Wall clock time and date at job start Fri Apr 10 2020 23:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 119.99938 * 2 1 4 4 H 1.48503 * 109.47208 * 180.27587 * 3 2 1 5 5 H 1.48503 * 109.47050 * 300.27046 * 3 2 1 6 6 H 1.48493 * 109.47391 * 60.27234 * 3 2 1 7 7 C 1.38815 * 119.99754 * 180.27349 * 2 1 3 8 8 H 1.08003 * 119.99706 * 179.72635 * 7 2 1 9 9 N 1.36933 * 120.00187 * 359.72426 * 7 2 1 10 10 C 1.46497 * 120.00113 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.50096 * 34.93415 * 10 9 7 12 12 C 1.53041 * 109.50044 * 155.00443 * 10 9 7 13 13 C 1.53041 * 109.54033 * 181.31602 * 12 10 9 14 14 C 1.53187 * 109.31299 * 298.63275 * 13 12 10 15 15 N 1.46929 * 108.77793 * 54.63220 * 14 13 12 16 16 C 1.34775 * 120.63450 * 126.41358 * 15 14 13 17 17 O 1.21758 * 120.00623 * 173.62321 * 16 15 14 18 18 C 1.46302 * 119.99345 * 353.62818 * 16 15 14 19 19 N 1.32510 * 125.56991 * 354.17126 * 18 16 15 20 20 C 1.32019 * 109.86713 * 180.02562 * 19 18 16 21 21 C 1.39362 * 107.93590 * 0.02562 * 20 19 18 22 22 C 1.40416 * 133.41614 * 179.97438 * 21 20 19 23 23 C 1.36341 * 119.18712 * 179.18690 * 22 21 20 24 24 C 1.40333 * 119.58465 * 0.71662 * 23 22 21 25 25 C 1.35165 * 120.39389 * 359.52387 * 24 23 22 26 26 N 1.36179 * 120.59994 * 0.02562 * 25 24 23 27 27 C 1.46932 * 118.73800 * 306.39388 * 15 14 13 28 28 H 0.96994 * 120.00033 * 359.73074 * 1 2 3 29 29 H 0.97003 * 119.99649 * 0.02562 * 9 7 2 30 30 H 1.09006 * 109.45381 * 301.33184 * 12 10 9 31 31 H 1.08992 * 109.46161 * 61.30413 * 12 10 9 32 32 H 1.09007 * 109.49601 * 58.58250 * 13 12 10 33 33 H 1.08995 * 109.49699 * 178.67861 * 13 12 10 34 34 H 1.08991 * 109.58925 * 174.41997 * 14 13 12 35 35 H 1.09005 * 109.58395 * 294.84965 * 14 13 12 36 36 H 1.08003 * 126.02782 * 180.02562 * 20 19 18 37 37 H 1.07996 * 120.40562 * 359.97438 * 22 21 20 38 38 H 1.07995 * 120.21078 * 180.28660 * 23 22 21 39 39 H 1.07994 * 119.79928 * 179.54315 * 24 23 22 40 40 H 1.08003 * 119.69808 * 179.97438 * 25 24 23 41 41 H 1.08999 * 109.58791 * 293.82135 * 27 15 14 42 42 H 1.08994 * 109.58371 * 173.38917 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3464 -0.0067 5 1 1.8865 2.3993 -1.2092 6 1 1.8965 2.3936 1.2157 7 6 2.0103 -1.2022 -0.0057 8 1 3.0903 -1.2022 -0.0102 9 7 1.3256 -2.3881 -0.0057 10 6 2.0581 -3.6568 -0.0112 11 1 2.9717 -3.5520 0.5740 12 6 1.1834 -4.7542 0.5994 13 6 1.9597 -6.0729 0.6241 14 6 2.3143 -6.4791 -0.8097 15 7 3.0309 -5.3689 -1.4523 16 6 4.2314 -5.5699 -2.0309 17 8 4.7620 -4.6725 -2.6600 18 6 4.8971 -6.8665 -1.9033 19 7 4.4762 -7.8790 -1.1592 20 6 5.3105 -8.8959 -1.2722 21 6 6.3325 -8.5181 -2.1411 22 6 7.4758 -9.1716 -2.6284 23 6 8.2928 -8.5187 -3.5030 24 6 7.9866 -7.2044 -3.8879 25 6 6.8842 -6.5895 -3.4045 26 7 6.0550 -7.2338 -2.5375 27 6 2.4137 -4.0356 -1.4524 28 1 -0.4850 0.8400 0.0039 29 1 0.3556 -2.3880 -0.0020 30 1 0.9086 -4.4755 1.6167 31 1 0.2814 -4.8753 -0.0003 32 1 2.8746 -5.9457 1.2030 33 1 1.3448 -6.8486 1.0805 34 1 2.9511 -7.3635 -0.7921 35 1 1.4013 -6.6946 -1.3648 36 1 5.2173 -9.8519 -0.7784 37 1 7.6983 -10.1836 -2.3241 38 1 9.1740 -9.0073 -3.8917 39 1 8.6354 -6.6813 -4.5748 40 1 6.6595 -5.5776 -3.7080 41 1 1.5088 -4.0518 -2.0598 42 1 3.1161 -3.3079 -1.8586 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999696566.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:45 Heat of formation + Delta-G solvation = 83.175753 kcal Electronic energy + Delta-G solvation = -25895.563542 eV Core-core repulsion = 22263.740390 eV Total energy + Delta-G solvation = -3631.823152 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.16201 -39.68043 -37.79106 -37.22206 -34.45709 -33.63822 -32.29323 -31.37301 -30.98010 -29.05457 -27.88133 -25.50130 -24.36498 -23.83587 -23.12700 -22.46553 -21.70953 -20.53638 -19.21213 -17.54274 -17.18088 -17.04239 -16.74963 -16.35346 -15.84066 -15.55199 -15.08696 -14.74823 -14.49805 -14.35728 -13.91942 -13.82057 -13.38432 -13.27952 -12.80319 -12.62899 -12.36296 -12.28327 -12.18751 -12.06085 -11.44304 -11.11040 -11.07219 -10.82721 -10.78498 -10.49401 -10.14607 -10.08616 -9.76972 -9.75509 -9.67472 -9.31566 -9.04713 -8.34765 -7.76572 -6.96732 -5.76449 -3.05867 0.44327 0.60583 2.07777 2.16819 3.05330 3.31646 3.42823 3.45862 3.51827 3.54263 4.12634 4.14563 4.37248 4.51492 4.56115 4.61094 4.67867 5.01540 5.26319 5.31198 5.37448 5.45316 5.48130 5.54811 5.63653 5.75705 5.80027 5.89848 5.92447 6.02234 6.15877 6.20963 6.27677 6.32843 6.43111 6.53006 6.58323 6.72202 6.87972 6.91816 7.09982 7.38240 7.69758 7.74127 8.27719 8.42058 9.53609 10.08268 10.43922 11.45946 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019806 B = 0.003298 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.374722 B = 8486.874044 C = 9628.737540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.128 4.128 13 C -0.122 4.122 14 C 0.056 3.944 15 N -0.576 5.576 16 C 0.598 3.402 17 O -0.552 6.552 18 C 0.103 3.897 19 N -0.400 5.400 20 C -0.015 4.015 21 C 0.017 3.983 22 C -0.082 4.082 23 C -0.112 4.112 24 C -0.136 4.136 25 C 0.067 3.933 26 N -0.321 5.321 27 C 0.094 3.906 28 H 0.255 0.745 29 H 0.386 0.614 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.152 0.848 35 H 0.058 0.942 36 H 0.189 0.811 37 H 0.151 0.849 38 H 0.140 0.860 39 H 0.153 0.847 40 H 0.180 0.820 41 H 0.065 0.935 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.069 -23.317 -5.501 27.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.058 3.942 11 H 0.069 0.931 12 C -0.166 4.166 13 C -0.161 4.161 14 C -0.066 4.066 15 N -0.307 5.307 16 C 0.384 3.616 17 O -0.430 6.430 18 C -0.146 4.146 19 N -0.116 5.116 20 C -0.176 4.176 21 C -0.095 4.095 22 C -0.102 4.102 23 C -0.134 4.134 24 C -0.157 4.157 25 C -0.055 4.055 26 N 0.011 4.989 27 C -0.030 4.030 28 H 0.065 0.935 29 H 0.220 0.780 30 H 0.084 0.916 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.168 0.832 35 H 0.076 0.924 36 H 0.206 0.794 37 H 0.168 0.832 38 H 0.158 0.842 39 H 0.171 0.829 40 H 0.197 0.803 41 H 0.083 0.917 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 13.610 -22.408 -5.359 26.759 hybrid contribution 0.753 0.970 -0.512 1.330 sum 14.362 -21.437 -5.871 26.463 Atomic orbital electron populations 1.69675 1.05107 1.25620 1.57608 1.24751 0.95521 0.97734 1.02762 0.86117 0.78929 0.84031 0.77161 1.20467 1.21800 1.21848 1.19326 0.91124 0.84001 1.42753 0.91021 1.42399 1.05846 0.99590 1.87962 1.20489 0.95054 0.86501 0.92153 0.93145 1.21864 0.98710 0.94510 1.01554 1.21783 1.00442 0.97488 0.96402 1.23074 0.98578 0.92237 0.92727 1.47919 1.17231 1.11723 1.53802 1.16263 0.81523 0.83563 0.80227 1.90823 1.65779 1.43540 1.42900 1.22587 0.89942 0.98472 1.03608 1.69434 1.25593 0.99354 1.17202 1.22858 0.92147 0.99987 1.02585 1.19994 1.00205 0.85861 1.03448 1.20557 0.91824 1.00569 0.97261 1.21186 1.00143 0.94573 0.97460 1.20992 0.96808 0.95934 1.01967 1.22143 0.91024 1.00029 0.92311 1.42395 1.16994 1.11815 1.27690 1.22905 0.97827 0.80927 1.01375 0.93524 0.78030 0.91589 0.92162 0.91868 0.91192 0.83235 0.92382 0.79369 0.83169 0.84177 0.82950 0.80318 0.91699 0.89193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.40 13.06 55.49 0.72 -27.68 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.93 29.55 -169.99 -5.02 17.91 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 7 C -0.24 -6.85 9.93 -15.06 -0.15 -7.00 16 8 H 0.07 2.02 7.83 -52.48 -0.41 1.61 16 9 N -0.72 -18.34 5.12 -53.31 -0.27 -18.61 16 10 C 0.17 3.55 2.92 -67.81 -0.20 3.35 16 11 H 0.05 1.13 8.08 -51.93 -0.42 0.71 16 12 C -0.13 -2.19 5.35 -26.69 -0.14 -2.34 16 13 C -0.12 -1.74 6.08 -26.61 -0.16 -1.91 16 14 C 0.06 0.82 6.31 -3.71 -0.02 0.80 16 15 N -0.58 -10.09 2.97 -174.44 -0.52 -10.61 16 16 C 0.60 10.77 7.65 -13.02 -0.10 10.67 16 17 O -0.55 -11.19 14.80 5.14 0.08 -11.11 16 18 C 0.10 1.57 7.59 -153.89 -1.17 0.40 16 19 N -0.40 -5.34 7.44 -10.62 -0.08 -5.42 16 20 C -0.02 -0.16 12.00 -17.05 -0.20 -0.36 16 21 C 0.02 0.17 6.80 -84.21 -0.57 -0.40 16 22 C -0.08 -0.58 10.11 -39.45 -0.40 -0.98 16 23 C -0.11 -0.70 10.08 -39.48 -0.40 -1.10 16 24 C -0.14 -1.03 9.98 -39.89 -0.40 -1.43 16 25 C 0.07 0.75 10.52 -16.72 -0.18 0.57 16 26 N -0.32 -4.17 2.95 -58.88 -0.17 -4.34 16 27 C 0.09 1.89 6.00 -3.70 -0.02 1.87 16 28 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.39 10.33 7.80 -40.82 -0.32 10.01 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.15 2.08 3.66 -82.19 -0.30 1.78 16 35 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.19 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 38 H 0.14 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.18 2.11 6.79 -52.48 -0.36 1.76 16 41 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 42 H 0.09 2.05 7.05 -51.93 -0.37 1.68 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -34.13 344.64 -9.82 -43.95 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -5.53 Total: 9.03 kcal Atomic # 6 Polarization: 5.91 SS G_CDS: -4.21 Total: 1.71 kcal Atomic # 7 Polarization: -66.35 SS G_CDS: -0.32 Total: -66.67 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.08 Total: -11.11 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -5.02 Total: 17.91 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.13 -9.82 -43.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999696566.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.122 kcal (2) G-P(sol) polarization free energy of solvation -34.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds