Wall clock time and date at job start Fri Apr 10 2020 23:00:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86799 * 119.99657 * 2 1 4 4 H 1.48500 * 109.47130 * 270.27052 * 3 2 1 5 5 H 1.48496 * 109.47263 * 30.27489 * 3 2 1 6 6 H 1.48502 * 109.47200 * 150.27401 * 3 2 1 7 7 C 1.38817 * 120.00374 * 180.27193 * 2 1 3 8 8 H 1.08001 * 119.99483 * 359.72695 * 7 2 1 9 9 N 1.36933 * 120.00216 * 179.72637 * 7 2 1 10 10 C 1.46498 * 119.99965 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.49246 * 34.94436 * 10 9 7 12 12 C 1.53042 * 109.49349 * 154.99912 * 10 9 7 13 13 C 1.53039 * 109.53701 * 181.31540 * 12 10 9 14 14 C 1.53185 * 109.31731 * 298.64041 * 13 12 10 15 15 N 1.46928 * 108.77504 * 54.63501 * 14 13 12 16 16 C 1.34773 * 120.63568 * 126.41655 * 15 14 13 17 17 O 1.21599 * 120.00410 * 176.19908 * 16 15 14 18 18 C 1.47526 * 119.99769 * 356.19909 * 16 15 14 19 19 C 1.46501 * 120.16498 * 50.33083 * 18 16 15 20 20 C 1.35534 * 119.04594 * 179.97438 * 19 18 16 21 21 C 1.41227 * 119.42828 * 0.02562 * 20 19 18 22 22 C 1.37904 * 132.97189 * 179.97438 * 21 20 19 23 23 N 1.33458 * 107.66184 * 180.02562 * 22 21 20 24 24 C 1.30747 * 109.93029 * 359.97438 * 23 22 21 25 25 N 1.35914 * 109.21174 * 0.02562 * 24 23 22 26 26 C 1.36323 * 120.16586 * 230.05393 * 18 16 15 27 27 C 1.46934 * 118.73467 * 306.39010 * 15 14 13 28 28 H 0.96996 * 120.00593 * 359.73400 * 1 2 3 29 29 H 0.97000 * 119.99934 * 0.02562 * 9 7 2 30 30 H 1.08999 * 109.46713 * 301.34289 * 12 10 9 31 31 H 1.09000 * 109.45985 * 61.31779 * 12 10 9 32 32 H 1.09007 * 109.49303 * 58.59185 * 13 12 10 33 33 H 1.09000 * 109.50267 * 178.65220 * 13 12 10 34 34 H 1.09004 * 109.59081 * 174.41963 * 14 13 12 35 35 H 1.08996 * 109.58696 * 294.84657 * 14 13 12 36 36 H 1.07997 * 120.48037 * 359.97438 * 19 18 16 37 37 H 1.08007 * 120.28742 * 179.97438 * 20 19 18 38 38 H 1.07994 * 126.17326 * 359.97438 * 22 21 20 39 39 H 1.07999 * 125.38984 * 180.02562 * 24 23 22 40 40 H 1.07995 * 119.74514 * 359.97438 * 26 18 16 41 41 H 1.08997 * 109.58380 * 293.82184 * 27 15 14 42 42 H 1.09000 * 109.58474 * 173.40054 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4918 2.0498 -1.4001 5 1 1.4504 2.6510 0.7058 6 1 3.5506 1.4386 0.6942 7 6 2.0103 -1.2021 -0.0057 8 1 1.4703 -2.1374 -0.0057 9 7 3.3797 -1.2021 -0.0114 10 6 4.1122 -2.4708 -0.0168 11 1 3.5622 -3.2058 -0.6045 12 6 5.4973 -2.2581 -0.6319 13 6 6.2512 -3.5894 -0.6681 14 6 6.4315 -4.1087 0.7617 15 7 5.1144 -4.1784 1.4092 16 6 4.6907 -5.3222 1.9824 17 8 3.6291 -5.3485 2.5750 18 6 5.5147 -6.5425 1.8909 19 6 6.9354 -6.4997 2.2456 20 6 7.6711 -7.6343 2.1537 21 6 7.0541 -8.8280 1.7191 22 6 7.5211 -10.1111 1.5259 23 7 6.4979 -10.8545 1.0997 24 6 5.4193 -10.1206 1.0136 25 7 5.7131 -8.8478 1.3889 26 6 4.9565 -7.7168 1.4812 27 6 4.2683 -2.9772 1.4204 28 1 -0.4851 0.8399 0.0039 29 1 3.8646 -0.3620 -0.0110 30 1 5.3893 -1.8742 -1.6463 31 1 6.0558 -1.5412 -0.0299 32 1 5.6812 -4.3144 -1.2493 33 1 7.2283 -3.4420 -1.1281 34 1 6.8791 -5.1023 0.7360 35 1 7.0769 -3.4293 1.3185 36 1 7.3901 -5.5774 2.5757 37 1 8.7203 -7.6254 2.4098 38 1 8.5325 -10.4527 1.6893 39 1 4.4485 -10.4704 0.6947 40 1 3.9082 -7.7509 1.2240 41 1 4.7373 -2.2056 2.0309 42 1 3.2886 -3.2243 1.8293 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999703338.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:49 Heat of formation + Delta-G solvation = 56.583640 kcal Electronic energy + Delta-G solvation = -25707.214661 eV Core-core repulsion = 22074.238389 eV Total energy + Delta-G solvation = -3632.976272 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.73972 -41.41735 -38.96047 -37.90380 -36.37025 -34.52826 -33.97481 -32.95533 -32.19727 -30.36721 -29.20140 -26.97930 -25.77204 -24.85217 -23.91684 -23.11709 -22.84169 -21.94294 -20.45978 -19.55704 -19.18232 -18.35788 -17.50994 -17.22588 -16.92778 -16.66672 -16.36001 -16.00298 -15.66867 -15.52276 -15.40239 -15.13482 -14.87994 -14.44832 -14.30765 -14.06349 -13.92552 -13.87009 -13.40440 -12.99091 -12.88661 -12.72199 -12.53373 -12.18262 -12.00171 -11.93594 -11.84863 -11.59240 -11.38227 -11.36131 -11.21366 -11.05908 -10.32542 -9.89195 -9.29623 -8.58585 -8.05360 -5.41755 -0.35995 0.02197 1.24281 1.36755 1.42281 1.49396 1.56885 1.91935 2.05003 2.35107 2.46774 3.25197 3.26453 3.39056 3.51185 3.66868 3.70578 3.85351 3.90433 3.93869 4.03844 4.09902 4.23443 4.34236 4.42163 4.53268 4.59044 4.68040 4.79571 4.82813 4.89412 4.92369 4.99648 5.09981 5.12532 5.34763 5.40719 5.43478 5.46378 5.58734 5.73089 6.03604 6.18110 6.29792 6.80419 6.95292 7.04155 7.76487 7.98260 9.16361 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.027235 B = 0.002965 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.855873 B = 9440.624501 C = 9900.232311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.065 4.065 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.238 4.238 8 H 0.045 0.955 9 N -0.743 5.743 10 C 0.169 3.831 11 H 0.030 0.970 12 C -0.122 4.122 13 C -0.123 4.123 14 C 0.093 3.907 15 N -0.591 5.591 16 C 0.561 3.439 17 O -0.585 6.585 18 C -0.142 4.142 19 C -0.109 4.109 20 C -0.059 4.059 21 C -0.015 4.015 22 C -0.024 4.024 23 N -0.483 5.483 24 C 0.146 3.854 25 N -0.380 5.380 26 C 0.105 3.895 27 C 0.105 3.895 28 H 0.259 0.741 29 H 0.371 0.629 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.056 0.944 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.100 0.900 36 H 0.170 0.830 37 H 0.192 0.808 38 H 0.207 0.793 39 H 0.237 0.763 40 H 0.173 0.827 41 H 0.074 0.926 42 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.924 -14.905 1.708 29.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.257 4.257 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.225 1.225 6 H -0.168 1.168 7 C -0.369 4.369 8 H 0.063 0.937 9 N -0.386 5.386 10 C 0.060 3.940 11 H 0.049 0.951 12 C -0.160 4.160 13 C -0.161 4.161 14 C -0.028 4.028 15 N -0.322 5.322 16 C 0.349 3.651 17 O -0.466 6.466 18 C -0.148 4.148 19 C -0.129 4.129 20 C -0.078 4.078 21 C -0.122 4.122 22 C -0.176 4.176 23 N -0.197 5.197 24 C -0.128 4.128 25 N -0.052 5.052 26 C -0.018 4.018 27 C -0.021 4.021 28 H 0.068 0.932 29 H 0.205 0.795 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.074 0.926 33 H 0.133 0.867 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.188 0.812 37 H 0.209 0.791 38 H 0.224 0.776 39 H 0.253 0.747 40 H 0.190 0.810 41 H 0.093 0.907 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 24.087 -15.884 1.744 28.905 hybrid contribution -1.168 1.870 0.250 2.219 sum 22.919 -14.014 1.994 26.938 Atomic orbital electron populations 1.69912 1.07492 1.26909 1.59224 1.25628 0.96173 1.01737 1.02119 0.85301 0.78755 0.78745 0.78274 1.20068 1.22523 1.16802 1.18952 0.82748 0.93130 1.42024 0.93673 1.42649 1.02304 1.03762 1.89904 1.20638 0.93242 0.87075 0.93036 0.95139 1.21810 0.93644 0.99040 1.01508 1.21880 1.02199 0.95686 0.96371 1.22449 0.82318 1.04505 0.93497 1.48163 1.19447 1.09952 1.54625 1.18315 0.84636 0.83632 0.78493 1.90844 1.25605 1.85519 1.44611 1.20256 0.96151 0.91901 1.06540 1.22279 0.89352 1.00677 1.00585 1.20851 1.02126 0.87591 0.97221 1.20233 0.84010 0.98829 1.09135 1.23105 1.00122 0.87848 1.06520 1.70000 0.99579 1.33180 1.16946 1.25798 1.01737 0.77861 1.07439 1.43030 1.09862 1.08967 1.43380 1.21524 0.97432 0.83617 0.99181 1.22284 0.94229 0.85688 0.99865 0.93248 0.79473 0.91314 0.90117 0.92564 0.86717 0.86960 0.88145 0.81248 0.79106 0.77607 0.74655 0.81006 0.90739 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.15 13.97 21.65 0.30 -63.84 16 2 C -0.07 -3.86 5.50 84.86 0.47 -3.39 16 3 Si 0.96 44.59 27.74 68.60 1.90 46.49 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.24 -9.85 6.52 99.48 0.65 -9.20 16 7 C -0.24 -13.68 10.41 84.04 0.88 -12.80 16 8 H 0.05 2.95 8.06 -2.91 -0.02 2.92 16 9 N -0.74 -33.56 4.93 -322.59 -1.59 -35.15 16 10 C 0.17 6.13 2.92 45.07 0.13 6.26 16 11 H 0.03 1.27 8.08 -2.39 -0.02 1.25 16 12 C -0.12 -2.95 5.35 30.62 0.16 -2.79 16 13 C -0.12 -2.05 6.08 30.67 0.19 -1.86 16 14 C 0.09 1.45 5.40 86.36 0.47 1.91 16 15 N -0.59 -15.65 2.97 -822.68 -2.45 -18.09 16 16 C 0.56 16.60 7.24 86.69 0.63 17.23 16 17 O -0.58 -23.61 16.45 -4.03 -0.07 -23.68 16 18 C -0.14 -3.00 5.06 -19.12 -0.10 -3.10 16 19 C -0.11 -1.44 7.60 23.80 0.18 -1.26 16 20 C -0.06 -0.64 10.09 22.38 0.23 -0.42 16 21 C -0.01 -0.24 6.78 38.81 0.26 0.02 16 22 C -0.02 -0.40 12.00 84.37 1.01 0.61 16 23 N -0.48 -10.16 11.19 -197.52 -2.21 -12.37 16 24 C 0.15 2.69 12.76 179.91 2.30 4.99 16 25 N -0.38 -7.28 2.94 -349.87 -1.03 -8.31 16 26 C 0.10 2.17 10.59 83.54 0.89 3.05 16 27 C 0.10 3.66 6.01 86.36 0.52 4.18 16 28 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 29 H 0.37 15.52 5.66 -92.71 -0.52 14.99 16 30 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.11 1.30 4.50 -2.38 -0.01 1.28 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.17 1.38 7.17 -2.91 -0.02 1.36 16 37 H 0.19 0.52 8.06 -2.91 -0.02 0.50 16 38 H 0.21 2.08 8.06 -2.91 -0.02 2.06 16 39 H 0.24 2.74 8.06 -2.91 -0.02 2.72 16 40 H 0.17 3.44 8.06 -2.91 -0.02 3.42 16 41 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 42 H 0.05 2.11 7.02 -2.39 -0.02 2.10 16 Total: -1.00 -83.24 344.62 3.53 -79.71 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.47 Total: 22.61 kcal Atomic # 6 Polarization: 4.44 SS G_CDS: 8.20 Total: 12.64 kcal Atomic # 7 Polarization: -130.80 SS G_CDS: -6.97 Total: -137.77 kcal Atomic # 8 Polarization: -23.61 SS G_CDS: -0.07 Total: -23.68 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.90 Total: 46.49 kcal Total: -83.24 3.53 -79.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999703338.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.294 kcal (2) G-P(sol) polarization free energy of solvation -83.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds