Wall clock time and date at job start Fri Apr 10 2020 23:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86798 * 119.99970 * 2 1 4 4 H 1.48495 * 109.47246 * 269.99766 * 3 2 1 5 5 H 1.48495 * 109.47226 * 30.00166 * 3 2 1 6 6 H 1.48508 * 109.47031 * 150.00035 * 3 2 1 7 7 C 1.38811 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99811 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00523 * 359.97438 * 7 2 1 10 10 C 1.46499 * 120.00453 * 179.97438 * 9 7 2 11 11 H 1.08995 * 109.49400 * 325.00601 * 10 9 7 12 12 C 1.53037 * 109.52628 * 204.91813 * 10 9 7 13 13 C 1.53036 * 109.53816 * 178.66729 * 12 10 9 14 14 C 1.53198 * 109.31203 * 61.36841 * 13 12 10 15 15 N 1.46925 * 108.77458 * 305.36513 * 14 13 12 16 16 C 1.34775 * 120.63162 * 233.58516 * 15 14 13 17 17 O 1.21636 * 120.00073 * 174.16748 * 16 15 14 18 18 C 1.47233 * 119.99787 * 354.16875 * 16 15 14 19 19 C 1.38943 * 120.85645 * 306.35392 * 18 16 15 20 20 C 1.39742 * 119.28767 * 180.02562 * 19 18 16 21 21 C 1.35116 * 121.14647 * 359.96917 * 20 19 18 22 22 N 1.36150 * 121.72157 * 0.03184 * 21 20 19 23 23 C 1.36997 * 132.65101 * 179.97438 * 22 21 20 24 24 C 1.34967 * 107.15432 * 179.30915 * 23 22 21 25 25 N 1.33744 * 108.60157 * 0.58090 * 24 23 22 26 26 C 1.31984 * 109.16690 * 359.48479 * 25 24 23 27 27 C 1.46924 * 118.74084 * 53.60671 * 15 14 13 28 28 H 0.97002 * 119.99944 * 359.97438 * 1 2 3 29 29 H 0.97008 * 119.99783 * 359.97438 * 9 7 2 30 30 H 1.08998 * 109.46280 * 298.68784 * 12 10 9 31 31 H 1.09004 * 109.45881 * 58.65088 * 12 10 9 32 32 H 1.08997 * 109.50164 * 301.41663 * 13 12 10 33 33 H 1.08997 * 109.52925 * 181.33398 * 13 12 10 34 34 H 1.08996 * 109.58864 * 185.57671 * 14 13 12 35 35 H 1.08996 * 109.58444 * 65.15311 * 14 13 12 36 36 H 1.07999 * 120.35921 * 0.02637 * 19 18 16 37 37 H 1.07998 * 119.42751 * 180.02562 * 20 19 18 38 38 H 1.07996 * 119.13969 * 180.02562 * 21 20 19 39 39 H 1.08005 * 126.42256 * 0.02562 * 23 22 21 40 40 H 1.07998 * 125.70155 * 180.02562 * 24 23 22 41 41 H 1.08995 * 109.58840 * 186.60203 * 27 15 14 42 42 H 1.09006 * 109.58654 * 66.17721 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0581 -3.6568 0.0016 11 1 2.9684 -3.5513 -0.5884 12 6 1.1805 -4.7541 -0.6049 13 6 1.9573 -6.0723 -0.6356 14 6 2.3204 -6.4797 0.7959 15 7 3.0402 -5.3698 1.4353 16 6 4.2442 -5.5708 2.0068 17 8 4.8777 -4.6264 2.4385 18 6 4.7925 -6.9334 2.1084 19 6 4.0568 -7.9557 2.6951 20 6 4.6094 -9.2367 2.7748 21 6 5.8441 -9.4965 2.2913 22 7 6.6029 -8.5282 1.7080 23 6 7.8557 -8.5387 1.1537 24 6 8.1045 -7.2891 0.7084 25 7 7.0472 -6.5187 0.9867 26 6 6.1261 -7.2478 1.5882 27 6 2.4224 -4.0368 1.4403 28 1 -0.4850 0.8401 0.0004 29 1 0.3555 -2.3881 0.0023 30 1 0.2819 -4.8761 -0.0002 31 1 0.8995 -4.4745 -1.6204 32 1 2.8686 -5.9441 -1.2196 33 1 1.3406 -6.8481 -1.0892 34 1 2.9575 -7.3638 0.7737 35 1 1.4108 -6.6963 1.3560 36 1 3.0685 -7.7624 3.0853 37 1 4.0394 -10.0331 3.2299 38 1 6.2394 -10.4985 2.3696 39 1 8.5155 -9.3903 1.0762 40 1 9.0099 -6.9634 0.2181 41 1 3.1267 -3.3091 1.8433 42 1 1.5210 -4.0541 2.0530 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000449619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:01:03 Heat of formation + Delta-G solvation = 80.640163 kcal Electronic energy + Delta-G solvation = -25968.532088 eV Core-core repulsion = 22336.598985 eV Total energy + Delta-G solvation = -3631.933103 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.92282 -39.92213 -37.52580 -37.13390 -34.51838 -33.66644 -32.19993 -31.14733 -30.51753 -29.20612 -28.09000 -25.80978 -24.12096 -23.84532 -22.88413 -22.09072 -21.84217 -20.43065 -19.19891 -17.85798 -17.57423 -17.03760 -16.50185 -16.18084 -15.81249 -15.67569 -15.02182 -14.59294 -14.27565 -14.14315 -13.85990 -13.78599 -13.56564 -13.32746 -12.94889 -12.62047 -12.44216 -12.35432 -12.28213 -12.10292 -11.38195 -11.15523 -10.89792 -10.79545 -10.60092 -10.52309 -10.22205 -10.15053 -9.78013 -9.76576 -9.56545 -9.07496 -9.02522 -8.32495 -8.12922 -6.95234 -5.73959 -3.03427 0.17362 1.00157 2.19513 2.60204 2.80205 3.10086 3.39914 3.49806 3.54912 3.58713 3.87530 4.06727 4.33903 4.44798 4.57571 4.63625 4.92652 4.94282 5.12168 5.15868 5.22222 5.27912 5.45636 5.50927 5.53220 5.56577 5.67037 5.67712 5.83251 5.95980 6.06702 6.08130 6.20528 6.25344 6.38638 6.38836 6.52812 6.73381 6.78046 6.88036 7.05748 7.63226 7.72595 7.78706 8.36873 8.44724 9.56449 10.09965 10.45571 11.48357 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019602 B = 0.003393 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1428.083766 B = 8249.157081 C = 9011.280704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.241 4.241 8 H 0.073 0.927 9 N -0.718 5.718 10 C 0.168 3.832 11 H 0.052 0.948 12 C -0.125 4.125 13 C -0.130 4.130 14 C 0.104 3.896 15 N -0.598 5.598 16 C 0.564 3.436 17 O -0.513 6.513 18 C -0.071 4.071 19 C -0.070 4.070 20 C -0.149 4.149 21 C 0.072 3.928 22 N -0.370 5.370 23 C -0.099 4.099 24 C 0.031 3.969 25 N -0.471 5.471 26 C 0.249 3.751 27 C 0.094 3.906 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.164 0.836 39 H 0.185 0.815 40 H 0.183 0.817 41 H 0.092 0.908 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.537 -27.141 3.593 28.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.057 3.943 11 H 0.070 0.930 12 C -0.164 4.164 13 C -0.169 4.169 14 C -0.019 4.019 15 N -0.332 5.332 16 C 0.349 3.651 17 O -0.388 6.388 18 C -0.077 4.077 19 C -0.094 4.094 20 C -0.170 4.170 21 C -0.051 4.051 22 N -0.043 5.043 23 C -0.229 4.229 24 C -0.119 4.119 25 N -0.189 5.189 26 C 0.002 3.998 27 C -0.030 4.030 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.168 0.832 37 H 0.174 0.826 38 H 0.181 0.819 39 H 0.202 0.798 40 H 0.200 0.800 41 H 0.111 0.889 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.004 -25.634 3.605 27.407 hybrid contribution 0.308 -0.124 0.217 0.397 sum 9.312 -25.758 3.823 27.655 Atomic orbital electron populations 1.69665 1.05111 1.25703 1.57716 1.24734 0.95510 0.97723 1.02732 0.86191 0.78883 0.83675 0.77545 1.21693 1.21775 1.20518 1.19306 0.91195 0.83958 1.42721 0.90953 1.42371 1.05766 0.99588 1.88094 1.20495 0.94996 0.86416 0.92436 0.92971 1.21818 0.98609 0.94066 1.01860 1.21877 1.00952 0.98240 0.95797 1.21844 0.96712 0.89242 0.94092 1.48177 1.18337 1.11403 1.55290 1.17623 0.81180 0.87089 0.79170 1.90863 1.58054 1.42159 1.47715 1.20253 0.90103 0.95404 1.01939 1.21591 0.99870 0.91043 0.96848 1.20614 0.94823 0.98173 1.03358 1.21607 0.92563 0.93679 0.97258 1.42891 1.13285 1.09926 1.38182 1.22681 0.87373 1.02392 1.10471 1.22675 0.98498 0.89381 1.01329 1.70762 1.00799 1.30569 1.16803 1.21587 0.95376 0.80429 1.02380 1.22835 0.97672 0.81217 1.01270 0.93528 0.78091 0.91990 0.91385 0.91597 0.91011 0.90450 0.91209 0.83181 0.82619 0.81885 0.79799 0.80013 0.88934 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.41 13.06 55.49 0.72 -27.68 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 23.19 29.55 -169.99 -5.02 18.17 16 4 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.24 -6.88 9.93 -15.06 -0.15 -7.03 16 8 H 0.07 2.08 7.83 -52.48 -0.41 1.67 16 9 N -0.72 -18.17 5.12 -53.31 -0.27 -18.45 16 10 C 0.17 3.45 2.92 -67.81 -0.20 3.25 16 11 H 0.05 1.18 8.08 -51.93 -0.42 0.76 16 12 C -0.13 -2.01 5.36 -26.69 -0.14 -2.15 16 13 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 14 C 0.10 1.23 5.59 -3.71 -0.02 1.21 16 15 N -0.60 -9.68 2.97 -174.10 -0.52 -10.20 16 16 C 0.56 10.06 7.23 -12.61 -0.09 9.97 16 17 O -0.51 -11.59 16.52 5.25 0.09 -11.50 16 18 C -0.07 -1.00 4.79 -102.63 -0.49 -1.49 16 19 C -0.07 -0.64 7.89 -38.76 -0.31 -0.95 16 20 C -0.15 -0.92 9.91 -40.13 -0.40 -1.31 16 21 C 0.07 0.49 10.88 -16.75 -0.18 0.30 16 22 N -0.37 -3.94 2.94 -61.09 -0.18 -4.12 16 23 C -0.10 -0.92 11.76 -16.41 -0.19 -1.11 16 24 C 0.03 0.37 11.83 -17.88 -0.21 0.16 16 25 N -0.47 -7.89 11.30 -11.32 -0.13 -8.02 16 26 C 0.25 3.70 7.82 -154.13 -1.20 2.49 16 27 C 0.09 1.83 6.03 -3.71 -0.02 1.81 16 28 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.39 10.15 7.80 -40.82 -0.32 9.83 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 0.78 5.38 -51.93 -0.28 0.50 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.15 1.07 7.77 -52.49 -0.41 0.67 16 37 H 0.16 0.37 8.06 -52.49 -0.42 -0.05 16 38 H 0.16 0.45 8.06 -52.49 -0.42 0.03 16 39 H 0.18 0.89 8.06 -52.48 -0.42 0.47 16 40 H 0.18 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.09 2.13 7.00 -51.93 -0.36 1.77 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -37.81 349.54 -9.47 -47.28 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -5.56 Total: 6.32 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -3.87 Total: 2.94 kcal Atomic # 7 Polarization: -68.10 SS G_CDS: -0.37 Total: -68.47 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -37.81 -9.47 -47.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000449619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.923 kcal (2) G-P(sol) polarization free energy of solvation -37.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds