07190 1.21205 1.01713 0.89594 0.96730 1.21755 0.90770 1.02359 0.97665 1.21518 1.02675 0.90439 0.97928 1.22178 0.88600 0.97511 1.02698 1.42478 1.09400 1.09671 1.37342 1.22301 0.94087 0.85302 1.00171 0.93158 0.79428 0.91076 0.90314 0.86893 0.92950 0.90317 0.83676 0.75260 0.78715 0.79697 0.80078 0.83087 0.93289 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -65.85 13.97 21.65 0.30 -65.55 16 2 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 3 Si 0.96 46.55 27.74 68.60 1.90 48.45 16 4 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 5 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 6 H -0.24 -10.37 6.52 99.48 0.65 -9.73 16 7 C -0.24 -14.59 10.41 84.03 0.88 -13.71 16 8 H 0.04 2.99 8.06 -2.91 -0.02 2.97 16 9 N -0.74 -36.51 4.93 -322.57 -1.59 -38.10 16 10 C 0.17 7.22 2.92 45.07 0.13 7.36 16 11 H 0.03 1.34 8.08 -2.39 -0.02 1.32 16 12 C -0.12 -3.68 5.36 30.62 0.16 -3.52 16 13 C -0.12 -2.97 6.08 30.67 0.19 -2.78 16 14 C 0.07 2.02 6.06 86.36 0.52 2.54 16 15 N -0.58 -21.03 2.97 -824.00 -2.45 -23.48 16 16 C 0.59 23.08 7.64 86.34 0.66 23.74 16 17 O -0.60 -27.55 14.79 -4.54 -0.07 -27.62 16 18 C 0.04 1.18 7.54 135.57 1.02 2.20 16 19 N -0.41 -10.33 7.53 -187.52 -1.41 -11.74 16 20 C -0.01 -0.21 12.00 84.94 1.02 0.81 16 21 C 0.01 0.27 6.80 39.10 0.27 0.54 16 22 C -0.07 -0.67 10.11 22.36 0.23 -0.44 16 23 C -0.10 -0.80 10.08 22.33 0.23 -0.58 16 24 C -0.11 -1.39 9.98 22.07 0.22 -1.17 16 25 C 0.01 0.31 10.52 83.31 0.88 1.18 16 26 N -0.32 -8.50 2.95 -340.22 -1.00 -9.51 16 27 C 0.11 4.44 6.03 86.36 0.52 4.96 16 28 H 0.26 16.39 8.31 -92.71 -0.77 15.62 16 29 H 0.37 16.91 5.66 -92.71 -0.52 16.39 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.11 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.15 3.75 4.14 -27.11 -0.11 3.63 16 36 H 0.23 1.79 8.06 -2.91 -0.02 1.76 16 37 H 0.20 0.06 8.06 -2.91 -0.02 0.04 16 38 H 0.19 -0.10 8.06 -2.91 -0.02 -0.12 16 39 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.15 4.31 6.79 -2.91 -0.02 4.29 16 41 H 0.05 2.47 7.00 -2.39 -0.02 2.45 16 42 H 0.07 2.87 8.14 -2.39 -0.02 2.85 16 Total: -1.00 -86.97 341.76 3.43 -83.54 By element: Atomic # 1 Polarization: 25.95 SS G_CDS: 0.36 Total: 26.32 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 7.38 Total: 17.68 kcal Atomic # 7 Polarization: -142.22 SS G_CDS: -6.15 Total: -148.37 kcal Atomic # 8 Polarization: -27.55 SS G_CDS: -0.07 Total: -27.62 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.90 Total: 48.45 kcal Total: -86.97 3.43 -83.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999696565.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.194 kcal (2) G-P(sol) polarization free energy of solvation -86.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds