Wall clock time and date at job start Fri Apr 10 2020 23:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 119.99952 * 2 1 4 4 H 1.48499 * 109.47046 * 269.99884 * 3 2 1 5 5 H 1.48500 * 109.47196 * 29.99584 * 3 2 1 6 6 H 1.48499 * 109.47234 * 149.99888 * 3 2 1 7 7 C 1.38806 * 119.99879 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00403 * 359.97438 * 7 2 1 9 9 N 1.36940 * 120.00157 * 180.02562 * 7 2 1 10 10 C 1.46496 * 120.00247 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.49648 * 324.93014 * 10 9 7 12 12 C 1.53040 * 109.52338 * 204.85136 * 10 9 7 13 13 C 1.53044 * 109.53653 * 178.66567 * 12 10 9 14 14 C 1.52754 * 109.38435 * 61.24246 * 13 12 10 15 15 N 1.46932 * 109.00773 * 305.58582 * 14 13 12 16 16 C 1.34770 * 120.63063 * 233.58561 * 15 14 13 17 17 O 1.21601 * 120.00368 * 5.54658 * 16 15 14 18 18 C 1.47524 * 120.00199 * 185.54695 * 16 15 14 19 19 C 1.46503 * 120.16571 * 40.75331 * 18 16 15 20 20 C 1.35529 * 119.04826 * 180.02562 * 19 18 16 21 21 C 1.41230 * 119.42881 * 0.02562 * 20 19 18 22 22 C 1.37908 * 132.97715 * 180.02562 * 21 20 19 23 23 N 1.33443 * 107.66198 * 179.97438 * 22 21 20 24 24 C 1.30746 * 109.93733 * 359.74029 * 23 22 21 25 25 N 1.35919 * 109.20532 * 0.41870 * 24 23 22 26 26 C 1.36320 * 120.16765 * 220.78208 * 18 16 15 27 27 C 1.46924 * 118.73789 * 53.30937 * 15 14 13 28 28 H 0.96995 * 119.99740 * 0.02562 * 1 2 3 29 29 H 0.97000 * 119.99603 * 359.97438 * 9 7 2 30 30 H 1.08999 * 109.46307 * 298.68699 * 12 10 9 31 31 H 1.09001 * 109.45947 * 58.64814 * 12 10 9 32 32 H 1.09002 * 109.49437 * 181.32075 * 13 12 10 33 33 H 1.09000 * 109.49770 * 301.37991 * 13 12 10 34 34 H 1.08996 * 109.51130 * 185.70363 * 14 13 12 35 35 H 1.08999 * 109.43611 * 65.41844 * 14 13 12 36 36 H 1.08001 * 120.47793 * 0.03371 * 19 18 16 37 37 H 1.07999 * 120.28985 * 180.02562 * 20 19 18 38 38 H 1.07999 * 126.16590 * 0.02562 * 22 21 20 39 39 H 1.07998 * 125.39813 * 180.02562 * 24 23 22 40 40 H 1.07998 * 119.74886 * 359.97438 * 26 18 16 41 41 H 1.09003 * 109.58761 * 66.42979 * 27 15 14 42 42 H 1.08997 * 109.58910 * 186.85734 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1375 0.0014 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4709 0.0011 11 1 3.5655 -3.2065 0.5911 12 6 5.5011 -2.2595 0.6078 13 6 6.2543 -3.5914 0.6385 14 6 6.4235 -4.1112 -0.7879 15 7 5.1047 -4.1780 -1.4324 16 6 4.6765 -5.3213 -2.0031 17 8 5.3376 -6.3368 -1.9007 18 6 3.4057 -5.3410 -2.7521 19 6 3.0522 -4.2241 -3.6317 20 6 1.8788 -4.2654 -4.3087 21 6 1.0258 -5.3800 -4.1513 22 6 -0.2009 -5.7083 -4.6890 23 7 -0.5566 -6.8945 -4.1918 24 6 0.3703 -7.3341 -3.3812 25 7 1.3769 -6.4231 -3.3169 26 6 2.5542 -6.3984 -2.6288 27 6 4.2593 -2.9764 -1.4375 28 1 -0.4849 0.8400 -0.0004 29 1 3.8646 -0.3621 0.0007 30 1 6.0562 -1.5423 0.0033 31 1 5.3993 -1.8764 1.6232 32 1 7.2345 -3.4447 1.0922 33 1 5.6878 -4.3164 1.2230 34 1 6.8686 -5.1058 -0.7625 35 1 7.0692 -3.4337 -1.3466 36 1 3.7171 -3.3798 -3.7392 37 1 1.5984 -3.4531 -4.9628 38 1 -0.7706 -5.1131 -5.3873 39 1 0.3380 -8.2697 -2.8427 40 1 2.8134 -7.2225 -1.9807 41 1 4.7250 -2.2045 -2.0502 42 1 3.2769 -3.2225 -1.8406 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999703335.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:47 Heat of formation + Delta-G solvation = 58.613982 kcal Electronic energy + Delta-G solvation = -26278.077694 eV Core-core repulsion = 22645.189464 eV Total energy + Delta-G solvation = -3632.888230 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.75176 -41.42346 -38.94470 -37.92723 -36.17234 -34.64538 -33.92452 -33.30818 -31.85475 -30.35623 -29.21768 -26.89455 -25.80893 -25.01470 -23.91513 -23.05756 -22.73795 -21.98412 -20.44328 -19.52183 -19.20105 -18.32560 -17.51211 -17.23839 -16.92248 -16.65816 -16.27383 -16.00703 -15.68019 -15.57017 -15.45875 -15.14522 -14.83765 -14.48490 -14.28894 -14.05632 -13.90587 -13.82817 -13.36701 -12.96620 -12.86297 -12.73508 -12.56150 -12.07780 -12.01457 -11.87813 -11.72408 -11.68699 -11.50500 -11.39034 -11.21580 -10.97359 -10.32779 -9.87228 -9.24477 -8.60393 -8.00585 -5.36463 -0.39218 -0.00367 1.31178 1.41283 1.44693 1.52132 1.52606 1.94093 2.04854 2.37477 2.50364 3.18895 3.30816 3.36544 3.60108 3.62553 3.69799 3.81993 3.89852 3.90599 4.03712 4.12655 4.26695 4.35890 4.39570 4.49740 4.60763 4.66976 4.75224 4.83758 4.86229 4.91383 4.98529 5.10279 5.10645 5.33532 5.40171 5.42872 5.46698 5.53710 5.76251 6.06043 6.20343 6.24115 6.76681 6.92723 7.08647 7.81638 8.02393 9.20460 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.010282 B = 0.005349 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.595325 B = 5233.348811 C = 7400.947562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.059 4.059 3 Si 0.954 3.046 4 H -0.274 1.274 5 H -0.303 1.303 6 H -0.247 1.247 7 C -0.230 4.230 8 H 0.050 0.950 9 N -0.742 5.742 10 C 0.167 3.833 11 H 0.032 0.968 12 C -0.123 4.123 13 C -0.120 4.120 14 C 0.108 3.892 15 N -0.592 5.592 16 C 0.575 3.425 17 O -0.569 6.569 18 C -0.159 4.159 19 C -0.104 4.104 20 C -0.080 4.080 21 C -0.012 4.012 22 C -0.030 4.030 23 N -0.482 5.482 24 C 0.153 3.847 25 N -0.384 5.384 26 C 0.115 3.885 27 C 0.090 3.910 28 H 0.257 0.743 29 H 0.370 0.630 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.055 0.945 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.156 0.844 37 H 0.173 0.827 38 H 0.200 0.800 39 H 0.249 0.751 40 H 0.192 0.808 41 H 0.084 0.916 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.982 -9.050 -5.872 16.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.632 5.632 2 C -0.250 4.250 3 Si 0.781 3.219 4 H -0.200 1.200 5 H -0.230 1.230 6 H -0.171 1.171 7 C -0.361 4.361 8 H 0.068 0.932 9 N -0.386 5.386 10 C 0.058 3.942 11 H 0.050 0.950 12 C -0.161 4.161 13 C -0.158 4.158 14 C -0.013 4.013 15 N -0.323 5.323 16 C 0.363 3.637 17 O -0.450 6.450 18 C -0.166 4.166 19 C -0.124 4.124 20 C -0.099 4.099 21 C -0.119 4.119 22 C -0.182 4.182 23 N -0.196 5.196 24 C -0.122 4.122 25 N -0.056 5.056 26 C -0.007 4.007 27 C -0.035 4.035 28 H 0.066 0.934 29 H 0.204 0.796 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.126 0.874 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.174 0.826 37 H 0.190 0.810 38 H 0.217 0.783 39 H 0.265 0.735 40 H 0.209 0.791 41 H 0.102 0.898 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.368 -10.175 -5.913 17.072 hybrid contribution 0.248 1.531 0.344 1.588 sum 12.616 -8.644 -5.569 16.276 Atomic orbital electron populations 1.69902 1.07355 1.26680 1.59311 1.25490 0.95959 1.01266 1.02329 0.85436 0.78740 0.79447 0.78278 1.20033 1.23013 1.17127 1.18888 0.82463 0.93039 1.41720 0.93235 1.42645 1.02362 1.03578 1.89967 1.20628 0.92702 0.87262 0.93655 0.95016 1.21811 0.94252 0.98444 1.01605 1.21756 1.02073 0.95991 0.96023 1.21777 0.82696 1.03362 0.93507 1.48080 1.18774 1.10757 1.54655 1.17829 0.84363 0.83055 0.78446 1.90763 1.58220 1.33268 1.62737 1.20441 0.96635 0.96515 1.02976 1.22271 0.97841 0.96964 0.95367 1.20729 0.92487 0.96207 1.00466 1.20076 0.99527 0.92428 0.99897 1.22982 0.94178 0.95353 1.05700 1.69946 1.26946 1.11839 1.10862 1.25949 0.83827 0.98343 1.04100 1.43069 1.15080 1.17007 1.30465 1.21780 0.83670 0.99605 0.95657 1.22838 0.94755 0.85855 1.00022 0.93422 0.79580 0.90127 0.91581 0.87426 0.92664 0.89179 0.88978 0.82614 0.80967 0.78345 0.73472 0.79138 0.89797 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -60.94 13.97 21.65 0.30 -60.64 16 2 C -0.06 -3.27 5.50 84.86 0.47 -2.80 16 3 Si 0.95 42.41 27.74 68.60 1.90 44.31 16 4 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 5 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 6 H -0.25 -9.65 6.52 99.48 0.65 -9.00 16 7 C -0.23 -12.22 10.41 84.03 0.87 -11.34 16 8 H 0.05 2.98 8.06 -2.91 -0.02 2.95 16 9 N -0.74 -30.74 4.93 -322.57 -1.59 -32.33 16 10 C 0.17 5.51 2.92 45.07 0.13 5.64 16 11 H 0.03 1.22 8.08 -2.39 -0.02 1.20 16 12 C -0.12 -2.97 5.36 30.62 0.16 -2.81 16 13 C -0.12 -2.31 6.06 30.53 0.19 -2.13 16 14 C 0.11 2.19 6.41 86.22 0.55 2.74 16 15 N -0.59 -15.20 2.98 -823.51 -2.45 -17.65 16 16 C 0.57 16.41 7.32 86.69 0.63 17.05 16 17 O -0.57 -18.41 16.32 -4.04 -0.07 -18.48 16 18 C -0.16 -4.38 5.16 -19.12 -0.10 -4.48 16 19 C -0.10 -2.70 7.62 23.80 0.18 -2.52 16 20 C -0.08 -2.05 10.09 22.38 0.23 -1.82 16 21 C -0.01 -0.33 6.78 38.81 0.26 -0.07 16 22 C -0.03 -0.85 12.00 84.37 1.01 0.16 16 23 N -0.48 -14.04 11.18 -197.52 -2.21 -16.25 16 24 C 0.15 3.76 12.76 179.91 2.30 6.05 16 25 N -0.38 -10.33 2.94 -349.86 -1.03 -11.36 16 26 C 0.12 2.96 10.52 83.54 0.88 3.84 16 27 C 0.09 2.59 4.52 86.36 0.39 2.98 16 28 H 0.26 15.27 8.31 -92.71 -0.77 14.50 16 29 H 0.37 14.43 5.66 -92.71 -0.52 13.91 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.92 7.00 -2.39 -0.02 1.90 16 35 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.16 3.55 6.78 -2.91 -0.02 3.53 16 37 H 0.17 3.52 8.06 -2.91 -0.02 3.49 16 38 H 0.20 4.45 8.06 -2.91 -0.02 4.43 16 39 H 0.25 3.75 8.06 -2.91 -0.02 3.73 16 40 H 0.19 3.97 8.03 -2.91 -0.02 3.95 16 41 H 0.08 2.17 8.12 -2.39 -0.02 2.15 16 42 H 0.08 2.61 4.74 -2.39 -0.01 2.60 16 Total: -1.00 -73.02 343.87 3.48 -69.54 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: 0.47 Total: 32.36 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 8.16 Total: 10.49 kcal Atomic # 7 Polarization: -131.25 SS G_CDS: -6.98 Total: -138.23 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.07 Total: -18.48 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.90 Total: 44.31 kcal Total: -73.02 3.48 -69.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999703335.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.153 kcal (2) G-P(sol) polarization free energy of solvation -73.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds