Wall clock time and date at job start Fri Apr 10 2020 23:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86809 * 119.99813 * 2 1 4 4 H 1.48497 * 109.47209 * 270.27715 * 3 2 1 5 5 H 1.48499 * 109.46871 * 30.27844 * 3 2 1 6 6 H 1.48506 * 109.46847 * 150.27744 * 3 2 1 7 7 C 1.38813 * 120.00235 * 180.28013 * 2 1 3 8 8 H 1.08006 * 120.00039 * 179.72613 * 7 2 1 9 9 N 1.36931 * 119.99996 * 359.72103 * 7 2 1 10 10 C 1.46504 * 120.00326 * 180.02562 * 9 7 2 11 11 H 1.09001 * 109.49500 * 34.93269 * 10 9 7 12 12 C 1.53036 * 109.50205 * 154.99945 * 10 9 7 13 13 C 1.53034 * 109.53985 * 181.31546 * 12 10 9 14 14 C 1.53192 * 109.31382 * 298.63470 * 13 12 10 15 15 N 1.46926 * 108.77486 * 54.63417 * 14 13 12 16 16 C 1.34777 * 120.62832 * 126.36769 * 15 14 13 17 17 O 1.21603 * 120.00097 * 354.19141 * 16 15 14 18 18 C 1.47472 * 119.99800 * 174.18976 * 16 15 14 19 19 C 1.39009 * 120.29011 * 306.18698 * 18 16 15 20 20 C 1.38504 * 120.36096 * 180.02562 * 19 18 16 21 21 C 1.37826 * 120.79354 * 359.97438 * 20 19 18 22 22 C 1.39215 * 120.19589 * 359.97438 * 21 20 19 23 23 N 1.37214 * 133.64713 * 180.02562 * 22 21 20 24 24 H 0.96998 * 125.98669 * 359.97438 * 23 22 21 25 25 N 1.40032 * 108.03378 * 179.97438 * 23 22 21 26 26 C 1.30263 * 109.70195 * 0.02562 * 25 23 22 27 27 C 1.40681 * 119.79084 * 359.74702 * 22 21 20 28 28 C 1.46922 * 118.73760 * 306.39113 * 15 14 13 29 29 H 0.96996 * 120.00426 * 359.72601 * 1 2 3 30 30 H 0.97007 * 120.00187 * 359.97438 * 9 7 2 31 31 H 1.09006 * 109.46229 * 301.33928 * 12 10 9 32 32 H 1.09004 * 109.45935 * 61.30575 * 12 10 9 33 33 H 1.09000 * 109.49900 * 58.58548 * 13 12 10 34 34 H 1.09006 * 109.49528 * 178.65100 * 13 12 10 35 35 H 1.09004 * 109.58816 * 174.42354 * 14 13 12 36 36 H 1.08996 * 109.58468 * 294.84729 * 14 13 12 37 37 H 1.07998 * 119.82023 * 0.02562 * 19 18 16 38 38 H 1.08004 * 119.60246 * 180.02562 * 20 19 18 39 39 H 1.08003 * 119.90296 * 179.97438 * 21 20 19 40 40 H 1.08006 * 125.64391 * 179.97438 * 26 25 23 41 41 H 1.08999 * 109.58829 * 293.82102 * 28 15 14 42 42 H 1.09003 * 109.58721 * 173.39334 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0499 -1.4000 5 1 1.4505 2.6510 0.7059 6 1 3.5507 1.4386 0.6942 7 6 2.0103 -1.2021 -0.0059 8 1 3.0903 -1.2021 -0.0103 9 7 1.3257 -2.3880 -0.0059 10 6 2.0582 -3.6568 -0.0115 11 1 2.9719 -3.5519 0.5736 12 6 1.1837 -4.7543 0.5990 13 6 1.9600 -6.0728 0.6236 14 6 2.3145 -6.4789 -0.8103 15 7 3.0310 -5.3687 -1.4528 16 6 4.2319 -5.5695 -2.0307 17 8 4.7809 -6.6501 -1.9327 18 6 4.8802 -4.4786 -2.7821 19 6 4.1994 -3.8323 -3.8074 20 6 4.8071 -2.8079 -4.5143 21 6 6.0927 -2.4107 -4.2160 22 6 6.8000 -3.0379 -3.1940 23 7 8.0591 -2.8728 -2.6741 24 1 8.7180 -2.2259 -2.9709 25 7 8.2262 -3.8020 -1.6398 26 6 7.1430 -4.5138 -1.5097 27 6 6.1966 -4.0763 -2.4615 28 6 2.4138 -4.0354 -1.4527 29 1 -0.4850 0.8400 0.0040 30 1 0.3556 -2.3881 -0.0014 31 1 0.9088 -4.4757 1.6164 32 1 0.2815 -4.8753 -0.0006 33 1 2.8749 -5.9457 1.2024 34 1 1.3453 -6.8485 1.0805 35 1 2.9513 -7.3634 -0.7929 36 1 1.4015 -6.6944 -1.3653 37 1 3.1912 -4.1306 -4.0540 38 1 4.2667 -2.3139 -5.3083 39 1 6.5528 -1.6105 -4.7768 40 1 6.9924 -5.3048 -0.7899 41 1 1.5089 -4.0517 -2.0602 42 1 3.1161 -3.3076 -1.8591 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999863411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:54 Heat of formation + Delta-G solvation = 48.598414 kcal Electronic energy + Delta-G solvation = -26472.930959 eV Core-core repulsion = 22839.608421 eV Total energy + Delta-G solvation = -3633.322538 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.61624 -41.11256 -38.72335 -37.93455 -36.01355 -34.11939 -33.54358 -32.85361 -31.02642 -30.61111 -29.80950 -26.73780 -25.88110 -24.67082 -23.58636 -23.25836 -22.57784 -21.78559 -20.49730 -19.11816 -18.76777 -18.17669 -17.53967 -16.76110 -16.72600 -16.39680 -16.02748 -15.87724 -15.66522 -15.47979 -15.39867 -14.96008 -14.85350 -14.51697 -14.03798 -13.88368 -13.62486 -13.12703 -12.95913 -12.89492 -12.74917 -12.70914 -12.47032 -12.20445 -12.09190 -11.95876 -11.89491 -11.57698 -11.44343 -11.39093 -11.10837 -10.82687 -9.78683 -9.70730 -9.08882 -8.94222 -7.93433 -5.21915 -0.43962 0.37524 1.34912 1.47340 1.48485 1.56043 1.58191 1.71101 1.99128 2.56376 2.70933 3.27836 3.40462 3.60097 3.74031 3.84085 3.92618 3.97743 4.02110 4.07387 4.23419 4.29402 4.40609 4.42934 4.56384 4.64154 4.67502 4.76665 4.82751 4.92024 4.96080 5.02927 5.13537 5.21225 5.26743 5.36744 5.39601 5.47380 5.50439 5.59665 5.71304 6.25922 6.26587 6.34335 6.49227 7.04121 7.36330 8.08219 8.34032 9.29308 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.009785 B = 0.005826 C = 0.004210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2860.878821 B = 4804.540915 C = 6649.962405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.063 4.063 3 Si 0.960 3.040 4 H -0.282 1.282 5 H -0.296 1.296 6 H -0.278 1.278 7 C -0.236 4.236 8 H 0.067 0.933 9 N -0.726 5.726 10 C 0.164 3.836 11 H 0.030 0.970 12 C -0.119 4.119 13 C -0.119 4.119 14 C 0.108 3.892 15 N -0.594 5.594 16 C 0.561 3.439 17 O -0.570 6.570 18 C -0.069 4.069 19 C -0.116 4.116 20 C -0.069 4.069 21 C -0.118 4.118 22 C 0.114 3.886 23 N -0.497 5.497 24 H 0.455 0.545 25 N -0.264 5.264 26 C 0.069 3.931 27 C -0.165 4.165 28 C 0.100 3.900 29 H 0.252 0.748 30 H 0.378 0.622 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.143 0.857 38 H 0.171 0.829 39 H 0.165 0.835 40 H 0.195 0.805 41 H 0.073 0.927 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.494 -9.085 -8.542 15.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.256 4.256 3 Si 0.790 3.210 4 H -0.209 1.209 5 H -0.223 1.223 6 H -0.204 1.204 7 C -0.368 4.368 8 H 0.085 0.915 9 N -0.366 5.366 10 C 0.055 3.945 11 H 0.048 0.952 12 C -0.157 4.157 13 C -0.157 4.157 14 C -0.014 4.014 15 N -0.325 5.325 16 C 0.349 3.651 17 O -0.451 6.451 18 C -0.075 4.075 19 C -0.136 4.136 20 C -0.090 4.090 21 C -0.140 4.140 22 C -0.003 4.003 23 N -0.215 5.215 24 H 0.304 0.696 25 N -0.080 5.080 26 C -0.126 4.126 27 C -0.174 4.174 28 C -0.025 4.025 29 H 0.061 0.939 30 H 0.211 0.789 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.106 0.894 37 H 0.161 0.839 38 H 0.189 0.811 39 H 0.182 0.818 40 H 0.211 0.789 41 H 0.091 0.909 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.133 -9.310 -7.995 15.915 hybrid contribution -0.452 1.313 -0.119 1.394 sum 9.682 -7.997 -8.114 14.951 Atomic orbital electron populations 1.69777 1.06282 1.26008 1.59264 1.25371 0.96179 1.00417 1.03654 0.85345 0.77604 0.80435 0.77637 1.20921 1.22280 1.20363 1.19449 0.90959 0.85183 1.41243 0.91533 1.42473 1.05514 1.00361 1.88291 1.20638 0.94515 0.85922 0.93455 0.95199 1.21745 0.98663 0.94212 1.01098 1.21820 1.00544 0.97300 0.96041 1.21816 0.97086 0.89066 0.93403 1.48204 1.18592 1.11126 1.54604 1.18454 0.80641 0.87298 0.78666 1.90733 1.64394 1.27350 1.62602 1.19355 0.92892 0.96932 0.98361 1.21366 1.00360 0.96363 0.95557 1.21341 0.93732 0.94876 0.99034 1.20637 0.94929 1.01688 0.96698 1.19063 0.87214 0.97061 0.97011 1.46041 1.12581 1.33376 1.29473 0.69646 1.76654 1.23015 1.02682 1.05622 1.24002 0.89891 0.99515 0.99183 1.18836 0.95596 1.01483 1.01477 1.22626 0.98160 0.81736 0.99960 0.93947 0.78944 0.92234 0.91025 0.92575 0.87780 0.89230 0.89394 0.83909 0.81133 0.81755 0.78869 0.90905 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -56.03 13.06 21.65 0.28 -55.75 16 2 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 3 Si 0.96 44.56 29.55 68.60 2.03 46.58 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 5 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.24 -12.48 9.93 84.03 0.83 -11.65 16 8 H 0.07 3.50 7.83 -2.91 -0.02 3.47 16 9 N -0.73 -34.03 5.12 -322.56 -1.65 -35.68 16 10 C 0.16 6.09 2.92 45.07 0.13 6.23 16 11 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 12 C -0.12 -3.51 5.35 30.62 0.16 -3.34 16 13 C -0.12 -2.79 6.08 30.67 0.19 -2.60 16 14 C 0.11 2.62 6.44 86.36 0.56 3.18 16 15 N -0.59 -17.42 2.97 -822.72 -2.45 -19.87 16 16 C 0.56 18.03 7.03 86.68 0.61 18.64 16 17 O -0.57 -20.74 16.49 -4.04 -0.07 -20.81 16 18 C -0.07 -2.10 4.63 -19.90 -0.09 -2.19 16 19 C -0.12 -2.91 7.75 22.52 0.17 -2.74 16 20 C -0.07 -1.40 9.99 22.24 0.22 -1.18 16 21 C -0.12 -2.37 10.06 22.41 0.23 -2.15 16 22 C 0.11 2.93 7.32 39.13 0.29 3.22 16 23 N -0.50 -11.81 7.45 -51.56 -0.38 -12.19 16 24 H 0.46 7.33 8.96 -213.37 -1.91 5.42 16 25 N -0.26 -7.63 12.58 -56.45 -0.71 -8.34 16 26 C 0.07 2.09 11.83 85.65 1.01 3.10 16 27 C -0.17 -5.05 6.00 -21.20 -0.13 -5.18 16 28 C 0.10 3.26 5.14 86.36 0.44 3.70 16 29 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 30 H 0.38 18.85 7.80 -92.70 -0.72 18.13 16 31 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.98 16 33 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.09 2.24 7.00 -2.38 -0.02 2.22 16 36 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.14 3.19 7.74 -2.91 -0.02 3.17 16 38 H 0.17 2.28 8.06 -2.91 -0.02 2.25 16 39 H 0.16 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.19 5.45 8.06 -2.91 -0.02 5.43 16 41 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 42 H 0.08 2.69 5.39 -2.39 -0.01 2.68 16 Total: -1.00 -68.95 348.66 0.58 -68.37 By element: Atomic # 1 Polarization: 35.21 SS G_CDS: -1.57 Total: 33.64 kcal Atomic # 6 Polarization: -1.06 SS G_CDS: 5.10 Total: 4.04 kcal Atomic # 7 Polarization: -126.91 SS G_CDS: -4.91 Total: -131.82 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.07 Total: -20.81 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -68.95 0.58 -68.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999863411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.965 kcal (2) G-P(sol) polarization free energy of solvation -68.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds