Wall clock time and date at job start Fri Apr 10 2020 23:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48506 * 109.47021 * 239.99852 * 3 2 1 5 5 H 1.48498 * 109.47211 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46998 * 119.99859 * 3 2 1 7 7 C 1.38812 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00614 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00147 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.49568 * 324.93037 * 10 9 7 12 12 C 1.53039 * 109.52345 * 204.85330 * 10 9 7 13 13 C 1.53039 * 109.54122 * 178.66236 * 12 10 9 14 14 C 1.52769 * 109.38091 * 61.24028 * 13 12 10 15 15 N 1.46925 * 109.00671 * 305.59081 * 14 13 12 16 16 C 1.34774 * 120.63178 * 233.58234 * 15 14 13 17 17 O 1.21597 * 120.00118 * 183.87785 * 16 15 14 18 18 C 1.47473 * 119.99976 * 3.87211 * 16 15 14 19 19 C 1.39005 * 120.29195 * 305.96367 * 18 16 15 20 20 C 1.38505 * 120.36873 * 179.90485 * 19 18 16 21 21 C 1.37826 * 120.78586 * 359.58600 * 20 19 18 22 22 C 1.39215 * 120.20185 * 359.97438 * 21 20 19 23 23 N 1.37211 * 133.65449 * 180.02562 * 22 21 20 24 24 H 0.97010 * 125.98107 * 0.02562 * 23 22 21 25 25 N 1.40031 * 108.03902 * 179.74001 * 23 22 21 26 26 C 1.30272 * 109.69805 * 0.26960 * 25 23 22 27 27 C 1.40685 * 119.78836 * 0.19181 * 22 21 20 28 28 C 1.46924 * 118.73942 * 53.30575 * 15 14 13 29 29 H 0.96995 * 120.00119 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00018 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46332 * 298.68531 * 12 10 9 32 32 H 1.09003 * 109.46097 * 58.64508 * 12 10 9 33 33 H 1.08992 * 109.50348 * 181.31181 * 13 12 10 34 34 H 1.08997 * 109.49985 * 301.39093 * 13 12 10 35 35 H 1.08994 * 109.51397 * 185.70817 * 14 13 12 36 36 H 1.09005 * 109.42821 * 65.42223 * 14 13 12 37 37 H 1.08010 * 119.81871 * 359.49116 * 19 18 16 38 38 H 1.07993 * 119.60891 * 179.60400 * 20 19 18 39 39 H 1.08006 * 119.90203 * 180.02562 * 21 20 19 40 40 H 1.07997 * 125.64292 * 180.02562 * 26 25 23 41 41 H 1.09001 * 109.58840 * 66.43448 * 28 15 14 42 42 H 1.09004 * 109.58935 * 186.85309 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9688 -3.5516 -0.5881 12 6 1.1808 -4.7544 -0.6048 13 6 1.9576 -6.0727 -0.6344 14 6 2.3226 -6.4781 0.7926 15 7 3.0395 -5.3691 1.4366 16 6 4.2436 -5.5695 2.0080 17 8 4.7949 -4.6610 2.5990 18 6 4.8925 -6.8906 1.9164 19 6 4.2166 -8.0338 2.3270 20 6 4.8238 -9.2756 2.2399 21 6 6.1014 -9.4025 1.7386 22 6 6.8008 -8.2774 1.3108 23 7 8.0510 -8.0848 0.7792 24 1 8.7074 -8.7766 0.6012 25 7 8.2110 -6.7158 0.5323 26 6 7.1337 -6.0763 0.8896 27 6 6.2010 -7.0077 1.3952 28 6 2.4217 -4.0361 1.4406 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0005 31 1 0.2819 -4.8762 -0.0005 32 1 0.9003 -4.4754 -1.6205 33 1 1.3407 -6.8485 -1.0876 34 1 2.8690 -5.9449 -1.2184 35 1 2.9615 -7.3609 0.7681 36 1 1.4127 -6.6983 1.3510 37 1 3.2147 -7.9524 2.7224 38 1 4.2897 -10.1549 2.5683 39 1 6.5610 -10.3779 1.6768 40 1 6.9795 -5.0103 0.8113 41 1 1.5201 -4.0530 2.0529 42 1 3.1258 -3.3081 1.8436 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999863409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:52 Heat of formation + Delta-G solvation = 72.637338 kcal Electronic energy + Delta-G solvation = -25978.763621 eV Core-core repulsion = 22346.483489 eV Total energy + Delta-G solvation = -3632.280132 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.77342 -39.92195 -37.45774 -37.01173 -34.47386 -32.86540 -32.22990 -31.19733 -30.25253 -29.91394 -28.12315 -25.65368 -24.02280 -23.51901 -22.76765 -21.93981 -21.77195 -20.47200 -19.27965 -17.78626 -17.34184 -17.06894 -16.41430 -15.70856 -15.45892 -15.25422 -14.97119 -14.86174 -14.38357 -14.14954 -13.84927 -13.81020 -13.38925 -13.37233 -12.73460 -12.45227 -12.39761 -12.20862 -11.98578 -11.92140 -11.30258 -11.16459 -11.02446 -10.81282 -10.67243 -10.57931 -10.52580 -10.22408 -9.82992 -9.78764 -9.58022 -9.06480 -8.94735 -8.38124 -8.25166 -6.99622 -5.77821 -3.07705 0.38564 1.12812 2.29496 2.43768 2.75386 3.11859 3.47296 3.51050 3.52305 3.53249 4.23319 4.43548 4.57602 4.59427 4.66982 4.74500 4.94197 4.96659 5.11751 5.23926 5.37982 5.40643 5.49146 5.56037 5.57299 5.66831 5.80968 5.90987 5.96175 6.04818 6.06332 6.13499 6.18153 6.22394 6.35907 6.42645 6.49242 6.72535 6.82821 6.98544 7.00635 7.31218 7.60732 7.72162 8.30085 8.40594 9.52220 10.05992 10.41234 11.44375 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.003507 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.085227 B = 7982.894275 C = 8858.514079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.010 4.010 3 Si 0.907 3.093 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.244 4.244 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.130 4.130 14 C 0.097 3.903 15 N -0.595 5.595 16 C 0.551 3.449 17 O -0.530 6.530 18 C -0.033 4.033 19 C -0.131 4.131 20 C -0.071 4.071 21 C -0.131 4.131 22 C 0.125 3.875 23 N -0.509 5.509 24 H 0.441 0.559 25 N -0.249 5.249 26 C 0.088 3.912 27 C -0.140 4.140 28 C 0.092 3.908 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.129 0.871 40 H 0.196 0.804 41 H 0.064 0.936 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.450 -24.153 1.865 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.206 4.206 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.375 4.375 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.026 4.026 15 N -0.328 5.328 16 C 0.338 3.662 17 O -0.407 6.407 18 C -0.039 4.039 19 C -0.151 4.151 20 C -0.091 4.091 21 C -0.153 4.153 22 C 0.008 3.992 23 N -0.224 5.224 24 H 0.286 0.714 25 N -0.063 5.063 26 C -0.107 4.107 27 C -0.149 4.149 28 C -0.032 4.032 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.147 0.853 40 H 0.213 0.787 41 H 0.082 0.918 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.048 -23.334 1.646 25.458 hybrid contribution -0.357 0.444 0.292 0.640 sum 9.691 -22.889 1.938 24.932 Atomic orbital electron populations 1.69647 1.05133 1.25897 1.57377 1.24737 0.95499 0.97738 1.02596 0.86272 0.78574 0.83383 0.78023 1.21195 1.21692 1.21064 1.19229 0.91085 0.83976 1.43192 0.91066 1.42368 1.05801 0.99555 1.88091 1.20488 0.94962 0.86477 0.92349 0.93113 1.21829 0.98686 0.94112 1.01839 1.21806 1.00891 0.98212 0.95974 1.21921 0.97057 0.89654 0.93919 1.48233 1.18272 1.11396 1.54897 1.18236 0.81116 0.87366 0.79519 1.90830 1.63950 1.43649 1.42241 1.19502 0.92376 0.93923 0.98144 1.21128 1.00435 0.91143 1.02370 1.20890 0.93761 0.97524 0.96967 1.20157 0.95297 0.96004 1.03838 1.18797 0.87177 0.95435 0.97806 1.46106 1.13035 1.06523 1.56765 0.71380 1.76814 1.22630 0.87575 1.19315 1.24037 0.89512 1.00828 0.96358 1.18642 0.95515 0.92718 1.07995 1.22856 0.97912 0.81261 1.01192 0.93407 0.78053 0.91997 0.91416 0.90969 0.91657 0.89432 0.91229 0.84671 0.84535 0.85317 0.78682 0.91812 0.88998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.91 13.06 55.49 0.72 -27.19 16 2 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 3 Si 0.91 22.62 29.55 -169.99 -5.02 17.59 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 7 C -0.24 -6.76 9.93 -15.06 -0.15 -6.91 16 8 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.72 -17.62 5.13 -53.31 -0.27 -17.90 16 10 C 0.17 3.28 2.92 -67.82 -0.20 3.08 16 11 H 0.05 1.06 8.08 -51.93 -0.42 0.64 16 12 C -0.13 -1.94 5.36 -26.69 -0.14 -2.08 16 13 C -0.13 -1.53 6.07 -26.83 -0.16 -1.70 16 14 C 0.10 1.09 5.50 -3.93 -0.02 1.07 16 15 N -0.60 -8.98 2.98 -174.28 -0.52 -9.50 16 16 C 0.55 8.84 7.06 -12.50 -0.09 8.75 16 17 O -0.53 -10.59 16.52 5.28 0.09 -10.50 16 18 C -0.03 -0.43 4.91 -104.67 -0.51 -0.94 16 19 C -0.13 -1.24 7.39 -39.20 -0.29 -1.52 16 20 C -0.07 -0.51 10.00 -39.63 -0.40 -0.91 16 21 C -0.13 -1.01 10.06 -39.37 -0.40 -1.41 16 22 C 0.13 1.32 7.32 -84.17 -0.62 0.70 16 23 N -0.51 -5.09 7.45 32.35 0.24 -4.85 16 24 H 0.44 2.82 8.96 -182.64 -1.64 1.18 16 25 N -0.25 -3.20 12.58 30.81 0.39 -2.81 16 26 C 0.09 1.20 11.84 -17.10 -0.20 0.99 16 27 C -0.14 -1.83 6.01 -106.68 -0.64 -2.47 16 28 C 0.09 1.71 6.01 -3.72 -0.02 1.68 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.39 9.95 7.80 -40.82 -0.32 9.63 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 35 H 0.09 0.83 4.74 -51.93 -0.25 0.58 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.14 1.07 7.38 -52.48 -0.39 0.69 16 38 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 39 H 0.13 0.61 8.06 -52.48 -0.42 0.19 16 40 H 0.20 2.57 8.06 -52.49 -0.42 2.15 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.09 2.00 7.03 -51.93 -0.36 1.63 16 LS Contribution 347.59 15.07 5.24 5.24 Total: -1.00 -33.92 347.59 -9.80 -43.72 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -6.72 Total: 8.19 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -3.94 Total: -2.00 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.56 Total: -62.24 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.92 -9.80 -43.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999863409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.357 kcal (2) G-P(sol) polarization free energy of solvation -33.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds