Wall clock time and date at job start Fri Apr 10 2020 23:01:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00046 * 2 1 4 4 H 1.48497 * 109.47017 * 180.27382 * 3 2 1 5 5 H 1.48499 * 109.47053 * 300.27179 * 3 2 1 6 6 H 1.48495 * 109.47155 * 60.27532 * 3 2 1 7 7 C 1.38809 * 120.00089 * 180.27037 * 2 1 3 8 8 H 1.08000 * 120.00335 * 179.72086 * 7 2 1 9 9 N 1.36936 * 119.99878 * 359.73245 * 7 2 1 10 10 C 1.46503 * 120.00132 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.49506 * 34.92931 * 10 9 7 12 12 C 1.53039 * 109.50009 * 154.99490 * 10 9 7 13 13 C 1.53036 * 109.53885 * 181.31579 * 12 10 9 14 14 C 1.53190 * 109.31537 * 298.63823 * 13 12 10 15 15 N 1.46927 * 108.77759 * 54.63390 * 14 13 12 16 16 C 1.34774 * 120.63328 * 126.41006 * 15 14 13 17 17 O 1.21565 * 120.00355 * 176.29646 * 16 15 14 18 18 C 1.47767 * 119.99882 * 356.30295 * 16 15 14 19 19 N 1.32746 * 120.05854 * 39.66956 * 18 16 15 20 20 C 1.31716 * 122.13697 * 179.97438 * 19 18 16 21 21 C 1.38311 * 121.68849 * 0.02562 * 20 19 18 22 22 C 1.39016 * 119.08856 * 359.97438 * 21 20 19 23 23 N 1.37187 * 134.64801 * 180.02562 * 22 21 20 24 24 H 0.97010 * 125.06282 * 359.95406 * 23 22 21 25 25 C 1.36733 * 109.87723 * 179.32283 * 23 22 21 26 26 C 1.34565 * 109.95253 * 0.60055 * 25 23 22 27 27 C 1.40400 * 120.05762 * 219.39494 * 18 16 15 28 28 C 1.46924 * 118.73837 * 306.39567 * 15 14 13 29 29 H 0.97001 * 120.00386 * 359.73111 * 1 2 3 30 30 H 0.97000 * 120.00334 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.46302 * 301.34223 * 12 10 9 32 32 H 1.09005 * 109.45866 * 61.31200 * 12 10 9 33 33 H 1.09005 * 109.49705 * 58.58931 * 13 12 10 34 34 H 1.08999 * 109.49646 * 178.68575 * 13 12 10 35 35 H 1.09000 * 109.58637 * 174.42527 * 14 13 12 36 36 H 1.08998 * 109.58534 * 294.84772 * 14 13 12 37 37 H 1.08002 * 119.16136 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.45710 * 180.02562 * 21 20 19 39 39 H 1.08004 * 125.02201 * 180.08832 * 25 23 22 40 40 H 1.07996 * 126.49772 * 179.51176 * 26 25 23 41 41 H 1.09010 * 109.58667 * 293.82243 * 28 15 14 42 42 H 1.08997 * 109.59162 * 173.39654 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0067 5 1 1.8864 2.3993 -1.2092 6 1 1.8965 2.3935 1.2158 7 6 2.0102 -1.2021 -0.0057 8 1 3.0902 -1.2021 -0.0102 9 7 1.3255 -2.3880 -0.0057 10 6 2.0580 -3.6568 -0.0123 11 1 2.9720 -3.5521 0.5723 12 6 1.1839 -4.7544 0.5985 13 6 1.9602 -6.0731 0.6221 14 6 2.3138 -6.4787 -0.8121 15 7 3.0299 -5.3683 -1.4547 16 6 4.2301 -5.5690 -2.0342 17 8 4.7817 -4.6584 -2.6210 18 6 4.8753 -6.8961 -1.9565 19 7 4.1457 -7.9983 -2.0777 20 6 4.6781 -9.2015 -2.0155 21 6 6.0346 -9.3863 -1.8187 22 6 6.8559 -8.2729 -1.6839 23 7 8.2002 -8.0849 -1.4846 24 1 8.8553 -8.7950 -1.3973 25 6 8.4811 -6.7474 -1.4413 26 6 7.3497 -6.0353 -1.5946 27 6 6.2621 -6.9933 -1.7600 28 6 2.4128 -4.0350 -1.4538 29 1 -0.4851 0.8400 0.0039 30 1 0.3555 -2.3881 -0.0014 31 1 0.9096 -4.4762 1.6161 32 1 0.2813 -4.8754 -0.0006 33 1 2.8754 -5.9461 1.2004 34 1 1.3455 -6.8490 1.0786 35 1 2.9505 -7.3632 -0.7953 36 1 1.4004 -6.6940 -1.3667 37 1 4.0391 -10.0658 -2.1199 38 1 6.4502 -10.3820 -1.7713 39 1 9.4646 -6.3250 -1.2966 40 1 7.2634 -4.9588 -1.5953 41 1 1.5074 -4.0510 -2.0607 42 1 3.1148 -3.3070 -1.8604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000231607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:01:00 Heat of formation + Delta-G solvation = 60.756065 kcal Electronic energy + Delta-G solvation = -25951.426211 eV Core-core repulsion = 22318.630869 eV Total energy + Delta-G solvation = -3632.795342 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.84985 -39.78461 -38.09029 -37.11976 -34.36089 -32.56861 -32.07622 -31.07336 -30.85456 -29.50120 -28.09837 -25.72044 -23.99770 -23.73872 -22.80062 -21.72762 -21.33185 -20.40321 -19.28349 -18.18716 -17.38724 -17.01538 -16.24693 -15.79335 -15.41849 -15.26390 -14.92686 -14.72463 -14.27916 -14.05570 -13.83386 -13.51380 -13.33746 -13.30129 -13.09577 -12.92405 -12.52087 -12.29441 -12.09819 -11.90722 -11.23937 -10.93083 -10.78241 -10.58810 -10.49242 -10.18822 -10.11884 -10.02518 -9.73929 -9.67044 -9.32649 -9.04087 -8.98706 -8.25129 -8.07667 -6.93584 -5.73431 -3.02797 0.41265 1.25264 2.40065 2.67234 2.89205 3.23816 3.48266 3.54414 3.56825 3.72676 4.20384 4.34145 4.55240 4.63690 4.72475 4.86136 5.09048 5.19970 5.20388 5.28719 5.33955 5.46580 5.56200 5.70702 5.75533 5.77080 5.90356 5.96745 6.04902 6.21248 6.24259 6.28191 6.34036 6.36821 6.47880 6.59426 6.61821 6.87337 6.91556 7.08881 7.11281 7.68424 7.77425 7.79959 8.43019 8.46595 9.56686 10.11435 10.47012 11.49038 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.003501 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.818792 B = 7995.084164 C = 9053.167708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.132 4.132 14 C 0.099 3.901 15 N -0.585 5.585 16 C 0.567 3.433 17 O -0.531 6.531 18 C 0.152 3.848 19 N -0.470 5.470 20 C 0.096 3.904 21 C -0.168 4.168 22 C 0.122 3.878 23 N -0.590 5.590 24 H 0.419 0.581 25 C 0.047 3.953 26 C -0.169 4.169 27 C -0.117 4.117 28 C 0.092 3.908 29 H 0.255 0.745 30 H 0.385 0.615 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.105 0.895 36 H 0.068 0.932 37 H 0.164 0.836 38 H 0.134 0.866 39 H 0.178 0.822 40 H 0.159 0.841 41 H 0.064 0.936 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.136 -23.612 -1.146 27.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.164 4.164 13 C -0.171 4.171 14 C -0.024 4.024 15 N -0.317 5.317 16 C 0.352 3.648 17 O -0.407 6.407 18 C 0.007 3.993 19 N -0.183 5.183 20 C -0.056 4.056 21 C -0.191 4.191 22 C 0.007 3.993 23 N -0.194 5.194 24 H 0.256 0.744 25 C -0.078 4.078 26 C -0.194 4.194 27 C -0.125 4.125 28 C -0.032 4.032 29 H 0.064 0.936 30 H 0.219 0.781 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.086 0.914 37 H 0.181 0.819 38 H 0.152 0.848 39 H 0.195 0.805 40 H 0.176 0.824 41 H 0.082 0.918 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.740 -22.945 -1.557 26.790 hybrid contribution 1.320 0.400 0.118 1.385 sum 15.060 -22.545 -1.439 27.150 Atomic orbital electron populations 1.69670 1.05112 1.25578 1.57713 1.24738 0.95505 0.97708 1.02816 0.86123 0.78963 0.84078 0.77125 1.20436 1.21816 1.21915 1.19330 0.91144 0.83986 1.42638 0.90975 1.42392 1.05828 0.99596 1.88064 1.20492 0.94952 0.86440 0.92349 0.93168 1.21830 0.98750 0.94228 1.01630 1.21933 1.00578 0.98001 0.96571 1.22151 0.97732 0.89974 0.92553 1.48127 1.18034 1.11310 1.54230 1.17796 0.81094 0.86149 0.79714 1.90800 1.63867 1.42989 1.43000 1.20750 0.88924 0.93011 0.96593 1.67767 1.38402 0.98001 1.14135 1.22430 0.91841 0.94760 0.96616 1.21127 0.94146 0.96974 1.06869 1.18249 0.84592 0.95209 1.01247 1.41649 1.06072 1.07824 1.63819 0.74408 1.22055 1.00212 0.81687 1.03808 1.21880 0.89706 0.99748 1.08100 1.19830 0.93531 0.93472 1.05659 1.22836 0.97931 0.81390 1.01085 0.93561 0.78062 0.91583 0.92012 0.92030 0.91174 0.87694 0.91403 0.81890 0.84833 0.80465 0.82366 0.91785 0.89102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.69 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.92 29.55 -169.99 -5.02 17.90 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 5 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 6 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 7 C -0.24 -6.80 9.93 -15.06 -0.15 -6.95 16 8 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 9 N -0.72 -18.29 5.12 -53.31 -0.27 -18.56 16 10 C 0.17 3.50 2.92 -67.81 -0.20 3.31 16 11 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 12 C -0.13 -2.12 5.35 -26.69 -0.14 -2.26 16 13 C -0.13 -1.81 6.08 -26.61 -0.16 -1.97 16 14 C 0.10 1.40 6.03 -3.71 -0.02 1.38 16 15 N -0.59 -10.25 2.97 -173.91 -0.52 -10.77 16 16 C 0.57 10.42 7.43 -12.37 -0.09 10.32 16 17 O -0.53 -11.35 15.92 5.31 0.08 -11.26 16 18 C 0.15 2.33 6.04 -82.76 -0.50 1.83 16 19 N -0.47 -6.16 7.26 -9.66 -0.07 -6.23 16 20 C 0.10 0.92 11.13 -17.57 -0.20 0.72 16 21 C -0.17 -1.42 10.14 -39.27 -0.40 -1.82 16 22 C 0.12 1.27 7.34 -84.03 -0.62 0.65 16 23 N -0.59 -4.38 6.05 -10.59 -0.06 -4.44 16 24 H 0.42 1.54 8.96 -40.82 -0.37 1.17 16 25 C 0.05 0.39 11.82 -16.67 -0.20 0.19 16 26 C -0.17 -2.09 10.59 -37.83 -0.40 -2.50 16 27 C -0.12 -1.61 6.12 -104.88 -0.64 -2.25 16 28 C 0.09 1.85 6.01 -3.71 -0.02 1.83 16 29 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.39 10.29 7.80 -40.82 -0.32 9.98 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.11 1.40 4.56 -51.93 -0.24 1.16 16 36 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.16 0.99 8.06 -52.49 -0.42 0.56 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.24 16 39 H 0.18 0.78 8.06 -52.48 -0.42 0.36 16 40 H 0.16 2.11 7.99 -52.49 -0.42 1.69 16 41 H 0.06 1.30 8.14 -51.92 -0.42 0.88 16 42 H 0.09 2.09 7.02 -51.93 -0.36 1.73 16 LS Contribution 347.27 15.07 5.23 5.23 Total: -1.00 -35.18 347.27 -9.22 -44.39 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -5.48 Total: 9.38 kcal Atomic # 6 Polarization: 5.88 SS G_CDS: -3.83 Total: 2.05 kcal Atomic # 7 Polarization: -67.49 SS G_CDS: -0.20 Total: -67.69 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.26 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -5.02 Total: 17.90 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.18 -9.22 -44.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000231607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.151 kcal (2) G-P(sol) polarization free energy of solvation -35.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds