Wall clock time and date at job start Fri Apr 10 2020 23:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 119.99914 * 2 1 4 4 H 1.48503 * 109.46757 * 270.27308 * 3 2 1 5 5 H 1.48504 * 109.47054 * 30.26902 * 3 2 1 6 6 H 1.48503 * 109.47342 * 150.27413 * 3 2 1 7 7 C 1.38810 * 120.00239 * 180.27139 * 2 1 3 8 8 H 1.08007 * 120.00084 * 179.73137 * 7 2 1 9 9 N 1.36937 * 120.00023 * 359.72043 * 7 2 1 10 10 C 1.46503 * 120.00225 * 179.97438 * 9 7 2 11 11 H 1.09001 * 109.49295 * 34.94469 * 10 9 7 12 12 C 1.53036 * 109.49574 * 155.00703 * 10 9 7 13 13 C 1.53043 * 109.53840 * 181.32319 * 12 10 9 14 14 C 1.53200 * 109.30745 * 298.63357 * 13 12 10 15 15 N 1.46918 * 108.77522 * 54.63625 * 14 13 12 16 16 C 1.34778 * 120.63520 * 126.41394 * 15 14 13 17 17 O 1.21627 * 120.00545 * 175.80566 * 16 15 14 18 18 C 1.47226 * 119.99272 * 355.80774 * 16 15 14 19 19 C 1.38945 * 120.86588 * 53.79510 * 18 16 15 20 20 C 1.39740 * 119.29381 * 179.97438 * 19 18 16 21 21 C 1.35110 * 121.14316 * 0.02562 * 20 19 18 22 22 N 1.36150 * 121.72418 * 0.02562 * 21 20 19 23 23 C 1.36999 * 132.64946 * 179.97438 * 22 21 20 24 24 C 1.34966 * 107.14993 * 179.28841 * 23 22 21 25 25 N 1.33740 * 108.60502 * 0.60770 * 24 23 22 26 26 C 1.31978 * 109.16689 * 359.45769 * 25 24 23 27 27 C 1.46931 * 118.74149 * 306.38560 * 15 14 13 28 28 H 0.96994 * 120.00062 * 359.73138 * 1 2 3 29 29 H 0.97001 * 119.99972 * 0.02562 * 9 7 2 30 30 H 1.09005 * 109.45849 * 301.33611 * 12 10 9 31 31 H 1.08994 * 109.46122 * 61.31195 * 12 10 9 32 32 H 1.09001 * 109.49605 * 58.57829 * 13 12 10 33 33 H 1.08995 * 109.50158 * 178.68537 * 13 12 10 34 34 H 1.08997 * 109.58567 * 174.42392 * 14 13 12 35 35 H 1.09001 * 109.58495 * 294.70233 * 14 13 12 36 36 H 1.07997 * 120.35024 * 359.97438 * 19 18 16 37 37 H 1.08002 * 119.42782 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.13603 * 179.97438 * 21 20 19 39 39 H 1.08008 * 126.42517 * 359.97302 * 23 22 21 40 40 H 1.08003 * 125.69290 * 180.02562 * 24 23 22 41 41 H 1.08997 * 109.58893 * 293.83135 * 27 15 14 42 42 H 1.09001 * 109.59064 * 173.39789 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4918 2.0497 -1.4001 5 1 1.4504 2.6511 0.7057 6 1 3.5507 1.4386 0.6942 7 6 2.0103 -1.2021 -0.0057 8 1 3.0903 -1.2020 -0.0101 9 7 1.3257 -2.3880 -0.0055 10 6 2.0582 -3.6568 -0.0121 11 1 2.9722 -3.5521 0.5725 12 6 1.1840 -4.7544 0.5987 13 6 1.9604 -6.0731 0.6225 14 6 2.3140 -6.4787 -0.8119 15 7 3.0301 -5.3683 -1.4544 16 6 4.2302 -5.5690 -2.0340 17 8 4.7780 -4.6604 -2.6287 18 6 4.8781 -6.8882 -1.9473 19 6 4.2084 -8.0387 -2.3453 20 6 4.8549 -9.2739 -2.2494 21 6 6.1171 -9.3671 -1.7766 22 7 6.8135 -8.2688 -1.3736 23 6 8.0762 -8.1044 -0.8682 24 6 8.2508 -6.7831 -0.6554 25 7 7.1292 -6.1431 -1.0033 26 6 6.2479 -7.0213 -1.4435 27 6 2.4129 -4.0350 -1.4536 28 1 -0.4850 0.8400 0.0039 29 1 0.3557 -2.3881 -0.0018 30 1 0.9099 -4.4761 1.6163 31 1 0.2815 -4.8753 -0.0004 32 1 2.8756 -5.9460 1.2007 33 1 1.3458 -6.8490 1.0789 34 1 2.9508 -7.3631 -0.7950 35 1 1.4008 -6.6965 -1.3657 36 1 3.1991 -7.9790 -2.7248 37 1 4.3365 -10.1695 -2.5586 38 1 6.5855 -10.3384 -1.7160 39 1 8.8006 -8.8845 -0.6857 40 1 9.1435 -6.3209 -0.2605 41 1 1.5076 -4.0510 -2.0604 42 1 3.1149 -3.3070 -1.8602 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000449621.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:01:04 Heat of formation + Delta-G solvation = 55.477634 kcal Electronic energy + Delta-G solvation = -26008.721091 eV Core-core repulsion = 22375.696859 eV Total energy + Delta-G solvation = -3633.024232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.70207 -41.24519 -38.73610 -38.16891 -36.26142 -34.72388 -33.75450 -32.77605 -31.30861 -30.35828 -29.50089 -27.00840 -25.92078 -24.95706 -23.73548 -23.23100 -22.98966 -21.76443 -20.42434 -19.18826 -18.85688 -18.46813 -17.40525 -17.12036 -16.93281 -16.63921 -16.50760 -16.05157 -15.59150 -15.47981 -15.21923 -15.00859 -14.89971 -14.51549 -14.10698 -13.94793 -13.75994 -13.47259 -13.21218 -13.07146 -12.93161 -12.85452 -12.52961 -12.26301 -12.18391 -11.93473 -11.84401 -11.65894 -11.38458 -11.18466 -11.10861 -10.89046 -9.85896 -9.76313 -9.05227 -8.89478 -8.01724 -5.30826 -0.55413 0.29730 1.29188 1.41423 1.43736 1.52168 1.73351 1.93728 1.98475 2.45951 2.51206 3.12243 3.30070 3.31458 3.66631 3.72491 3.85020 3.91589 3.97435 4.04181 4.17901 4.28049 4.34137 4.37137 4.48316 4.56754 4.57478 4.71396 4.77320 4.83940 4.86987 4.94311 5.01885 5.07393 5.10363 5.35918 5.40060 5.42700 5.45718 5.54530 5.60231 6.09467 6.21549 6.36877 6.92441 7.06999 7.28339 7.98988 8.26555 9.20715 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018626 B = 0.003498 C = 0.003153 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.938561 B = 8003.621038 C = 8878.345814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.063 4.063 3 Si 0.966 3.034 4 H -0.288 1.288 5 H -0.284 1.284 6 H -0.277 1.277 7 C -0.249 4.249 8 H 0.058 0.942 9 N -0.727 5.727 10 C 0.167 3.833 11 H 0.020 0.980 12 C -0.116 4.116 13 C -0.122 4.122 14 C 0.094 3.906 15 N -0.595 5.595 16 C 0.559 3.441 17 O -0.584 6.584 18 C -0.132 4.132 19 C -0.032 4.032 20 C -0.147 4.147 21 C 0.084 3.916 22 N -0.372 5.372 23 C -0.074 4.074 24 C -0.006 4.006 25 N -0.550 5.550 26 C 0.221 3.779 27 C 0.110 3.890 28 H 0.255 0.745 29 H 0.380 0.620 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.048 0.952 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.104 0.896 36 H 0.177 0.823 37 H 0.211 0.789 38 H 0.217 0.783 39 H 0.236 0.764 40 H 0.196 0.804 41 H 0.070 0.930 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.095 -32.451 -2.045 33.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.610 5.610 2 C -0.256 4.256 3 Si 0.795 3.205 4 H -0.215 1.215 5 H -0.210 1.210 6 H -0.203 1.203 7 C -0.381 4.381 8 H 0.076 0.924 9 N -0.367 5.367 10 C 0.057 3.943 11 H 0.038 0.962 12 C -0.154 4.154 13 C -0.160 4.160 14 C -0.027 4.027 15 N -0.327 5.327 16 C 0.348 3.652 17 O -0.465 6.465 18 C -0.138 4.138 19 C -0.056 4.056 20 C -0.167 4.167 21 C -0.037 4.037 22 N -0.045 5.045 23 C -0.203 4.203 24 C -0.154 4.154 25 N -0.270 5.270 26 C -0.026 4.026 27 C -0.016 4.016 28 H 0.063 0.937 29 H 0.213 0.787 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.136 0.864 34 H 0.128 0.872 35 H 0.122 0.878 36 H 0.194 0.806 37 H 0.228 0.772 38 H 0.234 0.766 39 H 0.252 0.748 40 H 0.213 0.787 41 H 0.088 0.912 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.467 -31.021 -2.230 32.510 hybrid contribution 0.509 1.415 -0.071 1.506 sum 9.977 -29.606 -2.301 31.326 Atomic orbital electron populations 1.69773 1.06141 1.26268 1.58860 1.25437 0.96425 1.00603 1.03141 0.85261 0.77730 0.80010 0.77507 1.21493 1.21023 1.20271 1.19474 0.90845 0.85691 1.42088 0.92353 1.42455 1.05537 1.00410 1.88304 1.20633 0.94453 0.86434 0.92752 0.96186 1.21730 0.98563 0.94087 1.01039 1.21877 1.00371 0.97201 0.96555 1.22382 0.98218 0.88600 0.93460 1.48193 1.18672 1.10920 1.54956 1.18346 0.80656 0.87745 0.78458 1.90792 1.64987 1.45956 1.44724 1.19867 0.90521 0.94407 1.08991 1.22112 1.00812 0.89857 0.92780 1.21246 0.93743 0.99337 1.02417 1.22712 0.93743 0.91259 0.96010 1.43160 1.12822 1.07717 1.40797 1.23366 0.86840 1.00193 1.09910 1.23136 0.97429 0.91800 1.02996 1.70623 1.03139 1.33093 1.20174 1.21615 0.94870 0.81624 1.04487 1.22253 0.96739 0.82642 0.99964 0.93661 0.78712 0.92048 0.90498 0.93335 0.86409 0.87155 0.87817 0.80613 0.77234 0.76611 0.74788 0.78689 0.91186 0.93992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.03 13.06 21.65 0.28 -59.75 16 2 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 3 Si 0.97 49.38 29.55 68.60 2.03 51.40 16 4 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 5 H -0.28 -14.11 7.11 99.48 0.71 -13.41 16 6 H -0.28 -13.88 7.11 99.48 0.71 -13.17 16 7 C -0.25 -15.05 9.93 84.03 0.83 -14.21 16 8 H 0.06 3.61 7.83 -2.91 -0.02 3.58 16 9 N -0.73 -38.83 5.12 -322.56 -1.65 -40.48 16 10 C 0.17 7.27 2.92 45.07 0.13 7.40 16 11 H 0.02 0.98 8.08 -2.39 -0.02 0.97 16 12 C -0.12 -3.65 5.35 30.62 0.16 -3.48 16 13 C -0.12 -2.74 6.08 30.68 0.19 -2.55 16 14 C 0.09 1.95 5.55 86.37 0.48 2.43 16 15 N -0.60 -19.92 2.97 -823.00 -2.45 -22.37 16 16 C 0.56 21.30 7.26 86.60 0.63 21.93 16 17 O -0.58 -29.29 16.53 -4.12 -0.07 -29.36 16 18 C -0.13 -3.70 5.08 -18.58 -0.09 -3.79 16 19 C -0.03 -0.46 7.53 22.80 0.17 -0.29 16 20 C -0.15 -0.86 9.91 21.91 0.22 -0.64 16 21 C 0.08 0.65 10.88 83.30 0.91 1.56 16 22 N -0.37 -6.95 2.94 -347.19 -1.02 -7.97 16 23 C -0.07 -1.21 11.76 83.13 0.98 -0.23 16 24 C -0.01 -0.14 11.83 83.65 0.99 0.85 16 25 N -0.55 -20.13 11.30 -189.71 -2.14 -22.28 16 26 C 0.22 6.74 7.81 135.76 1.06 7.80 16 27 C 0.11 4.61 6.01 86.36 0.52 5.13 16 28 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.38 20.85 7.80 -92.71 -0.72 20.12 16 30 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.11 1.68 4.71 -2.39 -0.01 1.67 16 35 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.18 1.52 7.36 -2.91 -0.02 1.50 16 37 H 0.21 -0.94 8.06 -2.91 -0.02 -0.96 16 38 H 0.22 -0.62 8.06 -2.91 -0.02 -0.65 16 39 H 0.24 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.20 3.74 8.06 -2.91 -0.02 3.71 16 41 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 42 H 0.04 2.17 7.03 -2.39 -0.02 2.15 16 Total: -1.00 -96.44 348.41 2.94 -93.50 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.33 Total: 18.74 kcal Atomic # 6 Polarization: 10.92 SS G_CDS: 7.64 Total: 18.56 kcal Atomic # 7 Polarization: -145.86 SS G_CDS: -6.98 Total: -152.85 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.07 Total: -29.36 kcal Atomic # 14 Polarization: 49.38 SS G_CDS: 2.03 Total: 51.40 kcal Total: -96.44 2.94 -93.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000449621.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.975 kcal (2) G-P(sol) polarization free energy of solvation -96.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds