Wall clock time and date at job start Fri Apr 10 2020 23:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86803 * 120.00046 * 2 1 4 4 H 1.48497 * 109.47017 * 180.27382 * 3 2 1 5 5 H 1.48499 * 109.47053 * 300.27179 * 3 2 1 6 6 H 1.48495 * 109.47155 * 60.27532 * 3 2 1 7 7 C 1.38809 * 120.00089 * 180.27037 * 2 1 3 8 8 H 1.08000 * 120.00335 * 179.72086 * 7 2 1 9 9 N 1.36936 * 119.99878 * 359.73245 * 7 2 1 10 10 C 1.46503 * 120.00132 * 179.97438 * 9 7 2 11 11 H 1.09004 * 109.49506 * 34.92931 * 10 9 7 12 12 C 1.53039 * 109.50009 * 154.99490 * 10 9 7 13 13 C 1.53036 * 109.53885 * 181.31579 * 12 10 9 14 14 C 1.53190 * 109.31537 * 298.63823 * 13 12 10 15 15 N 1.46927 * 108.77759 * 54.63390 * 14 13 12 16 16 C 1.34774 * 120.63328 * 126.41006 * 15 14 13 17 17 O 1.21565 * 120.00355 * 176.29646 * 16 15 14 18 18 C 1.47767 * 119.99882 * 356.30295 * 16 15 14 19 19 N 1.32746 * 120.05854 * 39.66956 * 18 16 15 20 20 C 1.31716 * 122.13697 * 179.97438 * 19 18 16 21 21 C 1.38311 * 121.68849 * 0.02562 * 20 19 18 22 22 C 1.39016 * 119.08856 * 359.97438 * 21 20 19 23 23 N 1.37187 * 134.64801 * 180.02562 * 22 21 20 24 24 H 0.97010 * 125.06282 * 359.95406 * 23 22 21 25 25 C 1.36733 * 109.87723 * 179.32283 * 23 22 21 26 26 C 1.34565 * 109.95253 * 0.60055 * 25 23 22 27 27 C 1.40400 * 120.05762 * 219.39494 * 18 16 15 28 28 C 1.46924 * 118.73837 * 306.39567 * 15 14 13 29 29 H 0.97001 * 120.00386 * 359.73111 * 1 2 3 30 30 H 0.97000 * 120.00334 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.46302 * 301.34223 * 12 10 9 32 32 H 1.09005 * 109.45866 * 61.31200 * 12 10 9 33 33 H 1.09005 * 109.49705 * 58.58931 * 13 12 10 34 34 H 1.08999 * 109.49646 * 178.68575 * 13 12 10 35 35 H 1.09000 * 109.58637 * 174.42527 * 14 13 12 36 36 H 1.08998 * 109.58534 * 294.84772 * 14 13 12 37 37 H 1.08002 * 119.16136 * 179.97438 * 20 19 18 38 38 H 1.07994 * 120.45710 * 180.02562 * 21 20 19 39 39 H 1.08004 * 125.02201 * 180.08832 * 25 23 22 40 40 H 1.07996 * 126.49772 * 179.51176 * 26 25 23 41 41 H 1.09010 * 109.58667 * 293.82243 * 28 15 14 42 42 H 1.08997 * 109.59162 * 173.39654 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0067 5 1 1.8864 2.3993 -1.2092 6 1 1.8965 2.3935 1.2158 7 6 2.0102 -1.2021 -0.0057 8 1 3.0902 -1.2021 -0.0102 9 7 1.3255 -2.3880 -0.0057 10 6 2.0580 -3.6568 -0.0123 11 1 2.9720 -3.5521 0.5723 12 6 1.1839 -4.7544 0.5985 13 6 1.9602 -6.0731 0.6221 14 6 2.3138 -6.4787 -0.8121 15 7 3.0299 -5.3683 -1.4547 16 6 4.2301 -5.5690 -2.0342 17 8 4.7817 -4.6584 -2.6210 18 6 4.8753 -6.8961 -1.9565 19 7 4.1457 -7.9983 -2.0777 20 6 4.6781 -9.2015 -2.0155 21 6 6.0346 -9.3863 -1.8187 22 6 6.8559 -8.2729 -1.6839 23 7 8.2002 -8.0849 -1.4846 24 1 8.8553 -8.7950 -1.3973 25 6 8.4811 -6.7474 -1.4413 26 6 7.3497 -6.0353 -1.5946 27 6 6.2621 -6.9933 -1.7600 28 6 2.4128 -4.0350 -1.4538 29 1 -0.4851 0.8400 0.0039 30 1 0.3555 -2.3881 -0.0014 31 1 0.9096 -4.4762 1.6161 32 1 0.2813 -4.8754 -0.0006 33 1 2.8754 -5.9461 1.2004 34 1 1.3455 -6.8490 1.0786 35 1 2.9505 -7.3632 -0.7953 36 1 1.4004 -6.6940 -1.3667 37 1 4.0391 -10.0658 -2.1199 38 1 6.4502 -10.3820 -1.7713 39 1 9.4646 -6.3250 -1.2966 40 1 7.2634 -4.9588 -1.5953 41 1 1.5074 -4.0510 -2.0607 42 1 3.1148 -3.3070 -1.8604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000231607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:00:59 Heat of formation + Delta-G solvation = 35.765037 kcal Electronic energy + Delta-G solvation = -25952.509903 eV Core-core repulsion = 22318.630869 eV Total energy + Delta-G solvation = -3633.879035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.66887 -41.08844 -39.03865 -38.59583 -36.19444 -33.99603 -33.19882 -32.74656 -31.70406 -30.50570 -29.73945 -26.99435 -25.87463 -24.92885 -23.61381 -23.20989 -22.38622 -21.56435 -20.58216 -19.22674 -19.02659 -18.54156 -17.31240 -16.89733 -16.76765 -16.43835 -16.13134 -15.74295 -15.66574 -15.49699 -15.33629 -15.00849 -14.89679 -14.27831 -14.12181 -13.95020 -13.81601 -13.78142 -13.55085 -13.03678 -12.91755 -12.77714 -12.51594 -12.16667 -11.99184 -11.91625 -11.68378 -11.36485 -11.34062 -11.09505 -10.96865 -10.39851 -9.84842 -9.76085 -9.03517 -8.87537 -7.98515 -5.28153 -0.47129 0.45509 1.43954 1.45712 1.50336 1.55918 1.71862 1.90926 2.08146 2.53637 2.80844 3.16346 3.34551 3.56211 3.76912 3.84179 3.94617 4.04424 4.08234 4.11277 4.24140 4.36648 4.37540 4.40972 4.51412 4.61182 4.69145 4.75054 4.85893 4.89858 4.99986 5.02327 5.07312 5.11087 5.35756 5.42016 5.43676 5.45738 5.51680 5.61040 5.85394 6.23919 6.38628 6.58415 6.84025 7.10162 7.30592 8.01534 8.28401 9.24440 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.003501 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.818792 B = 7995.084164 C = 9053.167708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.068 4.068 3 Si 0.969 3.031 4 H -0.273 1.273 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.246 4.246 8 H 0.065 0.935 9 N -0.728 5.728 10 C 0.170 3.830 11 H 0.031 0.969 12 C -0.117 4.117 13 C -0.121 4.121 14 C 0.098 3.902 15 N -0.587 5.587 16 C 0.560 3.440 17 O -0.580 6.580 18 C 0.109 3.891 19 N -0.479 5.479 20 C 0.085 3.915 21 C -0.137 4.137 22 C 0.113 3.887 23 N -0.570 5.570 24 H 0.442 0.558 25 C 0.094 3.906 26 C -0.235 4.235 27 C -0.141 4.141 28 C 0.106 3.894 29 H 0.253 0.747 30 H 0.378 0.622 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.056 0.944 34 H 0.110 0.890 35 H 0.122 0.878 36 H 0.079 0.921 37 H 0.204 0.796 38 H 0.182 0.818 39 H 0.222 0.778 40 H 0.129 0.871 41 H 0.060 0.940 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.051 -27.685 -0.435 32.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.798 3.202 4 H -0.197 1.197 5 H -0.218 1.218 6 H -0.213 1.213 7 C -0.378 4.378 8 H 0.083 0.917 9 N -0.368 5.368 10 C 0.060 3.940 11 H 0.050 0.950 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.023 4.023 15 N -0.318 5.318 16 C 0.348 3.652 17 O -0.459 6.459 18 C -0.033 4.033 19 N -0.192 5.192 20 C -0.069 4.069 21 C -0.160 4.160 22 C -0.002 4.002 23 N -0.176 5.176 24 H 0.284 0.716 25 C -0.033 4.033 26 C -0.260 4.260 27 C -0.149 4.149 28 C -0.019 4.019 29 H 0.062 0.938 30 H 0.211 0.789 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.128 0.872 35 H 0.139 0.861 36 H 0.097 0.903 37 H 0.220 0.780 38 H 0.199 0.801 39 H 0.239 0.761 40 H 0.147 0.853 41 H 0.078 0.922 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 15.682 -27.101 -0.829 31.322 hybrid contribution 0.868 1.493 -0.128 1.732 sum 16.550 -25.608 -0.957 30.506 Atomic orbital electron populations 1.69800 1.06353 1.26142 1.59100 1.25498 0.96416 1.00821 1.03292 0.85136 0.78030 0.80014 0.76983 1.19747 1.21811 1.21303 1.19566 0.91078 0.85429 1.41684 0.91663 1.42506 1.05542 1.00520 1.88242 1.20610 0.94695 0.86180 0.92520 0.95041 1.21737 0.98466 0.94259 1.01050 1.21904 1.00512 0.97069 0.96446 1.22402 0.98081 0.89252 0.92572 1.48173 1.18306 1.10801 1.54521 1.18473 0.80744 0.87459 0.78553 1.90743 1.65006 1.45138 1.45045 1.20163 0.89690 0.91872 1.01622 1.67609 1.38988 0.98636 1.13993 1.23144 0.93255 0.94293 0.96203 1.21648 0.93363 0.98325 1.02632 1.18473 0.85759 0.94353 1.01653 1.41650 1.05527 1.08132 1.62268 0.71621 1.22575 1.00425 0.81613 0.98642 1.21835 0.91708 0.99066 1.13421 1.20114 0.93312 0.95740 1.05755 1.22315 0.96741 0.82673 1.00191 0.93788 0.78928 0.91692 0.91369 0.92509 0.87192 0.86062 0.90287 0.77974 0.80100 0.76136 0.85284 0.92201 0.93044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.31 13.06 21.65 0.28 -60.02 16 2 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 3 Si 0.97 48.44 29.55 68.60 2.03 50.47 16 4 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 5 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 6 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 7 C -0.25 -14.55 9.93 84.03 0.83 -13.71 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 9 N -0.73 -38.86 5.12 -322.56 -1.65 -40.51 16 10 C 0.17 7.42 2.92 45.07 0.13 7.55 16 11 H 0.03 1.48 8.08 -2.39 -0.02 1.46 16 12 C -0.12 -3.92 5.35 30.62 0.16 -3.76 16 13 C -0.12 -3.14 6.08 30.67 0.19 -2.95 16 14 C 0.10 2.72 6.03 86.36 0.52 3.24 16 15 N -0.59 -21.69 2.97 -822.39 -2.44 -24.13 16 16 C 0.56 22.17 7.43 86.76 0.64 22.81 16 17 O -0.58 -27.49 15.92 -3.92 -0.06 -27.55 16 18 C 0.11 3.44 6.04 42.05 0.25 3.70 16 19 N -0.48 -11.93 7.26 -184.49 -1.34 -13.27 16 20 C 0.08 1.30 11.13 84.73 0.94 2.24 16 21 C -0.14 -1.67 10.14 22.47 0.23 -1.45 16 22 C 0.11 2.01 7.34 39.24 0.29 2.30 16 23 N -0.57 -6.24 6.05 -187.42 -1.13 -7.37 16 24 H 0.44 0.90 8.96 -92.70 -0.83 0.07 16 25 C 0.09 1.34 11.82 83.09 0.98 2.32 16 26 C -0.23 -6.08 10.59 23.41 0.25 -5.83 16 27 C -0.14 -3.91 6.12 -20.03 -0.12 -4.03 16 28 C 0.11 4.62 6.01 86.36 0.52 5.14 16 29 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 30 H 0.38 21.04 7.80 -92.71 -0.72 20.31 16 31 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.07 2.21 8.14 -2.38 -0.02 2.20 16 33 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.12 3.06 4.56 -2.39 -0.01 3.05 16 36 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.20 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.18 0.51 8.06 -2.91 -0.02 0.49 16 39 H 0.22 1.06 8.06 -2.91 -0.02 1.03 16 40 H 0.13 3.96 7.99 -2.91 -0.02 3.94 16 41 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 42 H 0.05 2.61 7.02 -2.39 -0.02 2.60 16 Total: -1.00 -84.16 347.27 1.48 -82.67 By element: Atomic # 1 Polarization: 26.20 SS G_CDS: -0.48 Total: 25.72 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: 6.29 Total: 14.00 kcal Atomic # 7 Polarization: -139.03 SS G_CDS: -6.29 Total: -145.31 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.06 Total: -27.55 kcal Atomic # 14 Polarization: 48.44 SS G_CDS: 2.03 Total: 50.47 kcal Total: -84.16 1.48 -82.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000231607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.440 kcal (2) G-P(sol) polarization free energy of solvation -84.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds