Wall clock time and date at job start Fri Apr 10 2020 23:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99952 * 2 1 4 4 H 1.48499 * 109.47046 * 269.99884 * 3 2 1 5 5 H 1.48500 * 109.47196 * 29.99584 * 3 2 1 6 6 H 1.48499 * 109.47234 * 149.99888 * 3 2 1 7 7 C 1.38806 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00403 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00157 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00247 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.49648 * 324.93014 * 10 9 7 12 12 C 1.53040 * 109.52338 * 204.85136 * 10 9 7 13 13 C 1.53044 * 109.53653 * 178.66567 * 12 10 9 14 14 C 1.52754 * 109.38435 * 61.24246 * 13 12 10 15 15 N 1.46932 * 109.00773 * 305.58582 * 14 13 12 16 16 C 1.34770 * 120.63063 * 233.58561 * 15 14 13 17 17 O 1.21601 * 120.00368 * 5.54658 * 16 15 14 18 18 C 1.47524 * 120.00199 * 185.54695 * 16 15 14 19 19 C 1.46503 * 120.16571 * 40.75331 * 18 16 15 20 20 C 1.35529 * 119.04826 * 180.02562 * 19 18 16 21 21 C 1.41230 * 119.42881 * 0.02562 * 20 19 18 22 22 C 1.37908 * 132.97715 * 180.02562 * 21 20 19 23 23 N 1.33443 * 107.66198 * 179.97438 * 22 21 20 24 24 C 1.30746 * 109.93733 * 359.74029 * 23 22 21 25 25 N 1.35919 * 109.20532 * 0.41870 * 24 23 22 26 26 C 1.36320 * 120.16765 * 220.78208 * 18 16 15 27 27 C 1.46924 * 118.73789 * 53.30937 * 15 14 13 28 28 H 0.96995 * 119.99740 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99603 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.46307 * 298.68699 * 12 10 9 31 31 H 1.09001 * 109.45947 * 58.64814 * 12 10 9 32 32 H 1.09002 * 109.49437 * 181.32075 * 13 12 10 33 33 H 1.09000 * 109.49770 * 301.37991 * 13 12 10 34 34 H 1.08996 * 109.51130 * 185.70363 * 14 13 12 35 35 H 1.08999 * 109.43611 * 65.41844 * 14 13 12 36 36 H 1.08001 * 120.47793 * 0.03371 * 19 18 16 37 37 H 1.07999 * 120.28985 * 180.02562 * 20 19 18 38 38 H 1.07999 * 126.16590 * 0.02562 * 22 21 20 39 39 H 1.07998 * 125.39813 * 180.02562 * 24 23 22 40 40 H 1.07998 * 119.74886 * 359.97438 * 26 18 16 41 41 H 1.09003 * 109.58761 * 66.42979 * 27 15 14 42 42 H 1.08997 * 109.58910 * 186.85734 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5655 -3.2065 0.5911 12 6 5.5011 -2.2595 0.6078 13 6 6.2543 -3.5914 0.6385 14 6 6.4235 -4.1112 -0.7879 15 7 5.1047 -4.1780 -1.4324 16 6 4.6765 -5.3213 -2.0031 17 8 5.3376 -6.3368 -1.9007 18 6 3.4057 -5.3410 -2.7521 19 6 3.0522 -4.2241 -3.6317 20 6 1.8788 -4.2654 -4.3087 21 6 1.0258 -5.3800 -4.1513 22 6 -0.2009 -5.7083 -4.6890 23 7 -0.5566 -6.8945 -4.1918 24 6 0.3703 -7.3341 -3.3812 25 7 1.3769 -6.4231 -3.3169 26 6 2.5542 -6.3984 -2.6288 27 6 4.2593 -2.9764 -1.4375 28 1 -0.4849 0.8400 -0.0004 29 1 3.8646 -0.3621 0.0007 30 1 6.0562 -1.5423 0.0033 31 1 5.3993 -1.8764 1.6232 32 1 7.2345 -3.4447 1.0922 33 1 5.6878 -4.3164 1.2230 34 1 6.8686 -5.1058 -0.7625 35 1 7.0692 -3.4337 -1.3466 36 1 3.7171 -3.3798 -3.7392 37 1 1.5984 -3.4531 -4.9628 38 1 -0.7706 -5.1131 -5.3873 39 1 0.3380 -8.2697 -2.8427 40 1 2.8134 -7.2225 -1.9807 41 1 4.7250 -2.2045 -2.0502 42 1 3.2769 -3.2225 -1.8406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999703335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:47 Heat of formation + Delta-G solvation = 78.022323 kcal Electronic energy + Delta-G solvation = -26277.236085 eV Core-core repulsion = 22645.189464 eV Total energy + Delta-G solvation = -3632.046621 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.72279 -40.27684 -37.71411 -36.84281 -34.56652 -33.58884 -32.65375 -31.65703 -30.73802 -28.85077 -28.19027 -25.78687 -24.37617 -23.63868 -22.87720 -21.92073 -21.55373 -20.65252 -19.26735 -18.14943 -17.66681 -17.26314 -16.38327 -16.14256 -15.82330 -15.24486 -14.94486 -14.69549 -14.66043 -14.42933 -14.07106 -13.91794 -13.51175 -13.32047 -12.94159 -12.81530 -12.65778 -12.58656 -11.94052 -11.80674 -11.61820 -11.33149 -11.02871 -10.88946 -10.73625 -10.60452 -10.39424 -10.33123 -10.18548 -9.91359 -9.70995 -9.25619 -9.22556 -8.56703 -7.58007 -7.42794 -5.88909 -3.27468 0.65130 1.02465 2.36348 2.61025 3.01249 3.11040 3.27784 3.29996 3.37128 3.43064 4.29211 4.36941 4.47125 4.54909 4.69178 4.77245 4.87398 4.92978 5.02097 5.05307 5.25363 5.33264 5.39319 5.46881 5.48597 5.59585 5.69770 5.73486 5.81224 5.85805 5.90430 6.00464 6.09629 6.11564 6.14687 6.41524 6.47022 6.52390 6.56704 6.69218 7.05626 7.37999 7.80773 7.84432 8.06933 8.29201 9.05835 9.77856 9.96111 11.28592 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.010282 B = 0.005349 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.595325 B = 5233.348811 C = 7400.947562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.011 3.989 3 Si 0.883 3.117 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.253 4.253 8 H 0.089 0.911 9 N -0.742 5.742 10 C 0.173 3.827 11 H 0.059 0.941 12 C -0.130 4.130 13 C -0.129 4.129 14 C 0.112 3.888 15 N -0.595 5.595 16 C 0.573 3.427 17 O -0.548 6.548 18 C -0.142 4.142 19 C -0.098 4.098 20 C -0.073 4.073 21 C 0.011 3.989 22 C -0.019 4.019 23 N -0.454 5.454 24 C 0.148 3.852 25 N -0.376 5.376 26 C 0.115 3.885 27 C 0.077 3.923 28 H 0.261 0.739 29 H 0.363 0.637 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.146 0.854 37 H 0.153 0.847 38 H 0.182 0.818 39 H 0.213 0.787 40 H 0.173 0.827 41 H 0.067 0.933 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.172 -9.545 -5.840 15.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.186 4.186 3 Si 0.713 3.287 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.203 1.203 7 C -0.383 4.383 8 H 0.107 0.893 9 N -0.384 5.384 10 C 0.062 3.938 11 H 0.077 0.923 12 C -0.169 4.169 13 C -0.168 4.168 14 C -0.010 4.010 15 N -0.327 5.327 16 C 0.361 3.639 17 O -0.427 6.427 18 C -0.148 4.148 19 C -0.118 4.118 20 C -0.092 4.092 21 C -0.097 4.097 22 C -0.172 4.172 23 N -0.167 5.167 24 C -0.127 4.127 25 N -0.048 5.048 26 C -0.007 4.007 27 C -0.048 4.048 28 H 0.071 0.929 29 H 0.197 0.803 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.163 0.837 37 H 0.170 0.830 38 H 0.199 0.801 39 H 0.229 0.771 40 H 0.190 0.810 41 H 0.085 0.915 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.484 -10.648 -5.877 15.423 hybrid contribution 1.156 1.848 0.305 2.201 sum 10.639 -8.799 -5.572 14.889 Atomic orbital electron populations 1.69704 1.05136 1.26022 1.56528 1.24678 0.95188 0.97218 1.01481 0.86585 0.79260 0.85006 0.77847 1.20955 1.21645 1.20266 1.19025 0.80298 0.94731 1.44213 0.89276 1.42727 1.04128 1.01671 1.89849 1.20448 0.91264 0.89631 0.92494 0.92266 1.21877 0.96491 0.96602 1.01886 1.21795 1.00937 0.97854 0.96216 1.21546 0.83652 1.02658 0.93151 1.48089 1.18238 1.11586 1.54811 1.17763 0.84393 0.83205 0.78585 1.90779 1.57531 1.32667 1.61705 1.20344 0.96449 0.95719 1.02295 1.22130 0.97497 0.96779 0.95408 1.20436 0.92701 0.95907 1.00169 1.19759 0.98995 0.91659 0.99258 1.22567 0.93950 0.95211 1.05424 1.69931 1.25887 1.11205 1.09675 1.25135 0.84807 0.97722 1.05079 1.42911 1.14737 1.16825 1.30327 1.21471 0.84057 0.99294 0.95920 1.23205 0.94926 0.85000 1.01669 0.92879 0.80346 0.92049 0.91240 0.90750 0.91412 0.89105 0.91414 0.83677 0.82953 0.80096 0.77072 0.81019 0.91503 0.88490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.90 13.97 55.49 0.78 -27.12 16 2 C 0.01 0.31 5.50 -17.43 -0.10 0.21 16 3 Si 0.88 20.77 27.74 -169.99 -4.71 16.06 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.28 -6.08 6.52 56.52 0.37 -5.71 16 7 C -0.25 -6.63 10.41 -15.06 -0.16 -6.78 16 8 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 9 N -0.74 -15.82 4.93 -53.31 -0.26 -16.09 16 10 C 0.17 2.95 2.92 -67.81 -0.20 2.76 16 11 H 0.06 1.13 8.08 -51.93 -0.42 0.71 16 12 C -0.13 -1.78 5.36 -26.69 -0.14 -1.92 16 13 C -0.13 -1.46 6.06 -26.83 -0.16 -1.62 16 14 C 0.11 1.31 6.41 -3.93 -0.03 1.29 16 15 N -0.60 -8.17 2.98 -174.26 -0.52 -8.69 16 16 C 0.57 8.46 7.32 -12.48 -0.09 8.36 16 17 O -0.55 -9.15 16.32 5.28 0.09 -9.06 16 18 C -0.14 -1.97 5.16 -103.47 -0.53 -2.50 16 19 C -0.10 -1.28 7.62 -37.22 -0.28 -1.56 16 20 C -0.07 -0.94 10.09 -39.41 -0.40 -1.33 16 21 C 0.01 0.16 6.78 -84.02 -0.57 -0.41 16 22 C -0.02 -0.26 12.00 -16.97 -0.20 -0.47 16 23 N -0.45 -6.65 11.18 -13.78 -0.15 -6.80 16 24 C 0.15 1.87 12.76 -89.37 -1.14 0.73 16 25 N -0.38 -5.11 2.94 -61.93 -0.18 -5.29 16 26 C 0.12 1.50 10.52 -16.22 -0.17 1.33 16 27 C 0.08 1.16 4.52 -3.71 -0.02 1.14 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.36 7.61 5.66 -40.82 -0.23 7.38 16 30 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.15 1.72 6.78 -52.49 -0.36 1.37 16 37 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 38 H 0.18 2.02 8.06 -52.49 -0.42 1.60 16 39 H 0.21 1.79 8.06 -52.49 -0.42 1.36 16 40 H 0.17 1.86 8.03 -52.49 -0.42 1.43 16 41 H 0.07 0.96 8.12 -51.93 -0.42 0.54 16 42 H 0.10 1.61 4.74 -51.93 -0.25 1.36 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -32.93 343.87 -9.41 -42.34 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -5.43 Total: 10.27 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -4.19 Total: -0.79 kcal Atomic # 7 Polarization: -63.65 SS G_CDS: -0.34 Total: -63.99 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -4.71 Total: 16.06 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.93 -9.41 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999703335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.359 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds