Wall clock time and date at job start Fri Apr 10 2020 23:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86799 * 120.00029 * 2 1 4 4 H 1.48506 * 109.47021 * 239.99852 * 3 2 1 5 5 H 1.48498 * 109.47211 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.46998 * 119.99859 * 3 2 1 7 7 C 1.38812 * 120.00160 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00614 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99989 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00147 * 180.02562 * 9 7 2 11 11 H 1.09005 * 109.49568 * 324.93037 * 10 9 7 12 12 C 1.53039 * 109.52345 * 204.85330 * 10 9 7 13 13 C 1.53039 * 109.54122 * 178.66236 * 12 10 9 14 14 C 1.52769 * 109.38091 * 61.24028 * 13 12 10 15 15 N 1.46925 * 109.00671 * 305.59081 * 14 13 12 16 16 C 1.34774 * 120.63178 * 233.58234 * 15 14 13 17 17 O 1.21597 * 120.00118 * 183.87785 * 16 15 14 18 18 C 1.47473 * 119.99976 * 3.87211 * 16 15 14 19 19 C 1.39005 * 120.29195 * 305.96367 * 18 16 15 20 20 C 1.38505 * 120.36873 * 179.90485 * 19 18 16 21 21 C 1.37826 * 120.78586 * 359.58600 * 20 19 18 22 22 C 1.39215 * 120.20185 * 359.97438 * 21 20 19 23 23 N 1.37211 * 133.65449 * 180.02562 * 22 21 20 24 24 H 0.97010 * 125.98107 * 0.02562 * 23 22 21 25 25 N 1.40031 * 108.03902 * 179.74001 * 23 22 21 26 26 C 1.30272 * 109.69805 * 0.26960 * 25 23 22 27 27 C 1.40685 * 119.78836 * 0.19181 * 22 21 20 28 28 C 1.46924 * 118.73942 * 53.30575 * 15 14 13 29 29 H 0.96995 * 120.00119 * 359.97438 * 1 2 3 30 30 H 0.96999 * 120.00018 * 359.97438 * 9 7 2 31 31 H 1.08996 * 109.46332 * 298.68531 * 12 10 9 32 32 H 1.09003 * 109.46097 * 58.64508 * 12 10 9 33 33 H 1.08992 * 109.50348 * 181.31181 * 13 12 10 34 34 H 1.08997 * 109.49985 * 301.39093 * 13 12 10 35 35 H 1.08994 * 109.51397 * 185.70817 * 14 13 12 36 36 H 1.09005 * 109.42821 * 65.42223 * 14 13 12 37 37 H 1.08010 * 119.81871 * 359.49116 * 19 18 16 38 38 H 1.07993 * 119.60891 * 179.60400 * 20 19 18 39 39 H 1.08006 * 119.90203 * 180.02562 * 21 20 19 40 40 H 1.07997 * 125.64292 * 180.02562 * 26 25 23 41 41 H 1.09001 * 109.58840 * 66.43448 * 28 15 14 42 42 H 1.09004 * 109.58935 * 186.85309 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9688 -3.5516 -0.5881 12 6 1.1808 -4.7544 -0.6048 13 6 1.9576 -6.0727 -0.6344 14 6 2.3226 -6.4781 0.7926 15 7 3.0395 -5.3691 1.4366 16 6 4.2436 -5.5695 2.0080 17 8 4.7949 -4.6610 2.5990 18 6 4.8925 -6.8906 1.9164 19 6 4.2166 -8.0338 2.3270 20 6 4.8238 -9.2756 2.2399 21 6 6.1014 -9.4025 1.7386 22 6 6.8008 -8.2774 1.3108 23 7 8.0510 -8.0848 0.7792 24 1 8.7074 -8.7766 0.6012 25 7 8.2110 -6.7158 0.5323 26 6 7.1337 -6.0763 0.8896 27 6 6.2010 -7.0077 1.3952 28 6 2.4217 -4.0361 1.4406 29 1 -0.4850 0.8400 0.0004 30 1 0.3556 -2.3881 0.0005 31 1 0.2819 -4.8762 -0.0005 32 1 0.9003 -4.4754 -1.6205 33 1 1.3407 -6.8485 -1.0876 34 1 2.8690 -5.9449 -1.2184 35 1 2.9615 -7.3609 0.7681 36 1 1.4127 -6.6983 1.3510 37 1 3.2147 -7.9524 2.7224 38 1 4.2897 -10.1549 2.5683 39 1 6.5610 -10.3779 1.6768 40 1 6.9795 -5.0103 0.8113 41 1 1.5201 -4.0530 2.0529 42 1 3.1258 -3.3081 1.8436 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999863409.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:52 Heat of formation + Delta-G solvation = 48.720516 kcal Electronic energy + Delta-G solvation = -25979.800732 eV Core-core repulsion = 22346.483489 eV Total energy + Delta-G solvation = -3633.317243 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.62542 -41.12797 -38.73741 -37.93611 -36.19144 -34.06614 -33.48565 -32.75257 -31.14380 -30.84765 -29.67867 -26.83783 -25.87552 -24.50668 -23.59656 -23.24345 -22.74816 -21.74841 -20.49211 -19.16567 -18.81360 -18.15099 -17.47346 -16.81807 -16.72624 -16.39142 -16.03750 -15.86740 -15.71304 -15.48698 -15.38457 -15.03396 -14.79313 -14.52350 -14.03946 -13.87221 -13.70197 -13.17220 -12.92567 -12.90317 -12.77423 -12.69785 -12.43687 -12.25347 -12.07177 -11.97607 -11.88550 -11.65378 -11.44094 -11.33466 -11.10407 -10.85256 -9.79768 -9.69533 -9.05512 -9.00867 -7.98587 -5.27613 -0.42488 0.39681 1.33514 1.44330 1.46909 1.53075 1.58866 1.73850 1.98569 2.53636 2.70907 3.32068 3.34782 3.59795 3.76098 3.80150 3.89967 4.01875 4.05348 4.09936 4.24511 4.32257 4.35943 4.39913 4.57437 4.63932 4.69562 4.77949 4.86518 4.88903 4.92940 5.06141 5.14959 5.23629 5.31267 5.38026 5.40223 5.43921 5.47290 5.57525 5.75151 6.24236 6.28503 6.40962 6.50367 7.08069 7.31087 8.03166 8.28803 9.23861 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018403 B = 0.003507 C = 0.003160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.085227 B = 7982.894275 C = 8858.514079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.065 4.065 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.284 1.284 7 C -0.247 4.247 8 H 0.064 0.936 9 N -0.728 5.728 10 C 0.167 3.833 11 H 0.028 0.972 12 C -0.118 4.118 13 C -0.122 4.122 14 C 0.094 3.906 15 N -0.593 5.593 16 C 0.548 3.452 17 O -0.586 6.586 18 C -0.065 4.065 19 C -0.114 4.114 20 C -0.059 4.059 21 C -0.112 4.112 22 C 0.119 3.881 23 N -0.495 5.495 24 H 0.457 0.543 25 N -0.267 5.267 26 C 0.061 3.939 27 C -0.167 4.167 28 C 0.107 3.893 29 H 0.253 0.747 30 H 0.378 0.622 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.055 0.945 35 H 0.115 0.885 36 H 0.095 0.905 37 H 0.155 0.845 38 H 0.184 0.816 39 H 0.170 0.830 40 H 0.179 0.821 41 H 0.064 0.936 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.230 -28.835 1.990 30.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.258 4.258 3 Si 0.795 3.205 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.369 5.369 10 C 0.058 3.942 11 H 0.047 0.953 12 C -0.156 4.156 13 C -0.160 4.160 14 C -0.027 4.027 15 N -0.325 5.325 16 C 0.337 3.663 17 O -0.467 6.467 18 C -0.071 4.071 19 C -0.134 4.134 20 C -0.079 4.079 21 C -0.134 4.134 22 C 0.001 3.999 23 N -0.213 5.213 24 H 0.305 0.695 25 N -0.082 5.082 26 C -0.134 4.134 27 C -0.176 4.176 28 C -0.018 4.018 29 H 0.062 0.938 30 H 0.211 0.789 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.074 0.926 35 H 0.133 0.867 36 H 0.113 0.887 37 H 0.173 0.827 38 H 0.201 0.799 39 H 0.187 0.813 40 H 0.196 0.804 41 H 0.082 0.918 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 9.850 -28.092 1.748 29.820 hybrid contribution -0.234 1.726 0.271 1.763 sum 9.616 -26.366 2.019 28.137 Atomic orbital electron populations 1.69773 1.06267 1.26260 1.58986 1.25449 0.96366 1.00687 1.03312 0.85330 0.77418 0.79715 0.78038 1.20450 1.21477 1.20996 1.19479 0.91029 0.85527 1.41865 0.91778 1.42488 1.05536 1.00529 1.88297 1.20643 0.94621 0.86156 0.92829 0.95346 1.21739 0.98548 0.94349 1.00960 1.21799 1.00576 0.96997 0.96629 1.22281 0.98168 0.88874 0.93381 1.48239 1.18420 1.10850 1.54963 1.18880 0.80727 0.88388 0.78265 1.90787 1.65208 1.45956 1.44709 1.19251 0.92880 0.92921 1.02044 1.21482 1.00989 0.90804 1.00159 1.21407 0.93465 0.97831 0.95246 1.20727 0.95090 0.96508 1.01076 1.19114 0.87090 0.95446 0.98202 1.46076 1.13497 1.05767 1.55928 0.69480 1.76703 1.22586 0.89230 1.19724 1.23908 0.90713 1.00665 0.98077 1.18803 0.95881 0.93748 1.09136 1.22266 0.96840 0.82808 0.99899 0.93783 0.78909 0.91037 0.92149 0.86877 0.92615 0.86728 0.88672 0.82744 0.79876 0.81276 0.80440 0.91772 0.93314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.14 13.06 21.65 0.28 -58.86 16 2 C -0.07 -3.83 5.50 84.86 0.47 -3.37 16 3 Si 0.97 47.84 29.55 68.60 2.03 49.86 16 4 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 5 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 6 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 7 C -0.25 -14.29 9.93 84.03 0.83 -13.45 16 8 H 0.06 3.71 7.83 -2.91 -0.02 3.69 16 9 N -0.73 -37.31 5.13 -322.58 -1.65 -38.96 16 10 C 0.17 6.79 2.92 45.07 0.13 6.92 16 11 H 0.03 1.27 8.08 -2.38 -0.02 1.25 16 12 C -0.12 -3.52 5.36 30.62 0.16 -3.35 16 13 C -0.12 -2.54 6.07 30.53 0.19 -2.35 16 14 C 0.09 1.83 5.50 86.22 0.47 2.30 16 15 N -0.59 -17.97 2.98 -823.56 -2.45 -20.43 16 16 C 0.55 18.22 7.06 86.68 0.61 18.83 16 17 O -0.59 -25.38 16.52 -4.02 -0.07 -25.45 16 18 C -0.06 -1.60 4.91 -19.90 -0.10 -1.70 16 19 C -0.11 -1.70 7.39 22.52 0.17 -1.53 16 20 C -0.06 -0.49 10.00 22.24 0.22 -0.27 16 21 C -0.11 -1.13 10.06 22.41 0.23 -0.90 16 22 C 0.12 2.21 7.32 39.13 0.29 2.49 16 23 N -0.49 -9.11 7.45 -51.56 -0.38 -9.49 16 24 H 0.46 4.77 8.96 -213.35 -1.91 2.85 16 25 N -0.27 -7.02 12.58 -56.45 -0.71 -7.73 16 26 C 0.06 1.77 11.84 85.64 1.01 2.79 16 27 C -0.17 -4.32 6.01 -21.20 -0.13 -4.45 16 28 C 0.11 4.19 6.01 86.36 0.52 4.71 16 29 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.38 20.22 7.80 -92.71 -0.72 19.50 16 31 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.11 1.68 4.74 -2.39 -0.01 1.67 16 36 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 37 H 0.15 1.68 7.38 -2.91 -0.02 1.66 16 38 H 0.18 -0.04 8.06 -2.91 -0.02 -0.06 16 39 H 0.17 0.40 8.06 -2.91 -0.02 0.37 16 40 H 0.18 5.48 8.06 -2.91 -0.02 5.45 16 41 H 0.06 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.05 2.31 7.03 -2.39 -0.02 2.29 16 Total: -1.00 -80.60 347.59 0.56 -80.05 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -1.56 Total: 24.34 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: 5.08 Total: 6.67 kcal Atomic # 7 Polarization: -130.56 SS G_CDS: -4.92 Total: -135.48 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.07 Total: -25.45 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 2.03 Total: 49.86 kcal Total: -80.60 0.56 -80.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999863409.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.766 kcal (2) G-P(sol) polarization free energy of solvation -80.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds