Wall clock time and date at job start Fri Apr 10 2020 23:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00072 * 2 1 4 4 H 1.48506 * 109.47306 * 240.00018 * 3 2 1 5 5 H 1.48502 * 109.47346 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47682 * 120.00085 * 3 2 1 7 7 C 1.38816 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00207 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99751 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.49702 * 324.99793 * 10 9 7 12 12 C 1.53045 * 109.52235 * 204.92220 * 10 9 7 13 13 C 1.53038 * 109.53919 * 178.66919 * 12 10 9 14 14 C 1.53197 * 109.31419 * 61.35765 * 13 12 10 15 15 N 1.46923 * 108.77404 * 305.36780 * 14 13 12 16 16 C 1.34779 * 120.62919 * 233.58237 * 15 14 13 17 17 O 1.21566 * 120.00270 * 172.26400 * 16 15 14 18 18 C 1.47770 * 120.00009 * 352.26413 * 16 15 14 19 19 N 1.32746 * 120.05700 * 352.23881 * 18 16 15 20 20 C 1.31717 * 122.12998 * 179.76687 * 19 18 16 21 21 C 1.38309 * 121.69231 * 0.48143 * 20 19 18 22 22 C 1.39023 * 119.08919 * 359.77915 * 21 20 19 23 23 N 1.37194 * 134.64898 * 179.97438 * 22 21 20 24 24 H 0.96994 * 125.06142 * 0.06224 * 23 22 21 25 25 C 1.36723 * 109.87371 * 180.02562 * 23 22 21 26 26 C 1.34568 * 109.95849 * 0.02562 * 25 23 22 27 27 C 1.40399 * 120.05645 * 172.50631 * 18 16 15 28 28 C 1.46923 * 118.74276 * 53.61116 * 15 14 13 29 29 H 0.96997 * 119.99840 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99763 * 0.02562 * 9 7 2 31 31 H 1.09007 * 109.45470 * 298.68015 * 12 10 9 32 32 H 1.08995 * 109.45998 * 58.64291 * 12 10 9 33 33 H 1.09007 * 109.49483 * 301.40989 * 13 12 10 34 34 H 1.09000 * 109.52846 * 181.32834 * 13 12 10 35 35 H 1.08999 * 109.58205 * 185.58179 * 14 13 12 36 36 H 1.08993 * 109.58222 * 65.15822 * 14 13 12 37 37 H 1.08003 * 119.15751 * 180.23463 * 20 19 18 38 38 H 1.07998 * 120.45611 * 179.76200 * 21 20 19 39 39 H 1.07995 * 125.02142 * 180.02562 * 25 23 22 40 40 H 1.08000 * 126.50468 * 180.02562 * 26 25 23 41 41 H 1.08994 * 109.59087 * 186.60206 * 28 15 14 42 42 H 1.09006 * 109.70149 * 66.23912 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6567 0.0027 11 1 2.9689 -3.5515 -0.5868 12 6 1.1810 -4.7543 -0.6041 13 6 1.9578 -6.0725 -0.6336 14 6 2.3200 -6.4793 0.7983 15 7 3.0393 -5.3691 1.4377 16 6 4.2429 -5.5699 2.0101 17 8 4.8912 -4.6226 2.4103 18 6 4.7745 -6.9414 2.1511 19 7 4.0081 -7.9849 1.8580 20 6 4.4414 -9.2242 1.9645 21 6 5.7226 -9.5111 2.3994 22 6 6.5754 -8.4635 2.7278 23 7 7.8682 -8.3779 3.1789 24 1 8.4481 -9.1351 3.3555 25 6 8.2178 -7.0661 3.3416 26 6 7.1846 -6.2707 3.0090 27 6 6.0891 -7.1433 2.6008 28 6 2.4214 -4.0362 1.4418 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3880 0.0016 31 1 0.2819 -4.8761 0.0001 32 1 0.9008 -4.4751 -1.6198 33 1 2.8696 -5.9445 -1.2171 34 1 1.3415 -6.8486 -1.0874 35 1 2.9572 -7.3634 0.7768 36 1 1.4100 -6.6957 1.3579 37 1 3.7779 -10.0374 1.7096 38 1 6.0559 -10.5350 2.4830 39 1 9.1809 -6.7195 3.6861 40 1 7.1696 -5.1912 3.0376 41 1 3.1255 -3.3083 1.8449 42 1 1.5200 -4.0508 2.0544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000231605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:57 Heat of formation + Delta-G solvation = 70.267171 kcal Electronic energy + Delta-G solvation = -25891.527040 eV Core-core repulsion = 22259.144130 eV Total energy + Delta-G solvation = -3632.382910 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.86893 -39.77048 -38.09510 -37.08327 -34.32306 -32.56190 -32.06377 -31.04537 -30.82439 -29.49806 -28.02899 -25.70693 -23.91962 -23.73840 -22.80430 -21.66693 -21.32303 -20.40448 -19.25762 -18.19092 -17.33121 -16.98134 -16.20363 -15.74556 -15.42551 -15.36679 -14.94828 -14.57817 -14.34417 -14.01644 -13.72791 -13.50933 -13.35985 -13.22777 -13.07699 -12.85428 -12.52084 -12.22071 -12.08999 -11.91170 -11.28611 -10.91687 -10.72207 -10.69147 -10.42497 -10.16159 -10.14940 -9.84626 -9.70125 -9.62080 -9.16870 -8.97783 -8.77939 -8.23923 -8.03317 -6.90250 -5.70670 -2.99759 0.33347 1.21257 2.41263 2.67696 2.92233 3.29723 3.51608 3.54760 3.57128 3.87785 4.11943 4.33694 4.54024 4.66322 4.70746 4.86962 5.08329 5.17676 5.26705 5.36115 5.43951 5.54399 5.61029 5.71337 5.77143 5.85459 5.97963 6.03385 6.11450 6.28143 6.33448 6.34539 6.39712 6.50369 6.56360 6.63138 6.72706 6.96391 6.98554 7.08315 7.19390 7.62189 7.79577 7.87733 8.46999 8.51228 9.59395 10.14773 10.50434 11.51779 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019238 B = 0.003399 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.068700 B = 8235.741092 C = 9480.311899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.012 4.012 3 Si 0.907 3.093 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.719 5.719 10 C 0.170 3.830 11 H 0.050 0.950 12 C -0.127 4.127 13 C -0.130 4.130 14 C 0.069 3.931 15 N -0.582 5.582 16 C 0.561 3.439 17 O -0.532 6.532 18 C 0.148 3.852 19 N -0.464 5.464 20 C 0.093 3.907 21 C -0.165 4.165 22 C 0.121 3.879 23 N -0.590 5.590 24 H 0.418 0.582 25 C 0.043 3.957 26 C -0.162 4.162 27 C -0.112 4.112 28 C 0.090 3.910 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.068 0.932 35 H 0.147 0.853 36 H 0.059 0.941 37 H 0.165 0.835 38 H 0.134 0.866 39 H 0.178 0.822 40 H 0.164 0.836 41 H 0.089 0.911 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.568 -24.592 5.144 28.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.208 4.208 3 Si 0.738 3.262 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.165 4.165 13 C -0.169 4.169 14 C -0.054 4.054 15 N -0.313 5.313 16 C 0.347 3.653 17 O -0.408 6.408 18 C 0.004 3.996 19 N -0.177 5.177 20 C -0.060 4.060 21 C -0.188 4.188 22 C 0.006 3.994 23 N -0.194 5.194 24 H 0.256 0.744 25 C -0.082 4.082 26 C -0.188 4.188 27 C -0.120 4.120 28 C -0.034 4.034 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.163 0.837 36 H 0.078 0.922 37 H 0.182 0.818 38 H 0.152 0.848 39 H 0.195 0.805 40 H 0.182 0.818 41 H 0.108 0.892 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 13.253 -23.840 5.095 27.748 hybrid contribution 1.139 0.369 0.419 1.269 sum 14.392 -23.471 5.514 28.078 Atomic orbital electron populations 1.69654 1.05107 1.25761 1.57701 1.24735 0.95500 0.97682 1.02872 0.86266 0.78531 0.83456 0.77969 1.21260 1.21748 1.21132 1.19254 0.91104 0.84035 1.42716 0.91077 1.42381 1.05790 0.99623 1.88126 1.20480 0.94889 0.86379 0.92414 0.93204 1.21842 0.98719 0.94513 1.01433 1.21923 1.00305 0.97650 0.97041 1.23047 0.98675 0.91775 0.91907 1.48112 1.17912 1.11424 1.53873 1.17780 0.81585 0.86661 0.79283 1.90764 1.57826 1.41808 1.50439 1.20909 0.89430 0.93274 0.95970 1.67607 1.34780 0.99174 1.16157 1.22546 0.93110 0.94014 0.96288 1.21124 0.94551 0.97841 1.05270 1.18292 0.86128 0.95275 0.99732 1.41650 1.11028 1.08238 1.58468 0.74437 1.22106 1.00516 0.81861 1.03708 1.22011 0.90811 1.00260 1.05704 1.19830 0.94855 0.93115 1.04239 1.22805 0.97740 0.81740 1.01124 0.93493 0.78110 0.92191 0.91787 0.92187 0.91336 0.83675 0.92225 0.81797 0.84815 0.80513 0.81846 0.89215 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.73 13.06 55.49 0.72 -28.00 16 2 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 3 Si 0.91 23.16 29.55 -169.99 -5.02 18.13 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 7 C -0.24 -6.91 9.93 -15.06 -0.15 -7.06 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.72 -18.64 5.13 -53.31 -0.27 -18.91 16 10 C 0.17 3.61 2.92 -67.81 -0.20 3.42 16 11 H 0.05 1.14 8.08 -51.93 -0.42 0.72 16 12 C -0.13 -2.20 5.36 -26.69 -0.14 -2.35 16 13 C -0.13 -1.86 6.08 -26.61 -0.16 -2.02 16 14 C 0.07 0.99 5.91 -3.71 -0.02 0.97 16 15 N -0.58 -10.30 2.97 -173.91 -0.52 -10.82 16 16 C 0.56 10.24 7.65 -12.36 -0.09 10.14 16 17 O -0.53 -11.13 14.63 5.31 0.08 -11.05 16 18 C 0.15 2.22 6.64 -82.76 -0.55 1.68 16 19 N -0.46 -5.80 6.09 -9.66 -0.06 -5.86 16 20 C 0.09 0.84 11.13 -17.57 -0.20 0.64 16 21 C -0.16 -1.33 10.14 -39.26 -0.40 -1.73 16 22 C 0.12 1.22 7.34 -84.02 -0.62 0.60 16 23 N -0.59 -4.24 6.05 -10.59 -0.06 -4.31 16 24 H 0.42 1.45 8.96 -40.82 -0.37 1.08 16 25 C 0.04 0.35 11.82 -16.67 -0.20 0.15 16 26 C -0.16 -1.99 10.27 -37.83 -0.39 -2.38 16 27 C -0.11 -1.52 6.15 -104.88 -0.64 -2.16 16 28 C 0.09 1.85 6.03 -3.71 -0.02 1.83 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.39 10.45 7.80 -40.82 -0.32 10.13 16 31 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.15 1.94 3.96 -86.76 -0.34 1.59 16 36 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.16 0.90 8.06 -52.48 -0.42 0.47 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.18 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.16 2.20 7.26 -52.49 -0.38 1.82 16 41 H 0.09 2.09 7.00 -51.93 -0.36 1.73 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 343.87 15.07 5.18 5.18 Total: -1.00 -35.23 343.87 -9.37 -44.61 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.54 Total: 9.76 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -3.88 Total: 1.28 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -0.19 Total: -67.91 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.08 Total: -11.05 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.13 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -35.23 -9.37 -44.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000231605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.874 kcal (2) G-P(sol) polarization free energy of solvation -35.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds