Wall clock time and date at job start Fri Apr 10 2020 23:01:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00366 * 2 1 4 4 H 1.48498 * 109.46752 * 269.99732 * 3 2 1 5 5 H 1.48495 * 109.47296 * 29.99519 * 3 2 1 6 6 H 1.48493 * 109.47285 * 150.00006 * 3 2 1 7 7 C 1.38816 * 119.99910 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00178 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99760 * 0.02562 * 7 2 1 10 10 C 1.46494 * 119.99880 * 179.97438 * 9 7 2 11 11 H 1.09005 * 109.50049 * 324.99678 * 10 9 7 12 12 C 1.53044 * 109.52376 * 204.91709 * 10 9 7 13 13 C 1.53043 * 109.53550 * 178.66648 * 12 10 9 14 14 C 1.53187 * 109.31548 * 61.36786 * 13 12 10 15 15 N 1.46927 * 108.77335 * 305.36235 * 14 13 12 16 16 C 1.34774 * 120.63191 * 233.58267 * 15 14 13 17 17 O 1.21715 * 120.00211 * 174.52417 * 16 15 14 18 18 C 1.46571 * 119.99925 * 354.52911 * 16 15 14 19 19 C 1.40557 * 126.57907 * 320.04150 * 18 16 15 20 20 N 1.30737 * 108.74349 * 179.87752 * 19 18 16 21 21 N 1.40024 * 109.60607 * 0.39016 * 20 19 18 22 22 C 1.36237 * 132.01670 * 179.73144 * 21 20 19 23 23 C 1.35186 * 120.71013 * 180.02562 * 22 21 20 24 24 C 1.40161 * 120.31501 * 0.02562 * 23 22 21 25 25 C 1.36446 * 119.40968 * 359.97438 * 24 23 22 26 26 C 1.36572 * 107.90220 * 359.75065 * 21 20 19 27 27 C 1.46929 * 118.73914 * 53.60937 * 15 14 13 28 28 H 0.97003 * 119.99571 * 0.02562 * 1 2 3 29 29 H 0.96995 * 119.99779 * 359.97438 * 9 7 2 30 30 H 1.08997 * 109.46149 * 298.68576 * 12 10 9 31 31 H 1.08999 * 109.46012 * 58.64806 * 12 10 9 32 32 H 1.08992 * 109.50137 * 301.40947 * 13 12 10 33 33 H 1.09006 * 109.51889 * 181.33174 * 13 12 10 34 34 H 1.08999 * 109.59159 * 185.57378 * 14 13 12 35 35 H 1.09008 * 109.58832 * 65.14669 * 14 13 12 36 36 H 1.07996 * 125.62775 * 0.02562 * 19 18 16 37 37 H 1.08003 * 119.64224 * 359.97438 * 22 21 20 38 38 H 1.07995 * 119.83809 * 180.02562 * 23 22 21 39 39 H 1.08001 * 120.28981 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.36964 * 179.97438 * 25 24 23 41 41 H 1.09000 * 109.58516 * 186.60670 * 27 15 14 42 42 H 1.09004 * 109.70496 * 66.24917 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0462 -1.4001 5 1 1.4478 2.6527 0.6999 6 1 3.5477 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3254 -2.3881 0.0005 10 6 2.0578 -3.6568 0.0005 11 1 2.9687 -3.5511 -0.5889 12 6 1.1806 -4.7538 -0.6072 13 6 1.9575 -6.0720 -0.6378 14 6 2.3196 -6.4801 0.7936 15 7 3.0390 -5.3706 1.4340 16 6 4.2425 -5.5718 2.0063 17 8 4.8733 -4.6278 2.4450 18 6 4.7918 -6.9274 2.1002 19 6 4.0802 -8.1002 2.4062 20 7 4.9099 -9.1104 2.3938 21 7 6.1992 -8.6558 2.0907 22 6 7.3896 -9.3064 1.9658 23 6 8.5184 -8.6281 1.6603 24 6 8.4795 -7.2403 1.4676 25 6 7.2919 -6.5798 1.5905 26 6 6.1353 -7.3040 1.9071 27 6 2.4211 -4.0375 1.4392 28 1 -0.4850 0.8401 -0.0004 29 1 0.3555 -2.3880 0.0005 30 1 0.2816 -4.8761 -0.0032 31 1 0.9004 -4.4738 -1.6226 32 1 2.8691 -5.9436 -1.2212 33 1 1.3410 -6.8476 -1.0923 34 1 2.9567 -7.3643 0.7715 35 1 1.4095 -6.6969 1.3531 36 1 3.0220 -8.1578 2.6145 37 1 7.4322 -10.3755 2.1133 38 1 9.4544 -9.1580 1.5643 39 1 9.3816 -6.6987 1.2239 40 1 7.2443 -5.5106 1.4457 41 1 3.1253 -3.3100 1.8430 42 1 1.5197 -4.0526 2.0520 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001000476713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:01:07 Heat of formation + Delta-G solvation = 66.085009 kcal Electronic energy + Delta-G solvation = -25825.864000 eV Core-core repulsion = 22193.299738 eV Total energy + Delta-G solvation = -3632.564262 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.22718 -40.92343 -38.58950 -38.22452 -36.17939 -34.17567 -33.71140 -32.73001 -31.86350 -30.59919 -29.36489 -26.60043 -25.90319 -24.88963 -24.05627 -23.41964 -23.01655 -21.57399 -20.20174 -19.13889 -18.76226 -17.76885 -17.47125 -17.13761 -16.94366 -16.56564 -16.40582 -15.99205 -15.68966 -15.56036 -15.37184 -15.09752 -14.84888 -14.23300 -14.02848 -13.86585 -13.67529 -13.17886 -13.14066 -12.98234 -12.90261 -12.83992 -12.49785 -12.21916 -12.01580 -12.00618 -11.88917 -11.67500 -11.53828 -11.33936 -11.10471 -10.86292 -10.46270 -9.73150 -9.01512 -8.70040 -7.98392 -5.27469 -0.34849 -0.01377 1.10226 1.13958 1.44193 1.45799 1.54951 1.90569 2.16070 2.45364 2.54143 3.14418 3.34617 3.51978 3.75483 3.80453 3.86355 3.89790 4.02465 4.09888 4.12363 4.25441 4.27880 4.37059 4.41971 4.49892 4.61313 4.68408 4.77055 4.89094 4.92159 5.02236 5.06293 5.12630 5.21096 5.24310 5.38412 5.40156 5.44163 5.47467 5.63119 5.76526 6.24536 6.35637 6.52039 7.23804 7.31089 8.03088 8.29315 9.24330 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.019610 B = 0.003282 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.521013 B = 8528.560957 C = 9473.504212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.067 4.067 3 Si 0.968 3.032 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.064 0.936 9 N -0.729 5.729 10 C 0.168 3.832 11 H 0.027 0.973 12 C -0.116 4.116 13 C -0.120 4.120 14 C 0.100 3.900 15 N -0.599 5.599 16 C 0.591 3.409 17 O -0.600 6.600 18 C -0.340 4.340 19 C 0.128 3.872 20 N -0.336 5.336 21 N -0.270 5.270 22 C 0.099 3.901 23 C -0.143 4.143 24 C -0.048 4.048 25 C -0.151 4.151 26 C 0.143 3.857 27 C 0.110 3.890 28 H 0.253 0.747 29 H 0.378 0.622 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.111 0.889 34 H 0.103 0.897 35 H 0.094 0.906 36 H 0.224 0.776 37 H 0.206 0.794 38 H 0.207 0.793 39 H 0.178 0.822 40 H 0.131 0.869 41 H 0.047 0.953 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.053 -26.200 1.423 30.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.260 4.260 3 Si 0.797 3.203 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.203 1.203 7 C -0.377 4.377 8 H 0.082 0.918 9 N -0.369 5.369 10 C 0.059 3.941 11 H 0.045 0.955 12 C -0.155 4.155 13 C -0.159 4.159 14 C -0.021 4.021 15 N -0.331 5.331 16 C 0.382 3.618 17 O -0.482 6.482 18 C -0.355 4.355 19 C -0.051 4.051 20 N -0.157 5.157 21 N -0.034 5.034 22 C -0.027 4.027 23 C -0.164 4.164 24 C -0.071 4.071 25 C -0.171 4.171 26 C 0.022 3.978 27 C -0.016 4.016 28 H 0.062 0.938 29 H 0.211 0.789 30 H 0.090 0.910 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.121 0.879 35 H 0.112 0.888 36 H 0.241 0.759 37 H 0.222 0.778 38 H 0.224 0.776 39 H 0.195 0.805 40 H 0.149 0.851 41 H 0.066 0.934 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 15.455 -26.916 1.828 31.091 hybrid contribution -0.384 2.615 0.062 2.644 sum 15.071 -24.301 1.890 28.657 Atomic orbital electron populations 1.69790 1.06303 1.26175 1.59116 1.25480 0.96406 1.00767 1.03372 0.85222 0.77623 0.79832 0.77612 1.20971 1.21652 1.20273 1.19514 0.91007 0.85514 1.41678 0.91831 1.42491 1.05518 1.00539 1.88330 1.20627 0.94494 0.86111 0.92915 0.95467 1.21725 0.98508 0.94230 1.00995 1.21855 1.00509 0.97068 0.96428 1.22219 0.97681 0.88718 0.93485 1.48059 1.18872 1.10526 1.55632 1.17454 0.80339 0.87404 0.76637 1.90748 1.60628 1.45313 1.51542 1.19518 0.92820 0.94351 1.28778 1.24406 1.00806 0.87465 0.92452 1.77498 0.85790 1.21984 1.30448 1.46278 1.08299 1.05638 1.43163 1.22484 0.80366 1.01255 0.98562 1.21550 0.99106 0.94145 1.01602 1.21823 0.97804 0.95159 0.92290 1.20807 0.91028 1.01082 1.04160 1.19467 0.95147 0.85127 0.98032 1.22200 0.96641 0.82889 0.99821 0.93804 0.78930 0.91026 0.92036 0.92674 0.87110 0.87947 0.88822 0.75937 0.77759 0.77608 0.80495 0.85097 0.93393 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.77 13.06 21.65 0.28 -59.49 16 2 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 3 Si 0.97 48.15 29.55 68.60 2.03 50.17 16 4 H -0.28 -13.65 7.11 99.48 0.71 -12.95 16 5 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 6 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 7 C -0.25 -14.38 9.93 84.03 0.83 -13.55 16 8 H 0.06 3.75 7.83 -2.91 -0.02 3.72 16 9 N -0.73 -38.13 5.13 -322.57 -1.65 -39.78 16 10 C 0.17 7.10 2.92 45.07 0.13 7.23 16 11 H 0.03 1.26 8.08 -2.38 -0.02 1.24 16 12 C -0.12 -3.67 5.36 30.62 0.16 -3.51 16 13 C -0.12 -2.80 6.08 30.67 0.19 -2.61 16 14 C 0.10 2.28 5.45 86.36 0.47 2.75 16 15 N -0.60 -19.91 2.97 -823.71 -2.45 -22.36 16 16 C 0.59 21.66 7.55 86.42 0.65 22.31 16 17 O -0.60 -27.57 16.51 -4.40 -0.07 -27.64 16 18 C -0.34 -9.94 5.25 -19.90 -0.10 -10.05 16 19 C 0.13 2.90 9.55 85.42 0.82 3.71 16 20 N -0.34 -7.66 12.57 -56.62 -0.71 -8.37 16 21 N -0.27 -5.70 3.86 -187.28 -0.72 -6.43 16 22 C 0.10 1.12 11.17 83.31 0.93 2.05 16 23 C -0.14 -0.99 9.98 22.03 0.22 -0.77 16 24 C -0.05 -0.57 10.09 22.32 0.23 -0.35 16 25 C -0.15 -3.42 10.07 22.30 0.22 -3.19 16 26 C 0.14 3.78 6.77 39.50 0.27 4.05 16 27 C 0.11 4.51 6.03 86.36 0.52 5.03 16 28 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 29 H 0.38 20.61 7.80 -92.71 -0.72 19.88 16 30 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.11 1.81 8.14 -2.38 -0.02 1.79 16 34 H 0.10 1.99 4.76 -2.39 -0.01 1.98 16 35 H 0.09 1.69 8.14 -2.38 -0.02 1.68 16 36 H 0.22 3.48 7.30 -2.91 -0.02 3.46 16 37 H 0.21 0.81 8.06 -2.91 -0.02 0.79 16 38 H 0.21 -0.54 8.06 -2.91 -0.02 -0.57 16 39 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 40 H 0.13 3.52 8.06 -2.91 -0.02 3.49 16 41 H 0.05 2.36 6.99 -2.39 -0.02 2.35 16 42 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 Total: -1.00 -83.55 348.82 3.03 -80.52 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: 0.33 Total: 23.79 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: 6.01 Total: 9.57 kcal Atomic # 7 Polarization: -131.17 SS G_CDS: -5.25 Total: -136.42 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -0.07 Total: -27.64 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 2.03 Total: 50.17 kcal Total: -83.55 3.03 -80.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000476713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.607 kcal (2) G-P(sol) polarization free energy of solvation -83.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds