Wall clock time and date at job start Fri Apr 10 2020 23:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99914 * 2 1 4 4 H 1.48503 * 109.46757 * 270.27308 * 3 2 1 5 5 H 1.48504 * 109.47054 * 30.26902 * 3 2 1 6 6 H 1.48503 * 109.47342 * 150.27413 * 3 2 1 7 7 C 1.38810 * 120.00239 * 180.27139 * 2 1 3 8 8 H 1.08007 * 120.00084 * 179.73137 * 7 2 1 9 9 N 1.36937 * 120.00023 * 359.72043 * 7 2 1 10 10 C 1.46503 * 120.00225 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49295 * 34.94469 * 10 9 7 12 12 C 1.53036 * 109.49574 * 155.00703 * 10 9 7 13 13 C 1.53043 * 109.53840 * 181.32319 * 12 10 9 14 14 C 1.53200 * 109.30745 * 298.63357 * 13 12 10 15 15 N 1.46918 * 108.77522 * 54.63625 * 14 13 12 16 16 C 1.34778 * 120.63520 * 126.41394 * 15 14 13 17 17 O 1.21627 * 120.00545 * 175.80566 * 16 15 14 18 18 C 1.47226 * 119.99272 * 355.80774 * 16 15 14 19 19 C 1.38945 * 120.86588 * 53.79510 * 18 16 15 20 20 C 1.39740 * 119.29381 * 179.97438 * 19 18 16 21 21 C 1.35110 * 121.14316 * 0.02562 * 20 19 18 22 22 N 1.36150 * 121.72418 * 0.02562 * 21 20 19 23 23 C 1.36999 * 132.64946 * 179.97438 * 22 21 20 24 24 C 1.34966 * 107.14993 * 179.28841 * 23 22 21 25 25 N 1.33740 * 108.60502 * 0.60770 * 24 23 22 26 26 C 1.31978 * 109.16689 * 359.45769 * 25 24 23 27 27 C 1.46931 * 118.74149 * 306.38560 * 15 14 13 28 28 H 0.96994 * 120.00062 * 359.73138 * 1 2 3 29 29 H 0.97001 * 119.99972 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.45849 * 301.33611 * 12 10 9 31 31 H 1.08994 * 109.46122 * 61.31195 * 12 10 9 32 32 H 1.09001 * 109.49605 * 58.57829 * 13 12 10 33 33 H 1.08995 * 109.50158 * 178.68537 * 13 12 10 34 34 H 1.08997 * 109.58567 * 174.42392 * 14 13 12 35 35 H 1.09001 * 109.58495 * 294.70233 * 14 13 12 36 36 H 1.07997 * 120.35024 * 359.97438 * 19 18 16 37 37 H 1.08002 * 119.42782 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.13603 * 179.97438 * 21 20 19 39 39 H 1.08008 * 126.42517 * 359.97302 * 23 22 21 40 40 H 1.08003 * 125.69290 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.58893 * 293.83135 * 27 15 14 42 42 H 1.09001 * 109.59064 * 173.39789 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0497 -1.4001 5 1 1.4504 2.6511 0.7057 6 1 3.5507 1.4386 0.6942 7 6 2.0103 -1.2021 -0.0057 8 1 3.0903 -1.2020 -0.0101 9 7 1.3257 -2.3880 -0.0055 10 6 2.0582 -3.6568 -0.0121 11 1 2.9722 -3.5521 0.5725 12 6 1.1840 -4.7544 0.5987 13 6 1.9604 -6.0731 0.6225 14 6 2.3140 -6.4787 -0.8119 15 7 3.0301 -5.3683 -1.4544 16 6 4.2302 -5.5690 -2.0340 17 8 4.7780 -4.6604 -2.6287 18 6 4.8781 -6.8882 -1.9473 19 6 4.2084 -8.0387 -2.3453 20 6 4.8549 -9.2739 -2.2494 21 6 6.1171 -9.3671 -1.7766 22 7 6.8135 -8.2688 -1.3736 23 6 8.0762 -8.1044 -0.8682 24 6 8.2508 -6.7831 -0.6554 25 7 7.1292 -6.1431 -1.0033 26 6 6.2479 -7.0213 -1.4435 27 6 2.4129 -4.0350 -1.4536 28 1 -0.4850 0.8400 0.0039 29 1 0.3557 -2.3881 -0.0018 30 1 0.9099 -4.4761 1.6163 31 1 0.2815 -4.8753 -0.0004 32 1 2.8756 -5.9460 1.2007 33 1 1.3458 -6.8490 1.0789 34 1 2.9508 -7.3631 -0.7950 35 1 1.4008 -6.6965 -1.3657 36 1 3.1991 -7.9790 -2.7248 37 1 4.3365 -10.1695 -2.5586 38 1 6.5855 -10.3384 -1.7160 39 1 8.8006 -8.8845 -0.6857 40 1 9.1435 -6.3209 -0.2605 41 1 1.5076 -4.0510 -2.0604 42 1 3.1149 -3.3070 -1.8602 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000449621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:01:05 Heat of formation + Delta-G solvation = 82.681983 kcal Electronic energy + Delta-G solvation = -26007.541422 eV Core-core repulsion = 22375.696859 eV Total energy + Delta-G solvation = -3631.844563 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.91844 -39.94618 -37.51819 -37.15322 -34.53957 -33.66480 -32.19928 -31.14857 -30.51524 -29.23491 -28.06232 -25.84452 -24.09854 -23.86990 -22.88813 -22.09506 -21.83731 -20.43017 -19.17869 -17.88095 -17.61727 -17.04219 -16.45659 -16.18779 -15.81003 -15.67475 -15.02195 -14.58062 -14.24308 -14.15784 -13.95343 -13.79470 -13.53725 -13.35607 -12.93237 -12.57334 -12.47144 -12.37630 -12.27642 -12.08089 -11.37699 -11.17593 -10.88316 -10.79331 -10.58556 -10.53119 -10.21068 -10.15599 -9.78606 -9.76352 -9.56011 -9.07142 -9.02398 -8.32840 -8.11639 -6.95648 -5.74197 -3.03733 0.17609 1.00160 2.19443 2.61029 2.80729 3.09835 3.40701 3.50036 3.55114 3.57742 3.87496 4.07114 4.34436 4.43140 4.57208 4.63382 4.92570 4.94051 5.11270 5.16268 5.22796 5.27628 5.44004 5.50973 5.53197 5.56233 5.66196 5.67148 5.82693 5.95704 6.06729 6.07882 6.20229 6.24579 6.38490 6.39660 6.52478 6.73889 6.77210 6.87439 7.05253 7.63083 7.73637 7.78173 8.36675 8.44469 9.56190 10.09585 10.45184 11.48118 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018626 B = 0.003498 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.938561 B = 8003.621038 C = 8878.345814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.072 0.928 9 N -0.717 5.717 10 C 0.168 3.832 11 H 0.052 0.948 12 C -0.125 4.125 13 C -0.130 4.130 14 C 0.098 3.902 15 N -0.597 5.597 16 C 0.564 3.436 17 O -0.514 6.514 18 C -0.070 4.070 19 C -0.072 4.072 20 C -0.149 4.149 21 C 0.072 3.928 22 N -0.370 5.370 23 C -0.099 4.099 24 C 0.032 3.968 25 N -0.470 5.470 26 C 0.250 3.750 27 C 0.095 3.905 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.164 0.836 39 H 0.185 0.815 40 H 0.183 0.817 41 H 0.064 0.936 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.358 -26.881 -2.010 28.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.358 5.358 10 C 0.056 3.944 11 H 0.070 0.930 12 C -0.164 4.164 13 C -0.169 4.169 14 C -0.025 4.025 15 N -0.331 5.331 16 C 0.349 3.651 17 O -0.389 6.389 18 C -0.076 4.076 19 C -0.096 4.096 20 C -0.170 4.170 21 C -0.051 4.051 22 N -0.043 5.043 23 C -0.229 4.229 24 C -0.118 4.118 25 N -0.189 5.189 26 C 0.003 3.997 27 C -0.029 4.029 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.089 0.911 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.181 0.819 39 H 0.202 0.798 40 H 0.200 0.800 41 H 0.082 0.918 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.720 -25.368 -2.220 27.257 hybrid contribution 0.373 -0.113 -0.063 0.394 sum 10.092 -25.481 -2.284 27.502 Atomic orbital electron populations 1.69660 1.05115 1.25720 1.57665 1.24733 0.95506 0.97726 1.02692 0.86189 0.78751 0.83665 0.77650 1.21582 1.21808 1.20616 1.19303 0.91183 0.83960 1.42796 0.90968 1.42372 1.05779 0.99580 1.88055 1.20501 0.95036 0.86447 0.92367 0.93001 1.21822 0.98643 0.94067 1.01847 1.21880 1.00940 0.98247 0.95800 1.21973 0.96893 0.89516 0.94109 1.48172 1.18553 1.11340 1.55023 1.17605 0.81016 0.86502 0.79958 1.90857 1.63401 1.43002 1.41617 1.20239 0.89651 0.95279 1.02458 1.21602 1.00281 0.90398 0.97340 1.20608 0.93879 0.99134 1.03415 1.21606 0.93598 0.90739 0.99118 1.42890 1.12508 1.07981 1.40916 1.22683 0.86958 1.00367 1.12899 1.22678 0.97645 0.90041 1.01485 1.70762 1.00747 1.30045 1.17307 1.21554 0.94547 0.80005 1.03594 1.22845 0.97790 0.81109 1.01183 0.93513 0.78075 0.91388 0.91977 0.91647 0.91017 0.90057 0.91082 0.83122 0.82609 0.81880 0.79784 0.79999 0.91794 0.88968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.42 13.06 55.49 0.72 -27.69 16 2 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 3 Si 0.91 23.21 29.55 -169.99 -5.02 18.19 16 4 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.24 -6.91 9.93 -15.06 -0.15 -7.05 16 8 H 0.07 2.07 7.83 -52.48 -0.41 1.66 16 9 N -0.72 -18.19 5.12 -53.31 -0.27 -18.46 16 10 C 0.17 3.44 2.92 -67.81 -0.20 3.25 16 11 H 0.05 1.17 8.08 -51.93 -0.42 0.75 16 12 C -0.13 -2.00 5.35 -26.69 -0.14 -2.15 16 13 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 14 C 0.10 1.15 5.55 -3.71 -0.02 1.13 16 15 N -0.60 -9.70 2.97 -174.11 -0.52 -10.22 16 16 C 0.56 10.08 7.26 -12.61 -0.09 9.99 16 17 O -0.51 -11.59 16.53 5.25 0.09 -11.50 16 18 C -0.07 -0.99 5.08 -102.63 -0.52 -1.51 16 19 C -0.07 -0.66 7.53 -38.76 -0.29 -0.95 16 20 C -0.15 -0.92 9.91 -40.13 -0.40 -1.32 16 21 C 0.07 0.49 10.88 -16.75 -0.18 0.31 16 22 N -0.37 -3.98 2.94 -61.09 -0.18 -4.16 16 23 C -0.10 -0.93 11.76 -16.40 -0.19 -1.13 16 24 C 0.03 0.38 11.83 -17.88 -0.21 0.17 16 25 N -0.47 -7.99 11.30 -11.32 -0.13 -8.12 16 26 C 0.25 3.75 7.81 -154.13 -1.20 2.55 16 27 C 0.09 1.86 6.01 -3.71 -0.02 1.84 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.19 16 29 H 0.39 10.17 7.80 -40.82 -0.32 9.85 16 30 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 31 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.78 4.71 -51.93 -0.24 0.54 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.15 1.04 7.36 -52.49 -0.39 0.66 16 37 H 0.16 0.36 8.06 -52.49 -0.42 -0.06 16 38 H 0.16 0.46 8.06 -52.48 -0.42 0.03 16 39 H 0.19 0.92 8.06 -52.48 -0.42 0.49 16 40 H 0.18 1.61 8.06 -52.48 -0.42 1.18 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.09 2.14 7.03 -51.93 -0.36 1.77 16 LS Contribution 348.41 15.07 5.25 5.25 Total: -1.00 -37.92 348.41 -9.45 -47.37 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: -5.51 Total: 6.41 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -3.88 Total: 2.94 kcal Atomic # 7 Polarization: -68.28 SS G_CDS: -0.37 Total: -68.65 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -5.02 Total: 18.19 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -37.92 -9.45 -47.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000449621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.053 kcal (2) G-P(sol) polarization free energy of solvation -37.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds