Wall clock time and date at job start Fri Apr 10 2020 23:00:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99813 * 2 1 4 4 H 1.48497 * 109.47209 * 270.27715 * 3 2 1 5 5 H 1.48499 * 109.46871 * 30.27844 * 3 2 1 6 6 H 1.48506 * 109.46847 * 150.27744 * 3 2 1 7 7 C 1.38813 * 120.00235 * 180.28013 * 2 1 3 8 8 H 1.08006 * 120.00039 * 179.72613 * 7 2 1 9 9 N 1.36931 * 119.99996 * 359.72103 * 7 2 1 10 10 C 1.46504 * 120.00326 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49500 * 34.93269 * 10 9 7 12 12 C 1.53036 * 109.50205 * 154.99945 * 10 9 7 13 13 C 1.53034 * 109.53985 * 181.31546 * 12 10 9 14 14 C 1.53192 * 109.31382 * 298.63470 * 13 12 10 15 15 N 1.46926 * 108.77486 * 54.63417 * 14 13 12 16 16 C 1.34777 * 120.62832 * 126.36769 * 15 14 13 17 17 O 1.21603 * 120.00097 * 354.19141 * 16 15 14 18 18 C 1.47472 * 119.99800 * 174.18976 * 16 15 14 19 19 C 1.39009 * 120.29011 * 306.18698 * 18 16 15 20 20 C 1.38504 * 120.36096 * 180.02562 * 19 18 16 21 21 C 1.37826 * 120.79354 * 359.97438 * 20 19 18 22 22 C 1.39215 * 120.19589 * 359.97438 * 21 20 19 23 23 N 1.37214 * 133.64713 * 180.02562 * 22 21 20 24 24 H 0.96998 * 125.98669 * 359.97438 * 23 22 21 25 25 N 1.40032 * 108.03378 * 179.97438 * 23 22 21 26 26 C 1.30263 * 109.70195 * 0.02562 * 25 23 22 27 27 C 1.40681 * 119.79084 * 359.74702 * 22 21 20 28 28 C 1.46922 * 118.73760 * 306.39113 * 15 14 13 29 29 H 0.96996 * 120.00426 * 359.72601 * 1 2 3 30 30 H 0.97007 * 120.00187 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.46229 * 301.33928 * 12 10 9 32 32 H 1.09004 * 109.45935 * 61.30575 * 12 10 9 33 33 H 1.09000 * 109.49900 * 58.58548 * 13 12 10 34 34 H 1.09006 * 109.49528 * 178.65100 * 13 12 10 35 35 H 1.09004 * 109.58816 * 174.42354 * 14 13 12 36 36 H 1.08996 * 109.58468 * 294.84729 * 14 13 12 37 37 H 1.07998 * 119.82023 * 0.02562 * 19 18 16 38 38 H 1.08004 * 119.60246 * 180.02562 * 20 19 18 39 39 H 1.08003 * 119.90296 * 179.97438 * 21 20 19 40 40 H 1.08006 * 125.64391 * 179.97438 * 26 25 23 41 41 H 1.08999 * 109.58829 * 293.82102 * 28 15 14 42 42 H 1.09003 * 109.58721 * 173.39334 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0499 -1.4000 5 1 1.4505 2.6510 0.7059 6 1 3.5507 1.4386 0.6942 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0103 9 7 1.3257 -2.3880 -0.0059 10 6 2.0582 -3.6568 -0.0115 11 1 2.9719 -3.5519 0.5736 12 6 1.1837 -4.7543 0.5990 13 6 1.9600 -6.0728 0.6236 14 6 2.3145 -6.4789 -0.8103 15 7 3.0310 -5.3687 -1.4528 16 6 4.2319 -5.5695 -2.0307 17 8 4.7809 -6.6501 -1.9327 18 6 4.8802 -4.4786 -2.7821 19 6 4.1994 -3.8323 -3.8074 20 6 4.8071 -2.8079 -4.5143 21 6 6.0927 -2.4107 -4.2160 22 6 6.8000 -3.0379 -3.1940 23 7 8.0591 -2.8728 -2.6741 24 1 8.7180 -2.2259 -2.9709 25 7 8.2262 -3.8020 -1.6398 26 6 7.1430 -4.5138 -1.5097 27 6 6.1966 -4.0763 -2.4615 28 6 2.4138 -4.0354 -1.4527 29 1 -0.4850 0.8400 0.0040 30 1 0.3556 -2.3881 -0.0014 31 1 0.9088 -4.4757 1.6164 32 1 0.2815 -4.8753 -0.0006 33 1 2.8749 -5.9457 1.2024 34 1 1.3453 -6.8485 1.0805 35 1 2.9513 -7.3634 -0.7929 36 1 1.4015 -6.6944 -1.3653 37 1 3.1912 -4.1306 -4.0540 38 1 4.2667 -2.3139 -5.3083 39 1 6.5528 -1.6105 -4.7768 40 1 6.9924 -5.3048 -0.7899 41 1 1.5089 -4.0517 -2.0602 42 1 3.1161 -3.3076 -1.8591 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999863411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:55 Heat of formation + Delta-G solvation = 69.166749 kcal Electronic energy + Delta-G solvation = -26472.039049 eV Core-core repulsion = 22839.608421 eV Total energy + Delta-G solvation = -3632.430628 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.57348 -39.88185 -37.39721 -36.87422 -34.30894 -32.94303 -32.20141 -31.29980 -29.99860 -29.53464 -28.20155 -25.53130 -24.08110 -23.51340 -22.56495 -22.00140 -21.41303 -20.44232 -19.29925 -17.63713 -17.17118 -17.08576 -16.38693 -15.59869 -15.34790 -15.09354 -14.81875 -14.80850 -14.36323 -14.08479 -13.90565 -13.59787 -13.49718 -13.28271 -12.68962 -12.51872 -12.35000 -11.98615 -11.77726 -11.73896 -11.35283 -11.05331 -11.01076 -10.88599 -10.65208 -10.54775 -10.37839 -10.28752 -10.00567 -9.73194 -9.63850 -9.12626 -8.71971 -8.39396 -8.05175 -7.05911 -5.85010 -3.14869 0.59484 1.38238 2.46410 2.62042 2.79341 3.16240 3.37651 3.44163 3.45265 3.74407 4.38780 4.53363 4.62789 4.78480 4.87198 4.96231 5.13739 5.18718 5.20084 5.26473 5.42206 5.56810 5.59636 5.64138 5.69341 5.78748 5.79290 5.90609 6.05888 6.11550 6.19040 6.24744 6.31589 6.32433 6.33558 6.35624 6.65182 6.70290 6.76516 6.91865 7.18175 7.48358 7.58260 7.64915 8.27085 8.33441 9.45079 9.99342 10.34834 11.37157 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.005826 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.878821 B = 4804.540915 C = 6649.962405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.008 4.008 3 Si 0.903 3.097 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.070 0.930 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.051 0.949 12 C -0.126 4.126 13 C -0.129 4.129 14 C 0.112 3.888 15 N -0.597 5.597 16 C 0.560 3.440 17 O -0.545 6.545 18 C -0.041 4.041 19 C -0.116 4.116 20 C -0.067 4.067 21 C -0.127 4.127 22 C 0.125 3.875 23 N -0.508 5.508 24 H 0.441 0.559 25 N -0.251 5.251 26 C 0.085 3.915 27 C -0.139 4.139 28 C 0.082 3.918 29 H 0.256 0.744 30 H 0.386 0.614 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.067 0.933 37 H 0.134 0.866 38 H 0.138 0.862 39 H 0.129 0.871 40 H 0.193 0.807 41 H 0.066 0.934 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.257 -9.253 -7.265 14.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.204 4.204 3 Si 0.734 3.266 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.208 1.208 7 C -0.373 4.373 8 H 0.088 0.912 9 N -0.358 5.358 10 C 0.056 3.944 11 H 0.069 0.931 12 C -0.165 4.165 13 C -0.168 4.168 14 C -0.011 4.011 15 N -0.329 5.329 16 C 0.348 3.652 17 O -0.424 6.424 18 C -0.047 4.047 19 C -0.136 4.136 20 C -0.088 4.088 21 C -0.149 4.149 22 C 0.008 3.992 23 N -0.224 5.224 24 H 0.286 0.714 25 N -0.066 5.066 26 C -0.110 4.110 27 C -0.148 4.148 28 C -0.043 4.043 29 H 0.066 0.934 30 H 0.220 0.780 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.107 0.893 36 H 0.085 0.915 37 H 0.152 0.848 38 H 0.156 0.844 39 H 0.147 0.853 40 H 0.210 0.790 41 H 0.084 0.916 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.858 -9.447 -6.715 15.216 hybrid contribution -0.422 1.410 -0.500 1.554 sum 9.436 -8.037 -7.215 14.342 Atomic orbital electron populations 1.69650 1.05078 1.25791 1.57296 1.24717 0.95452 0.97616 1.02649 0.86250 0.78787 0.83961 0.77585 1.21622 1.21696 1.20757 1.19220 0.90962 0.83973 1.43190 0.91219 1.42375 1.05830 0.99498 1.88105 1.20486 0.95123 0.86548 0.92204 0.93096 1.21833 0.98673 0.94173 1.01808 1.21875 1.00843 0.97996 0.96073 1.21615 0.96457 0.89818 0.93162 1.48227 1.18702 1.11322 1.54640 1.18257 0.80763 0.87336 0.78890 1.90759 1.63902 1.26268 1.61478 1.19309 0.92401 0.95983 0.96986 1.21097 0.99985 0.96346 0.96210 1.20909 0.93551 0.95597 0.98746 1.20170 0.95151 1.01759 0.97801 1.18765 0.86926 0.97071 0.96451 1.46036 1.12419 1.33678 1.30248 0.71417 1.76733 1.22953 1.02145 1.04768 1.23894 0.89531 0.98977 0.98618 1.18588 0.95176 1.00345 1.00641 1.23071 0.98238 0.81126 1.01868 0.93408 0.78003 0.91419 0.92001 0.91604 0.90998 0.89280 0.91506 0.84812 0.84435 0.85286 0.79032 0.91588 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.91 13.06 55.49 0.72 -26.18 16 2 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 3 Si 0.90 21.75 29.55 -169.99 -5.02 16.73 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 8 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 9 N -0.72 -16.78 5.12 -53.31 -0.27 -17.05 16 10 C 0.17 3.13 2.92 -67.81 -0.20 2.93 16 11 H 0.05 1.03 8.08 -51.93 -0.42 0.61 16 12 C -0.13 -1.94 5.35 -26.69 -0.14 -2.08 16 13 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 14 C 0.11 1.46 6.44 -3.71 -0.02 1.44 16 15 N -0.60 -8.99 2.97 -174.02 -0.52 -9.51 16 16 C 0.56 9.03 7.03 -12.50 -0.09 8.94 16 17 O -0.55 -9.85 16.49 5.28 0.09 -9.76 16 18 C -0.04 -0.62 4.63 -104.68 -0.48 -1.11 16 19 C -0.12 -1.54 7.75 -39.20 -0.30 -1.84 16 20 C -0.07 -0.77 9.99 -39.63 -0.40 -1.17 16 21 C -0.13 -1.46 10.06 -39.37 -0.40 -1.85 16 22 C 0.12 1.69 7.32 -84.17 -0.62 1.07 16 23 N -0.51 -6.33 7.45 32.35 0.24 -6.09 16 24 H 0.44 3.92 8.96 -182.65 -1.64 2.28 16 25 N -0.25 -3.64 12.58 30.81 0.39 -3.25 16 26 C 0.09 1.27 11.83 -17.10 -0.20 1.06 16 27 C -0.14 -2.13 6.00 -106.69 -0.64 -2.77 16 28 C 0.08 1.36 5.14 -3.71 -0.02 1.34 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 30 H 0.39 9.58 7.80 -40.82 -0.32 9.26 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.18 7.00 -51.93 -0.36 0.82 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.13 1.60 7.74 -52.49 -0.41 1.20 16 38 H 0.14 1.20 8.06 -52.48 -0.42 0.77 16 39 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 40 H 0.19 2.55 8.06 -52.48 -0.42 2.13 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.09 1.58 5.39 -51.93 -0.28 1.30 16 LS Contribution 348.66 15.07 5.25 5.25 Total: -1.00 -31.91 348.66 -9.81 -41.72 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -6.78 Total: 10.84 kcal Atomic # 6 Polarization: 1.22 SS G_CDS: -3.92 Total: -2.70 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: 0.56 Total: -62.08 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.91 -9.81 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999863411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.890 kcal (2) G-P(sol) polarization free energy of solvation -31.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds