Wall clock time and date at job start Fri Apr 10 2020 23:00:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99657 * 2 1 4 4 H 1.48500 * 109.47130 * 270.27052 * 3 2 1 5 5 H 1.48496 * 109.47263 * 30.27489 * 3 2 1 6 6 H 1.48502 * 109.47200 * 150.27401 * 3 2 1 7 7 C 1.38817 * 120.00374 * 180.27193 * 2 1 3 8 8 H 1.08001 * 119.99483 * 359.72695 * 7 2 1 9 9 N 1.36933 * 120.00216 * 179.72637 * 7 2 1 10 10 C 1.46498 * 119.99965 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.49246 * 34.94436 * 10 9 7 12 12 C 1.53042 * 109.49349 * 154.99912 * 10 9 7 13 13 C 1.53039 * 109.53701 * 181.31540 * 12 10 9 14 14 C 1.53185 * 109.31731 * 298.64041 * 13 12 10 15 15 N 1.46928 * 108.77504 * 54.63501 * 14 13 12 16 16 C 1.34773 * 120.63568 * 126.41655 * 15 14 13 17 17 O 1.21599 * 120.00410 * 176.19908 * 16 15 14 18 18 C 1.47526 * 119.99769 * 356.19909 * 16 15 14 19 19 C 1.46501 * 120.16498 * 50.33083 * 18 16 15 20 20 C 1.35534 * 119.04594 * 179.97438 * 19 18 16 21 21 C 1.41227 * 119.42828 * 0.02562 * 20 19 18 22 22 C 1.37904 * 132.97189 * 179.97438 * 21 20 19 23 23 N 1.33458 * 107.66184 * 180.02562 * 22 21 20 24 24 C 1.30747 * 109.93029 * 359.97438 * 23 22 21 25 25 N 1.35914 * 109.21174 * 0.02562 * 24 23 22 26 26 C 1.36323 * 120.16586 * 230.05393 * 18 16 15 27 27 C 1.46934 * 118.73467 * 306.39010 * 15 14 13 28 28 H 0.96996 * 120.00593 * 359.73400 * 1 2 3 29 29 H 0.97000 * 119.99934 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.46713 * 301.34289 * 12 10 9 31 31 H 1.09000 * 109.45985 * 61.31779 * 12 10 9 32 32 H 1.09007 * 109.49303 * 58.59185 * 13 12 10 33 33 H 1.09000 * 109.50267 * 178.65220 * 13 12 10 34 34 H 1.09004 * 109.59081 * 174.41963 * 14 13 12 35 35 H 1.08996 * 109.58696 * 294.84657 * 14 13 12 36 36 H 1.07997 * 120.48037 * 359.97438 * 19 18 16 37 37 H 1.08007 * 120.28742 * 179.97438 * 20 19 18 38 38 H 1.07994 * 126.17326 * 359.97438 * 22 21 20 39 39 H 1.07999 * 125.38984 * 180.02562 * 24 23 22 40 40 H 1.07995 * 119.74514 * 359.97438 * 26 18 16 41 41 H 1.08997 * 109.58380 * 293.82184 * 27 15 14 42 42 H 1.09000 * 109.58474 * 173.40054 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4504 2.6510 0.7058 6 1 3.5506 1.4386 0.6942 7 6 2.0103 -1.2021 -0.0057 8 1 1.4703 -2.1374 -0.0057 9 7 3.3797 -1.2021 -0.0114 10 6 4.1122 -2.4708 -0.0168 11 1 3.5622 -3.2058 -0.6045 12 6 5.4973 -2.2581 -0.6319 13 6 6.2512 -3.5894 -0.6681 14 6 6.4315 -4.1087 0.7617 15 7 5.1144 -4.1784 1.4092 16 6 4.6907 -5.3222 1.9824 17 8 3.6291 -5.3485 2.5750 18 6 5.5147 -6.5425 1.8909 19 6 6.9354 -6.4997 2.2456 20 6 7.6711 -7.6343 2.1537 21 6 7.0541 -8.8280 1.7191 22 6 7.5211 -10.1111 1.5259 23 7 6.4979 -10.8545 1.0997 24 6 5.4193 -10.1206 1.0136 25 7 5.7131 -8.8478 1.3889 26 6 4.9565 -7.7168 1.4812 27 6 4.2683 -2.9772 1.4204 28 1 -0.4851 0.8399 0.0039 29 1 3.8646 -0.3620 -0.0110 30 1 5.3893 -1.8742 -1.6463 31 1 6.0558 -1.5412 -0.0299 32 1 5.6812 -4.3144 -1.2493 33 1 7.2283 -3.4420 -1.1281 34 1 6.8791 -5.1023 0.7360 35 1 7.0769 -3.4293 1.3185 36 1 7.3901 -5.5774 2.5757 37 1 8.7203 -7.6254 2.4098 38 1 8.5325 -10.4527 1.6893 39 1 4.4485 -10.4704 0.6947 40 1 3.9082 -7.7509 1.2240 41 1 4.7373 -2.2056 2.0309 42 1 3.2886 -3.2243 1.8293 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999703338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:50 Heat of formation + Delta-G solvation = 79.021246 kcal Electronic energy + Delta-G solvation = -25706.241694 eV Core-core repulsion = 22074.238389 eV Total energy + Delta-G solvation = -3632.003305 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.01699 -40.28822 -37.76834 -36.99776 -34.77370 -33.74934 -32.46703 -31.53159 -31.17224 -28.85711 -28.49956 -25.88594 -24.40173 -23.59704 -23.15967 -22.11915 -21.82098 -20.60941 -19.31655 -18.36061 -17.63338 -17.49310 -16.51954 -16.31245 -16.04076 -15.35364 -15.08225 -14.96180 -14.64305 -14.38232 -14.18132 -13.94398 -13.77311 -13.34001 -13.08890 -12.85809 -12.71616 -12.55075 -12.19189 -12.02817 -11.68088 -11.33692 -11.08925 -10.99341 -10.81146 -10.69661 -10.60831 -10.37839 -10.02661 -9.98732 -9.64666 -9.48590 -9.18627 -8.54951 -7.89795 -7.37257 -5.82980 -3.21030 0.41484 0.70279 2.11456 2.50018 2.78946 2.94088 3.15070 3.31908 3.34215 3.40904 4.08014 4.16233 4.27698 4.39627 4.50027 4.52434 4.61501 4.71179 4.91640 5.00553 5.09971 5.16464 5.27143 5.36883 5.40312 5.44467 5.55163 5.62669 5.70444 5.73495 5.79824 5.92255 5.98684 6.10441 6.14017 6.22366 6.27917 6.49998 6.61549 6.76575 6.79209 7.40057 7.52045 7.91523 8.09792 8.35438 9.12179 9.83807 10.01826 11.34881 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027235 B = 0.002965 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.855873 B = 9440.624501 C = 9900.232311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.251 4.251 8 H 0.092 0.908 9 N -0.741 5.741 10 C 0.173 3.827 11 H 0.060 0.940 12 C -0.130 4.130 13 C -0.129 4.129 14 C 0.098 3.902 15 N -0.595 5.595 16 C 0.564 3.436 17 O -0.527 6.527 18 C -0.137 4.137 19 C -0.101 4.101 20 C -0.078 4.078 21 C 0.002 3.998 22 C -0.019 4.019 23 N -0.455 5.455 24 C 0.153 3.847 25 N -0.375 5.375 26 C 0.111 3.889 27 C 0.092 3.908 28 H 0.261 0.739 29 H 0.363 0.637 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.145 0.855 37 H 0.152 0.848 38 H 0.181 0.819 39 H 0.215 0.785 40 H 0.175 0.825 41 H 0.064 0.936 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.799 -15.199 1.809 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.188 4.188 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.383 5.383 10 C 0.063 3.937 11 H 0.078 0.922 12 C -0.169 4.169 13 C -0.168 4.168 14 C -0.025 4.025 15 N -0.327 5.327 16 C 0.350 3.650 17 O -0.404 6.404 18 C -0.144 4.144 19 C -0.122 4.122 20 C -0.097 4.097 21 C -0.106 4.106 22 C -0.172 4.172 23 N -0.168 5.168 24 C -0.122 4.122 25 N -0.047 5.047 26 C -0.011 4.011 27 C -0.032 4.032 28 H 0.071 0.929 29 H 0.196 0.804 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.092 0.908 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.163 0.837 37 H 0.169 0.831 38 H 0.198 0.802 39 H 0.231 0.769 40 H 0.192 0.808 41 H 0.082 0.918 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 18.854 -16.135 1.865 24.885 hybrid contribution 0.453 2.167 0.235 2.226 sum 19.307 -13.968 2.100 23.922 Atomic orbital electron populations 1.69700 1.05145 1.25961 1.56848 1.24692 0.95228 0.97253 1.01642 0.86551 0.79192 0.84974 0.77772 1.21027 1.21671 1.20302 1.19083 0.80336 0.94865 1.43755 0.89068 1.42727 1.04155 1.01678 1.89782 1.20454 0.91053 0.89589 0.92649 0.92201 1.21879 0.96671 0.96430 1.01895 1.21871 1.00918 0.98138 0.95891 1.22053 0.84395 1.02179 0.93888 1.48150 1.18403 1.11394 1.54786 1.17776 0.85141 0.82560 0.79564 1.90872 1.22935 1.84579 1.42033 1.20494 0.94906 0.93666 1.05333 1.22114 0.91146 0.99097 0.99860 1.20416 1.00585 0.89196 0.99519 1.19745 0.84191 0.97836 1.08799 1.22575 0.99313 0.87944 1.07402 1.69975 0.98667 1.32302 1.15825 1.25236 1.00954 0.78004 1.07981 1.42954 1.09419 1.09122 1.43179 1.21556 0.97276 0.83352 0.98926 1.22813 0.95567 0.83939 1.00887 0.92925 0.80403 0.91193 0.92045 0.91428 0.90786 0.89400 0.91083 0.83712 0.83077 0.80170 0.76878 0.80783 0.91805 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.90 13.97 55.49 0.78 -28.13 16 2 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 3 Si 0.88 21.50 27.74 -169.99 -4.71 16.78 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 7 C -0.25 -6.90 10.41 -15.06 -0.16 -7.05 16 8 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 9 N -0.74 -16.66 4.93 -53.31 -0.26 -16.92 16 10 C 0.17 3.11 2.92 -67.82 -0.20 2.91 16 11 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 12 C -0.13 -1.77 5.35 -26.69 -0.14 -1.91 16 13 C -0.13 -1.33 6.08 -26.62 -0.16 -1.49 16 14 C 0.10 0.95 5.40 -3.71 -0.02 0.93 16 15 N -0.59 -8.12 2.97 -174.00 -0.52 -8.64 16 16 C 0.56 8.21 7.24 -12.48 -0.09 8.12 16 17 O -0.53 -9.95 16.45 5.28 0.09 -9.87 16 18 C -0.14 -1.53 5.06 -103.47 -0.52 -2.06 16 19 C -0.10 -0.85 7.60 -37.22 -0.28 -1.14 16 20 C -0.08 -0.59 10.09 -39.41 -0.40 -0.98 16 21 C 0.00 0.02 6.78 -84.02 -0.57 -0.55 16 22 C -0.02 -0.19 12.00 -16.97 -0.20 -0.39 16 23 N -0.45 -5.08 11.19 -13.78 -0.15 -5.24 16 24 C 0.15 1.48 12.76 -89.37 -1.14 0.34 16 25 N -0.37 -3.81 2.94 -61.94 -0.18 -3.99 16 26 C 0.11 1.16 10.59 -16.22 -0.17 0.99 16 27 C 0.09 1.58 6.01 -3.71 -0.02 1.56 16 28 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 29 H 0.36 7.93 5.66 -40.82 -0.23 7.70 16 30 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.71 4.50 -51.93 -0.23 0.48 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.15 0.95 7.17 -52.49 -0.38 0.58 16 37 H 0.15 0.66 8.06 -52.48 -0.42 0.23 16 38 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.21 1.30 8.06 -52.49 -0.42 0.87 16 40 H 0.18 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.10 2.02 7.02 -51.93 -0.36 1.65 16 LS Contribution 344.62 15.07 5.19 5.19 Total: -1.00 -34.97 344.62 -9.40 -44.37 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.44 Total: 7.02 kcal Atomic # 6 Polarization: 3.60 SS G_CDS: -4.18 Total: -0.58 kcal Atomic # 7 Polarization: -62.58 SS G_CDS: -0.34 Total: -62.92 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.71 Total: 16.78 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.97 -9.40 -44.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999703338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.387 kcal (2) G-P(sol) polarization free energy of solvation -34.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds