Wall clock time and date at job start Fri Apr 10 2020 23:01:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00366 * 2 1 4 4 H 1.48498 * 109.46752 * 269.99732 * 3 2 1 5 5 H 1.48495 * 109.47296 * 29.99519 * 3 2 1 6 6 H 1.48493 * 109.47285 * 150.00006 * 3 2 1 7 7 C 1.38816 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00178 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99760 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99880 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.50049 * 324.99678 * 10 9 7 12 12 C 1.53044 * 109.52376 * 204.91709 * 10 9 7 13 13 C 1.53043 * 109.53550 * 178.66648 * 12 10 9 14 14 C 1.53187 * 109.31548 * 61.36786 * 13 12 10 15 15 N 1.46927 * 108.77335 * 305.36235 * 14 13 12 16 16 C 1.34774 * 120.63191 * 233.58267 * 15 14 13 17 17 O 1.21715 * 120.00211 * 174.52417 * 16 15 14 18 18 C 1.46571 * 119.99925 * 354.52911 * 16 15 14 19 19 C 1.40557 * 126.57907 * 320.04150 * 18 16 15 20 20 N 1.30737 * 108.74349 * 179.87752 * 19 18 16 21 21 N 1.40024 * 109.60607 * 0.39016 * 20 19 18 22 22 C 1.36237 * 132.01670 * 179.73144 * 21 20 19 23 23 C 1.35186 * 120.71013 * 180.02562 * 22 21 20 24 24 C 1.40161 * 120.31501 * 0.02562 * 23 22 21 25 25 C 1.36446 * 119.40968 * 359.97438 * 24 23 22 26 26 C 1.36572 * 107.90220 * 359.75065 * 21 20 19 27 27 C 1.46929 * 118.73914 * 53.60937 * 15 14 13 28 28 H 0.97003 * 119.99571 * 0.02562 * 1 2 3 29 29 H 0.96995 * 119.99779 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.46149 * 298.68576 * 12 10 9 31 31 H 1.08999 * 109.46012 * 58.64806 * 12 10 9 32 32 H 1.08992 * 109.50137 * 301.40947 * 13 12 10 33 33 H 1.09006 * 109.51889 * 181.33174 * 13 12 10 34 34 H 1.08999 * 109.59159 * 185.57378 * 14 13 12 35 35 H 1.09008 * 109.58832 * 65.14669 * 14 13 12 36 36 H 1.07996 * 125.62775 * 0.02562 * 19 18 16 37 37 H 1.08003 * 119.64224 * 359.97438 * 22 21 20 38 38 H 1.07995 * 119.83809 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.28981 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.36964 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.58516 * 186.60670 * 27 15 14 42 42 H 1.09004 * 109.70496 * 66.24917 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 1 2.9687 -3.5511 -0.5889 12 6 1.1806 -4.7538 -0.6072 13 6 1.9575 -6.0720 -0.6378 14 6 2.3196 -6.4801 0.7936 15 7 3.0390 -5.3706 1.4340 16 6 4.2425 -5.5718 2.0063 17 8 4.8733 -4.6278 2.4450 18 6 4.7918 -6.9274 2.1002 19 6 4.0802 -8.1002 2.4062 20 7 4.9099 -9.1104 2.3938 21 7 6.1992 -8.6558 2.0907 22 6 7.3896 -9.3064 1.9658 23 6 8.5184 -8.6281 1.6603 24 6 8.4795 -7.2403 1.4676 25 6 7.2919 -6.5798 1.5905 26 6 6.1353 -7.3040 1.9071 27 6 2.4211 -4.0375 1.4392 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 0.2816 -4.8761 -0.0032 31 1 0.9004 -4.4738 -1.6226 32 1 2.8691 -5.9436 -1.2212 33 1 1.3410 -6.8476 -1.0923 34 1 2.9567 -7.3643 0.7715 35 1 1.4095 -6.6969 1.3531 36 1 3.0220 -8.1578 2.6145 37 1 7.4322 -10.3755 2.1133 38 1 9.4544 -9.1580 1.5643 39 1 9.3816 -6.6987 1.2239 40 1 7.2443 -5.5106 1.4457 41 1 3.1253 -3.3100 1.8430 42 1 1.5197 -4.0526 2.0520 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000476713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:01:08 Heat of formation + Delta-G solvation = 90.280509 kcal Electronic energy + Delta-G solvation = -25824.814804 eV Core-core repulsion = 22193.299738 eV Total energy + Delta-G solvation = -3631.515066 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.39608 -39.62195 -37.52729 -37.06621 -34.41271 -33.20949 -32.20392 -31.15438 -31.07158 -29.33682 -27.95148 -25.33600 -24.24550 -23.95616 -23.03418 -22.35607 -21.73246 -20.18119 -18.97921 -17.76863 -17.07975 -16.95981 -16.55363 -16.17918 -15.86178 -15.40197 -14.95713 -14.92253 -14.37773 -14.19061 -13.87577 -13.51515 -13.43349 -13.20987 -12.69370 -12.52385 -12.34954 -12.28663 -12.24910 -12.05642 -11.29844 -11.11702 -11.01285 -10.80866 -10.74399 -10.58401 -10.49031 -10.16509 -9.77323 -9.72718 -9.69880 -9.50534 -9.02520 -8.27565 -7.84444 -6.95619 -5.75269 -3.04671 0.37982 0.72665 1.87477 2.09482 2.92568 3.20010 3.47180 3.52462 3.53454 3.55667 3.93922 4.27309 4.38599 4.53067 4.61865 4.76902 4.92984 5.01773 5.07814 5.12342 5.18440 5.30674 5.36892 5.53207 5.60012 5.67801 5.72731 5.85005 5.88137 5.98278 6.03126 6.10177 6.13810 6.23314 6.28025 6.41343 6.50724 6.56649 6.83891 6.89617 7.08952 7.19291 7.75662 7.78812 8.42898 8.54817 9.54920 10.09469 10.44826 11.47136 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019610 B = 0.003282 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.521013 B = 8528.560957 C = 9473.504212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.240 4.240 8 H 0.072 0.928 9 N -0.719 5.719 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.129 4.129 14 C 0.103 3.897 15 N -0.601 5.601 16 C 0.593 3.407 17 O -0.545 6.545 18 C -0.296 4.296 19 C 0.115 3.885 20 N -0.321 5.321 21 N -0.268 5.268 22 C 0.107 3.893 23 C -0.160 4.160 24 C -0.079 4.079 25 C -0.103 4.103 26 C 0.153 3.847 27 C 0.094 3.906 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.061 0.939 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.200 0.800 37 H 0.171 0.829 38 H 0.157 0.843 39 H 0.145 0.855 40 H 0.156 0.844 41 H 0.091 0.909 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.195 -22.702 1.833 26.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.217 1.217 5 H -0.218 1.218 6 H -0.206 1.206 7 C -0.372 4.372 8 H 0.090 0.910 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.164 4.164 13 C -0.168 4.168 14 C -0.020 4.020 15 N -0.334 5.334 16 C 0.381 3.619 17 O -0.424 6.424 18 C -0.311 4.311 19 C -0.064 4.064 20 N -0.143 5.143 21 N -0.032 5.032 22 C -0.019 4.019 23 C -0.181 4.181 24 C -0.103 4.103 25 C -0.123 4.123 26 C 0.033 3.967 27 C -0.030 4.030 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.216 0.784 37 H 0.188 0.812 38 H 0.174 0.826 39 H 0.163 0.837 40 H 0.173 0.827 41 H 0.109 0.891 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.587 -23.338 2.255 27.099 hybrid contribution -0.066 1.680 -0.051 1.682 sum 13.521 -21.658 2.204 25.627 Atomic orbital electron populations 1.69661 1.05117 1.25700 1.57655 1.24738 0.95507 0.97716 1.02788 0.86194 0.78840 0.83756 0.77497 1.21729 1.21772 1.20582 1.19284 0.91118 0.83990 1.42764 0.91029 1.42376 1.05789 0.99606 1.88150 1.20487 0.94853 0.86368 0.92531 0.93178 1.21823 0.98678 0.94149 1.01750 1.21870 1.00791 0.98137 0.95974 1.21897 0.96657 0.89630 0.93833 1.48066 1.18790 1.10985 1.55523 1.16962 0.80720 0.86508 0.77700 1.90797 1.59164 1.43262 1.49132 1.19816 0.91473 0.95501 1.24345 1.24107 0.99797 0.88722 0.93773 1.77566 0.85326 1.21879 1.29494 1.46022 1.07451 1.06179 1.43589 1.21546 0.81331 0.99391 0.99611 1.20920 0.97797 0.95064 1.04345 1.21307 0.98370 0.94055 0.96524 1.20822 0.89604 1.01724 1.00122 1.19290 0.95069 0.84001 0.98367 1.22754 0.97726 0.81550 1.00957 0.93510 0.78098 0.92023 0.91505 0.91733 0.91121 0.90028 0.91478 0.78394 0.81222 0.82555 0.83699 0.82660 0.89073 0.92049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.24 13.06 55.49 0.72 -27.51 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.82 29.55 -169.99 -5.02 17.79 16 4 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.24 -6.77 9.93 -15.06 -0.15 -6.92 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.72 -18.02 5.13 -53.31 -0.27 -18.29 16 10 C 0.17 3.40 2.92 -67.81 -0.20 3.21 16 11 H 0.05 1.09 8.08 -51.93 -0.42 0.67 16 12 C -0.13 -2.01 5.36 -26.69 -0.14 -2.15 16 13 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 14 C 0.10 1.26 5.45 -3.71 -0.02 1.24 16 15 N -0.60 -9.66 2.97 -174.34 -0.52 -10.18 16 16 C 0.59 10.24 7.55 -12.90 -0.10 10.14 16 17 O -0.55 -11.46 16.51 5.17 0.09 -11.37 16 18 C -0.30 -4.25 5.25 -104.67 -0.55 -4.80 16 19 C 0.12 1.37 9.55 -17.14 -0.16 1.20 16 20 N -0.32 -3.95 12.57 30.75 0.39 -3.56 16 21 N -0.27 -3.08 3.86 -10.55 -0.04 -3.13 16 22 C 0.11 0.82 11.17 -16.68 -0.19 0.63 16 23 C -0.16 -0.94 9.98 -39.95 -0.40 -1.34 16 24 C -0.08 -0.59 10.09 -39.51 -0.40 -0.99 16 25 C -0.10 -1.15 10.07 -39.53 -0.40 -1.55 16 26 C 0.15 2.01 6.77 -84.07 -0.57 1.44 16 27 C 0.09 1.83 6.03 -3.71 -0.02 1.80 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.39 10.13 7.80 -40.82 -0.32 9.81 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 31 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.88 4.76 -51.93 -0.25 0.63 16 35 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 36 H 0.20 1.75 7.30 -52.49 -0.38 1.37 16 37 H 0.17 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.16 0.35 8.06 -52.49 -0.42 -0.07 16 39 H 0.15 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.16 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.09 2.06 6.99 -51.93 -0.36 1.70 16 42 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 348.82 15.07 5.26 5.26 Total: -1.00 -35.31 348.82 -8.46 -43.77 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -5.51 Total: 7.52 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -3.55 Total: -0.30 kcal Atomic # 7 Polarization: -62.95 SS G_CDS: 0.28 Total: -62.67 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.31 -8.46 -43.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000476713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.049 kcal (2) G-P(sol) polarization free energy of solvation -35.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds