Wall clock time and date at job start Fri Apr 10 2020 23:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86796 * 119.99667 * 2 1 4 4 H 1.48499 * 109.47371 * 270.27703 * 3 2 1 5 5 H 1.48499 * 109.47139 * 30.27627 * 3 2 1 6 6 H 1.48504 * 109.47207 * 150.27459 * 3 2 1 7 7 C 1.38805 * 120.00164 * 180.27585 * 2 1 3 8 8 H 1.07998 * 120.00261 * 179.72297 * 7 2 1 9 9 N 1.36943 * 120.00234 * 359.72632 * 7 2 1 10 10 C 1.46501 * 120.00296 * 179.97438 * 9 7 2 11 11 H 1.09006 * 109.49207 * 34.93414 * 10 9 7 12 12 C 1.53038 * 109.49720 * 154.99644 * 10 9 7 13 13 C 1.53044 * 109.53487 * 181.31568 * 12 10 9 14 14 C 1.53187 * 109.31616 * 298.63655 * 13 12 10 15 15 N 1.46930 * 108.77130 * 54.63395 * 14 13 12 16 16 C 1.34782 * 120.62837 * 126.41823 * 15 14 13 17 17 O 1.21712 * 120.00262 * 175.72333 * 16 15 14 18 18 C 1.46573 * 119.99636 * 355.71867 * 16 15 14 19 19 C 1.40546 * 126.58159 * 49.82442 * 18 16 15 20 20 N 1.30744 * 108.74482 * 179.85360 * 19 18 16 21 21 N 1.40010 * 109.60365 * 0.41241 * 20 19 18 22 22 C 1.36244 * 132.01665 * 179.68597 * 21 20 19 23 23 C 1.35184 * 120.70839 * 180.02562 * 22 21 20 24 24 C 1.40160 * 120.32021 * 0.04578 * 23 22 21 25 25 C 1.36441 * 119.40875 * 359.97438 * 24 23 22 26 26 C 1.36578 * 107.90630 * 359.73973 * 21 20 19 27 27 C 1.46918 * 118.74330 * 306.38972 * 15 14 13 28 28 H 0.96991 * 120.00439 * 359.72045 * 1 2 3 29 29 H 0.97004 * 119.99666 * 359.97438 * 9 7 2 30 30 H 1.09004 * 109.46280 * 301.33858 * 12 10 9 31 31 H 1.08994 * 109.45828 * 61.31385 * 12 10 9 32 32 H 1.09003 * 109.49400 * 58.59313 * 13 12 10 33 33 H 1.09006 * 109.49338 * 178.68245 * 13 12 10 34 34 H 1.09000 * 109.59144 * 174.42200 * 14 13 12 35 35 H 1.09004 * 109.58713 * 294.84962 * 14 13 12 36 36 H 1.08007 * 125.63153 * 0.02562 * 19 18 16 37 37 H 1.07997 * 119.64268 * 0.02562 * 22 21 20 38 38 H 1.08000 * 119.83647 * 180.02562 * 23 22 21 39 39 H 1.07998 * 120.29548 * 179.97438 * 24 23 22 40 40 H 1.07997 * 120.37737 * 179.97438 * 25 24 23 41 41 H 1.09004 * 109.59041 * 293.82382 * 27 15 14 42 42 H 1.09001 * 109.59143 * 173.39638 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4918 2.0499 -1.4000 5 1 1.4505 2.6509 0.7059 6 1 3.5506 1.4386 0.6942 7 6 2.0103 -1.2021 -0.0058 8 1 3.0903 -1.2021 -0.0103 9 7 1.3257 -2.3881 -0.0058 10 6 2.0582 -3.6568 -0.0125 11 1 2.9723 -3.5521 0.5721 12 6 1.1841 -4.7545 0.5983 13 6 1.9606 -6.0731 0.6218 14 6 2.3141 -6.4786 -0.8125 15 7 3.0301 -5.3681 -1.4550 16 6 4.2302 -5.5688 -2.0347 17 8 4.7776 -4.6599 -2.6311 18 6 4.8761 -6.8816 -1.9469 19 6 4.2893 -8.1249 -2.2387 20 7 5.1778 -9.0644 -2.0458 21 7 6.3799 -8.4923 -1.6123 22 6 7.5819 -9.0396 -1.2778 23 6 8.6101 -8.2570 -0.8805 24 6 8.4531 -6.8662 -0.8060 25 6 7.2530 -6.3087 -1.1385 26 6 6.2021 -7.1397 -1.5481 27 6 2.4129 -4.0348 -1.4540 28 1 -0.4850 0.8399 0.0041 29 1 0.3557 -2.3881 -0.0014 30 1 0.9100 -4.4763 1.6160 31 1 0.2816 -4.8754 -0.0007 32 1 2.8758 -5.9461 1.2001 33 1 1.3459 -6.8491 1.0783 34 1 2.9509 -7.3631 -0.7959 35 1 1.4006 -6.6939 -1.3670 36 1 3.2730 -8.2787 -2.5705 37 1 7.7147 -10.1101 -1.3306 38 1 9.5570 -8.7057 -0.6190 39 1 9.2747 -6.2415 -0.4881 40 1 7.1146 -5.2389 -1.0864 41 1 1.5075 -4.0508 -2.0609 42 1 3.1149 -3.3068 -1.8606 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001000476714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 23:01:11 Heat of formation + Delta-G solvation = 90.420227 kcal Electronic energy + Delta-G solvation = -25882.359960 eV Core-core repulsion = 22250.850952 eV Total energy + Delta-G solvation = -3631.509008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.38508 -39.62624 -37.52418 -37.07481 -34.41536 -33.21094 -32.19447 -31.16439 -31.07040 -29.33713 -27.96154 -25.33200 -24.22944 -23.96902 -23.05337 -22.35143 -21.74350 -20.17910 -18.96384 -17.76379 -17.08042 -16.97522 -16.60056 -16.19390 -15.83391 -15.39978 -14.97724 -14.92698 -14.36701 -14.19902 -13.91727 -13.53526 -13.39433 -13.25335 -12.67592 -12.52009 -12.36091 -12.29000 -12.21583 -12.04328 -11.30766 -11.11059 -11.02561 -10.81645 -10.73848 -10.58217 -10.51956 -10.17904 -9.78933 -9.73409 -9.69725 -9.52014 -9.03434 -8.27828 -7.83243 -6.96809 -5.76260 -3.05849 0.39547 0.74144 1.88668 2.14141 2.90730 3.13853 3.46553 3.49633 3.52240 3.53700 3.94942 4.27641 4.39752 4.54216 4.60824 4.77508 4.92513 5.01786 5.08259 5.13136 5.18051 5.32205 5.37258 5.52181 5.60376 5.68286 5.72575 5.84411 5.88778 5.97257 6.03229 6.10292 6.13460 6.22465 6.27055 6.40812 6.51706 6.55235 6.82406 6.87878 7.07561 7.20345 7.73971 7.77408 8.41761 8.53016 9.53792 10.08256 10.43590 11.46118 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018525 B = 0.003385 C = 0.003052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.145227 B = 8270.492012 C = 9173.436987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.907 3.093 4 H -0.289 1.289 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.241 4.241 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.126 4.126 13 C -0.129 4.129 14 C 0.103 3.897 15 N -0.599 5.599 16 C 0.593 3.407 17 O -0.543 6.543 18 C -0.293 4.293 19 C 0.113 3.887 20 N -0.320 5.320 21 N -0.268 5.268 22 C 0.108 3.892 23 C -0.160 4.160 24 C -0.079 4.079 25 C -0.104 4.104 26 C 0.150 3.850 27 C 0.094 3.906 28 H 0.255 0.745 29 H 0.385 0.615 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.199 0.801 37 H 0.170 0.830 38 H 0.157 0.843 39 H 0.145 0.855 40 H 0.154 0.846 41 H 0.061 0.939 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.358 -21.938 -0.179 25.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.207 4.207 3 Si 0.738 3.262 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.164 4.164 13 C -0.168 4.168 14 C -0.020 4.020 15 N -0.332 5.332 16 C 0.380 3.620 17 O -0.421 6.421 18 C -0.308 4.308 19 C -0.066 4.066 20 N -0.142 5.142 21 N -0.032 5.032 22 C -0.018 4.018 23 C -0.181 4.181 24 C -0.102 4.102 25 C -0.124 4.124 26 C 0.030 3.970 27 C -0.030 4.030 28 H 0.065 0.935 29 H 0.219 0.781 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.216 0.784 37 H 0.188 0.812 38 H 0.174 0.826 39 H 0.163 0.837 40 H 0.171 0.829 41 H 0.080 0.920 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 13.823 -22.599 -0.575 26.498 hybrid contribution -0.118 1.684 -0.029 1.688 sum 13.705 -20.915 -0.605 25.013 Atomic orbital electron populations 1.69660 1.05113 1.25730 1.57584 1.24738 0.95508 0.97722 1.02744 0.86190 0.78679 0.83742 0.77618 1.21600 1.21807 1.20700 1.19272 0.91095 0.83994 1.42863 0.91059 1.42381 1.05809 0.99591 1.88113 1.20491 0.94899 0.86405 0.92450 0.93204 1.21823 0.98703 0.94135 1.01742 1.21868 1.00776 0.98124 0.95990 1.21876 0.96730 0.89637 0.93792 1.48119 1.19004 1.10923 1.55165 1.16991 0.80554 0.85906 0.78505 1.90804 1.64297 1.44401 1.42599 1.19787 0.93466 0.95029 1.22537 1.24038 0.98971 0.88987 0.94587 1.77552 0.89443 1.20461 1.26748 1.45995 1.09747 1.05697 1.41795 1.21540 0.81503 1.00504 0.98294 1.20913 0.99075 0.94003 1.04147 1.21291 0.97455 0.94850 0.96611 1.20780 0.90976 1.01074 0.99565 1.19251 0.94844 0.84116 0.98776 1.22773 0.97832 0.81473 1.00905 0.93488 0.78074 0.91496 0.92011 0.91770 0.91156 0.90023 0.91402 0.78444 0.81234 0.82559 0.83703 0.82860 0.92043 0.89122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.15 13.06 55.49 0.72 -27.42 16 2 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 4 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.24 -6.76 9.93 -15.06 -0.15 -6.90 16 8 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 9 N -0.72 -17.94 5.12 -53.31 -0.27 -18.22 16 10 C 0.17 3.38 2.92 -67.81 -0.20 3.19 16 11 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 12 C -0.13 -2.00 5.35 -26.69 -0.14 -2.15 16 13 C -0.13 -1.62 6.08 -26.61 -0.16 -1.78 16 14 C 0.10 1.26 5.88 -3.71 -0.02 1.24 16 15 N -0.60 -9.65 2.97 -174.35 -0.52 -10.17 16 16 C 0.59 10.23 7.54 -12.90 -0.10 10.14 16 17 O -0.54 -11.46 16.54 5.18 0.09 -11.38 16 18 C -0.29 -4.21 5.17 -104.68 -0.54 -4.75 16 19 C 0.11 1.34 9.57 -17.15 -0.16 1.18 16 20 N -0.32 -3.95 12.57 30.75 0.39 -3.56 16 21 N -0.27 -3.10 3.86 -10.54 -0.04 -3.14 16 22 C 0.11 0.83 11.17 -16.68 -0.19 0.64 16 23 C -0.16 -0.96 9.98 -39.95 -0.40 -1.36 16 24 C -0.08 -0.60 10.09 -39.51 -0.40 -1.00 16 25 C -0.10 -1.18 10.07 -39.53 -0.40 -1.57 16 26 C 0.15 1.98 6.79 -84.07 -0.57 1.41 16 27 C 0.09 1.83 6.01 -3.72 -0.02 1.80 16 28 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 29 H 0.39 10.11 7.80 -40.82 -0.32 9.79 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.88 4.55 -51.93 -0.24 0.64 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.20 1.73 7.60 -52.48 -0.40 1.33 16 37 H 0.17 0.79 8.06 -52.49 -0.42 0.36 16 38 H 0.16 0.37 8.06 -52.49 -0.42 -0.05 16 39 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.15 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.09 2.04 7.03 -51.93 -0.36 1.68 16 LS Contribution 349.33 15.07 5.26 5.26 Total: -1.00 -35.24 349.33 -8.45 -43.70 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.51 Total: 7.54 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -3.55 Total: -0.33 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: 0.28 Total: -62.51 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: 0.09 Total: -11.38 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -35.24 -8.45 -43.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001000476714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.118 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds