Wall clock time and date at job start Fri Apr 10 2020 23:00:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00072 * 2 1 4 4 H 1.48506 * 109.47306 * 240.00018 * 3 2 1 5 5 H 1.48502 * 109.47346 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47682 * 120.00085 * 3 2 1 7 7 C 1.38816 * 120.00212 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00207 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99725 * 359.97438 * 7 2 1 10 10 C 1.46499 * 119.99751 * 180.02562 * 9 7 2 11 11 H 1.09003 * 109.49702 * 324.99793 * 10 9 7 12 12 C 1.53045 * 109.52235 * 204.92220 * 10 9 7 13 13 C 1.53038 * 109.53919 * 178.66919 * 12 10 9 14 14 C 1.53197 * 109.31419 * 61.35765 * 13 12 10 15 15 N 1.46923 * 108.77404 * 305.36780 * 14 13 12 16 16 C 1.34779 * 120.62919 * 233.58237 * 15 14 13 17 17 O 1.21566 * 120.00270 * 172.26400 * 16 15 14 18 18 C 1.47770 * 120.00009 * 352.26413 * 16 15 14 19 19 N 1.32746 * 120.05700 * 352.23881 * 18 16 15 20 20 C 1.31717 * 122.12998 * 179.76687 * 19 18 16 21 21 C 1.38309 * 121.69231 * 0.48143 * 20 19 18 22 22 C 1.39023 * 119.08919 * 359.77915 * 21 20 19 23 23 N 1.37194 * 134.64898 * 179.97438 * 22 21 20 24 24 H 0.96994 * 125.06142 * 0.06224 * 23 22 21 25 25 C 1.36723 * 109.87371 * 180.02562 * 23 22 21 26 26 C 1.34568 * 109.95849 * 0.02562 * 25 23 22 27 27 C 1.40399 * 120.05645 * 172.50631 * 18 16 15 28 28 C 1.46923 * 118.74276 * 53.61116 * 15 14 13 29 29 H 0.96997 * 119.99840 * 359.97438 * 1 2 3 30 30 H 0.96993 * 119.99763 * 0.02562 * 9 7 2 31 31 H 1.09007 * 109.45470 * 298.68015 * 12 10 9 32 32 H 1.08995 * 109.45998 * 58.64291 * 12 10 9 33 33 H 1.09007 * 109.49483 * 301.40989 * 13 12 10 34 34 H 1.09000 * 109.52846 * 181.32834 * 13 12 10 35 35 H 1.08999 * 109.58205 * 185.58179 * 14 13 12 36 36 H 1.08993 * 109.58222 * 65.15822 * 14 13 12 37 37 H 1.08003 * 119.15751 * 180.23463 * 20 19 18 38 38 H 1.07998 * 120.45611 * 179.76200 * 21 20 19 39 39 H 1.07995 * 125.02142 * 180.02562 * 25 23 22 40 40 H 1.08000 * 126.50468 * 180.02562 * 26 25 23 41 41 H 1.08994 * 109.59087 * 186.60206 * 28 15 14 42 42 H 1.09006 * 109.70149 * 66.23912 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6567 0.0027 11 1 2.9689 -3.5515 -0.5868 12 6 1.1810 -4.7543 -0.6041 13 6 1.9578 -6.0725 -0.6336 14 6 2.3200 -6.4793 0.7983 15 7 3.0393 -5.3691 1.4377 16 6 4.2429 -5.5699 2.0101 17 8 4.8912 -4.6226 2.4103 18 6 4.7745 -6.9414 2.1511 19 7 4.0081 -7.9849 1.8580 20 6 4.4414 -9.2242 1.9645 21 6 5.7226 -9.5111 2.3994 22 6 6.5754 -8.4635 2.7278 23 7 7.8682 -8.3779 3.1789 24 1 8.4481 -9.1351 3.3555 25 6 8.2178 -7.0661 3.3416 26 6 7.1846 -6.2707 3.0090 27 6 6.0891 -7.1433 2.6008 28 6 2.4214 -4.0362 1.4418 29 1 -0.4850 0.8400 0.0004 30 1 0.3557 -2.3880 0.0016 31 1 0.2819 -4.8761 0.0001 32 1 0.9008 -4.4751 -1.6198 33 1 2.8696 -5.9445 -1.2171 34 1 1.3415 -6.8486 -1.0874 35 1 2.9572 -7.3634 0.7768 36 1 1.4100 -6.6957 1.3579 37 1 3.7779 -10.0374 1.7096 38 1 6.0559 -10.5350 2.4830 39 1 9.1809 -6.7195 3.6861 40 1 7.1696 -5.1912 3.0376 41 1 3.1255 -3.3083 1.8449 42 1 1.5200 -4.0508 2.0544 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000231605.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:57 Heat of formation + Delta-G solvation = 45.265595 kcal Electronic energy + Delta-G solvation = -25892.611190 eV Core-core repulsion = 22259.144130 eV Total energy + Delta-G solvation = -3633.467059 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.67095 -41.05412 -39.02519 -38.58544 -36.16755 -33.98975 -33.18433 -32.70299 -31.72243 -30.46813 -29.69732 -26.97225 -25.85836 -24.88237 -23.62585 -23.15186 -22.37862 -21.57086 -20.58168 -19.20059 -19.00454 -18.46777 -17.21870 -16.87062 -16.74874 -16.40229 -16.28271 -15.75697 -15.65790 -15.47236 -15.21504 -15.09689 -14.84244 -14.22227 -14.04166 -13.93888 -13.79245 -13.70098 -13.55760 -13.04707 -12.88452 -12.75419 -12.48680 -12.25432 -12.08931 -11.87194 -11.75491 -11.34592 -11.22853 -11.06129 -10.95934 -10.02423 -9.77093 -9.69426 -9.03884 -8.84924 -7.98513 -5.28251 -0.55196 0.44509 1.43494 1.47189 1.53471 1.57152 1.82347 1.94859 2.09684 2.53720 2.90985 3.14027 3.33983 3.54781 3.81393 3.84924 3.96901 4.05607 4.10119 4.16320 4.28483 4.39045 4.42058 4.46410 4.50753 4.62876 4.76045 4.79610 4.88627 4.92927 5.05280 5.10607 5.13086 5.23138 5.37303 5.42320 5.48689 5.49874 5.57035 5.74532 5.96088 6.23868 6.45575 6.59425 6.82346 7.16474 7.30146 8.01527 8.28700 9.24112 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019238 B = 0.003399 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.068700 B = 8235.741092 C = 9480.311899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.067 4.067 3 Si 0.971 3.029 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.249 4.249 8 H 0.064 0.936 9 N -0.729 5.729 10 C 0.170 3.830 11 H 0.028 0.972 12 C -0.118 4.118 13 C -0.121 4.121 14 C 0.067 3.933 15 N -0.586 5.586 16 C 0.552 3.448 17 O -0.578 6.578 18 C 0.104 3.896 19 N -0.469 5.469 20 C 0.083 3.917 21 C -0.133 4.133 22 C 0.112 3.888 23 N -0.570 5.570 24 H 0.442 0.558 25 C 0.091 3.909 26 C -0.229 4.229 27 C -0.135 4.135 28 C 0.105 3.895 29 H 0.254 0.746 30 H 0.378 0.622 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.108 0.892 35 H 0.167 0.833 36 H 0.069 0.931 37 H 0.207 0.793 38 H 0.182 0.818 39 H 0.221 0.779 40 H 0.133 0.867 41 H 0.050 0.950 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.281 -28.921 5.240 33.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.799 3.201 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.209 1.209 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.369 5.369 10 C 0.060 3.940 11 H 0.046 0.954 12 C -0.156 4.156 13 C -0.159 4.159 14 C -0.053 4.053 15 N -0.317 5.317 16 C 0.341 3.659 17 O -0.457 6.457 18 C -0.038 4.038 19 N -0.182 5.182 20 C -0.071 4.071 21 C -0.155 4.155 22 C -0.004 4.004 23 N -0.176 5.176 24 H 0.284 0.716 25 C -0.036 4.036 26 C -0.254 4.254 27 C -0.144 4.144 28 C -0.020 4.020 29 H 0.063 0.937 30 H 0.210 0.790 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.072 0.928 34 H 0.126 0.874 35 H 0.182 0.818 36 H 0.087 0.913 37 H 0.224 0.776 38 H 0.200 0.800 39 H 0.238 0.762 40 H 0.151 0.849 41 H 0.068 0.932 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 14.993 -28.251 5.183 32.400 hybrid contribution 0.750 1.520 0.457 1.756 sum 15.744 -26.730 5.641 31.531 Atomic orbital electron populations 1.69792 1.06358 1.26310 1.58978 1.25512 0.96435 1.00849 1.03224 0.85263 0.77366 0.79362 0.78096 1.20320 1.21344 1.20903 1.19502 0.91044 0.85509 1.41986 0.91798 1.42493 1.05485 1.00534 1.88356 1.20602 0.94527 0.86153 0.92720 0.95366 1.21756 0.98439 0.94637 1.00765 1.21916 1.00165 0.96666 0.97162 1.23357 0.99123 0.91191 0.91673 1.48170 1.18261 1.10765 1.54455 1.18480 0.81074 0.88250 0.78145 1.90717 1.59016 1.43807 1.52206 1.20277 0.90794 0.91861 1.00839 1.67296 1.34884 1.00040 1.16003 1.23280 0.94486 0.93319 0.95976 1.21666 0.93292 0.99403 1.01186 1.18523 0.87360 0.94231 1.00266 1.41649 1.10302 1.08676 1.56998 0.71647 1.22611 1.00408 0.81555 0.99024 1.21930 0.93062 0.99677 1.10744 1.20118 0.94654 0.95447 1.04200 1.22266 0.96572 0.83164 1.00037 0.93750 0.78984 0.91588 0.92047 0.92798 0.87353 0.81775 0.91287 0.77631 0.80034 0.76206 0.84932 0.93169 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.98 13.06 21.65 0.28 -60.69 16 2 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 3 Si 0.97 48.96 29.55 68.60 2.03 50.99 16 4 H -0.28 -13.48 7.11 99.48 0.71 -12.77 16 5 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.28 -14.05 7.11 99.48 0.71 -13.34 16 7 C -0.25 -14.99 9.93 84.03 0.83 -14.15 16 8 H 0.06 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.73 -39.76 5.13 -322.56 -1.65 -41.42 16 10 C 0.17 7.66 2.92 45.07 0.13 7.79 16 11 H 0.03 1.38 8.08 -2.39 -0.02 1.36 16 12 C -0.12 -4.12 5.36 30.62 0.16 -3.96 16 13 C -0.12 -3.28 6.08 30.67 0.19 -3.09 16 14 C 0.07 1.91 5.91 86.36 0.51 2.42 16 15 N -0.59 -21.93 2.97 -822.41 -2.44 -24.37 16 16 C 0.55 21.76 7.65 86.76 0.66 22.43 16 17 O -0.58 -26.96 14.63 -3.92 -0.06 -27.02 16 18 C 0.10 3.21 6.64 42.05 0.28 3.49 16 19 N -0.47 -11.00 6.09 -184.48 -1.12 -12.12 16 20 C 0.08 1.16 11.13 84.73 0.94 2.10 16 21 C -0.13 -1.49 10.14 22.48 0.23 -1.26 16 22 C 0.11 1.91 7.34 39.24 0.29 2.20 16 23 N -0.57 -5.95 6.05 -187.42 -1.13 -7.09 16 24 H 0.44 0.69 8.96 -92.71 -0.83 -0.14 16 25 C 0.09 1.26 11.82 83.09 0.98 2.24 16 26 C -0.23 -5.87 10.27 23.41 0.24 -5.63 16 27 C -0.14 -3.70 6.15 -20.03 -0.12 -3.82 16 28 C 0.11 4.67 6.03 86.36 0.52 5.19 16 29 H 0.25 15.47 8.31 -92.71 -0.77 14.70 16 30 H 0.38 21.43 7.80 -92.71 -0.72 20.71 16 31 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 32 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.11 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.17 4.13 3.96 -71.16 -0.28 3.85 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.21 1.06 8.06 -2.91 -0.02 1.03 16 38 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 39 H 0.22 0.98 8.06 -2.91 -0.02 0.96 16 40 H 0.13 4.12 7.26 -2.91 -0.02 4.10 16 41 H 0.05 2.59 7.00 -2.39 -0.02 2.57 16 42 H 0.06 2.58 8.14 -2.38 -0.02 2.56 16 Total: -1.00 -84.80 343.87 1.46 -83.33 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -0.75 Total: 26.08 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 6.32 Total: 12.31 kcal Atomic # 7 Polarization: -139.62 SS G_CDS: -6.07 Total: -145.69 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.06 Total: -27.02 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 2.03 Total: 50.99 kcal Total: -84.80 1.46 -83.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000231605.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.599 kcal (2) G-P(sol) polarization free energy of solvation -84.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds