Wall clock time and date at job start Fri Apr 10 2020 22:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86797 * 120.00135 * 2 1 4 4 H 1.48498 * 109.47186 * 265.16932 * 3 2 1 5 5 H 1.48502 * 109.47076 * 25.17502 * 3 2 1 6 6 H 1.48505 * 109.47043 * 145.16953 * 3 2 1 7 7 C 1.38817 * 119.99719 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99830 * 342.99452 * 7 2 1 9 9 N 1.36928 * 119.99857 * 162.98075 * 7 2 1 10 10 C 1.47426 * 125.65292 * 331.91380 * 9 7 2 11 11 C 1.54906 * 104.93048 * 204.09392 * 10 9 7 12 12 C 1.55273 * 101.52590 * 323.12204 * 11 10 9 13 13 C 1.47026 * 125.64928 * 151.93078 * 9 7 2 14 14 H 1.08998 * 109.87856 * 59.50848 * 13 9 7 15 15 C 1.53001 * 109.88247 * 298.34115 * 13 9 7 16 16 N 1.46505 * 109.46995 * 56.67770 * 15 13 9 17 17 C 1.34772 * 120.00091 * 185.93896 * 16 15 13 18 18 O 1.21601 * 119.99946 * 0.02562 * 17 16 15 19 19 C 1.47463 * 120.00259 * 180.02562 * 17 16 15 20 20 C 1.39004 * 120.29666 * 359.97438 * 19 17 16 21 21 C 1.38502 * 120.37236 * 179.97438 * 20 19 17 22 22 C 1.37830 * 120.78833 * 0.02562 * 21 20 19 23 23 C 1.39219 * 120.19813 * 359.97438 * 22 21 20 24 24 N 1.37215 * 133.65084 * 179.97438 * 23 22 21 25 25 H 0.96998 * 125.98112 * 359.97438 * 24 23 22 26 26 N 1.40031 * 108.03184 * 179.97438 * 24 23 22 27 27 C 1.30266 * 109.70608 * 0.02562 * 26 24 23 28 28 C 1.40684 * 119.78672 * 359.70281 * 23 22 21 29 29 H 0.97006 * 119.99382 * 0.02562 * 1 2 3 30 30 H 1.09006 * 110.36497 * 322.98639 * 10 9 7 31 31 H 1.09003 * 110.36975 * 85.19194 * 10 9 7 32 32 H 1.09000 * 111.01109 * 81.11805 * 11 10 9 33 33 H 1.09007 * 111.00060 * 204.96924 * 11 10 9 34 34 H 1.09006 * 110.62434 * 277.00882 * 12 11 10 35 35 H 1.08996 * 110.75902 * 153.78342 * 12 11 10 36 36 H 1.08991 * 109.46990 * 176.67711 * 15 13 9 37 37 H 1.09004 * 109.47091 * 296.68158 * 15 13 9 38 38 H 0.97001 * 120.00001 * 5.94161 * 16 15 13 39 39 H 1.08006 * 119.81263 * 0.02562 * 20 19 17 40 40 H 1.07995 * 119.60667 * 180.02562 * 21 20 19 41 41 H 1.07997 * 119.89953 * 179.97438 * 22 21 20 42 42 H 1.07999 * 125.64500 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.5999 1.9874 -1.3951 5 1 1.4005 2.6799 0.5956 6 1 3.4931 1.4717 0.7997 7 6 2.0103 -1.2022 0.0005 8 1 1.5056 -2.1169 0.2745 9 7 3.3346 -1.2284 -0.3465 10 6 4.0027 -0.2823 -1.2587 11 6 5.2345 -1.0509 -1.7987 12 6 5.6699 -1.8584 -0.5459 13 6 4.3258 -2.2048 0.1285 14 1 4.0184 -3.2119 -0.1532 15 6 4.4659 -2.1064 1.6489 16 7 3.1562 -2.3074 2.2740 17 6 3.0125 -2.1456 3.6042 18 8 3.9697 -1.8323 4.2856 19 6 1.6944 -2.3484 4.2335 20 6 0.5959 -2.7061 3.4605 21 6 -0.6427 -2.8976 4.0500 22 6 -0.8097 -2.7373 5.4088 23 6 0.2713 -2.3795 6.2098 24 7 0.4188 -2.1506 7.5546 25 1 -0.2819 -2.2091 8.2229 26 7 1.7578 -1.8177 7.7934 27 6 2.4209 -1.8331 6.6722 28 6 1.5382 -2.1876 5.6290 29 1 -0.4849 0.8401 -0.0004 30 1 3.3365 -0.0102 -2.0775 31 1 4.3192 0.6085 -0.7162 32 1 4.9528 -1.7175 -2.6137 33 1 6.0181 -0.3615 -2.1130 34 1 6.2847 -1.2443 0.1122 35 1 6.2008 -2.7651 -0.8361 36 1 5.1575 -2.8720 2.0003 37 1 4.8484 -1.1211 1.9155 38 1 2.3926 -2.5570 1.7305 39 1 0.7090 -2.8363 2.3943 40 1 -1.4878 -3.1757 3.4378 41 1 -1.7821 -2.8898 5.8534 42 1 3.4728 -1.6156 6.5600 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028065310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:44 Heat of formation + Delta-G solvation = 83.259105 kcal Electronic energy + Delta-G solvation = -26463.596088 eV Core-core repulsion = 22831.776551 eV Total energy + Delta-G solvation = -3631.819537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.33947 -39.20864 -37.89233 -36.64437 -33.93406 -32.74692 -32.37242 -30.15968 -30.05103 -29.66767 -28.72616 -25.19785 -24.23429 -23.10149 -22.31676 -21.40288 -21.11175 -19.97103 -19.61519 -17.97650 -16.95223 -16.68571 -16.03715 -15.69955 -15.25636 -15.12213 -14.87790 -14.76525 -14.32265 -14.23109 -13.44416 -13.43128 -13.14239 -13.02630 -12.72258 -12.57352 -11.79556 -11.65094 -11.60315 -11.54742 -11.30580 -11.17868 -10.98041 -10.81924 -10.69063 -10.55000 -10.15709 -10.11374 -10.01073 -9.55397 -9.33507 -8.79107 -8.53817 -8.33452 -7.86873 -7.06943 -6.09636 -3.47287 0.70150 1.57779 2.66955 2.79675 3.26800 3.29961 3.44197 3.48172 3.76312 4.19340 4.45126 4.75695 4.86330 4.90935 5.01668 5.12902 5.20101 5.24436 5.30157 5.35430 5.42120 5.53180 5.75210 5.84864 5.89984 5.93974 6.02585 6.08795 6.11260 6.22648 6.29997 6.36371 6.43176 6.55823 6.59475 6.61649 6.74120 6.81851 6.89468 7.12134 7.34432 7.64848 7.67071 8.12971 8.23282 8.64787 8.82235 9.54410 10.09409 11.04997 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.015971 B = 0.004678 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1752.747857 B = 5984.326373 C = 6768.390321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.037 3.963 3 Si 0.887 3.113 4 H -0.286 1.286 5 H -0.303 1.303 6 H -0.273 1.273 7 C -0.248 4.248 8 H 0.086 0.914 9 N -0.602 5.602 10 C 0.111 3.889 11 C -0.131 4.131 12 C -0.123 4.123 13 C 0.144 3.856 14 H 0.050 0.950 15 C 0.114 3.886 16 N -0.691 5.691 17 C 0.551 3.449 18 O -0.559 6.559 19 C -0.051 4.051 20 C -0.103 4.103 21 C -0.068 4.068 22 C -0.128 4.128 23 C 0.115 3.885 24 N -0.514 5.514 25 H 0.438 0.562 26 N -0.263 5.263 27 C 0.093 3.907 28 C -0.133 4.133 29 H 0.265 0.735 30 H 0.056 0.944 31 H 0.024 0.976 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.413 0.587 39 H 0.141 0.859 40 H 0.138 0.862 41 H 0.127 0.873 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.097 -6.940 5.543 9.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.164 4.164 3 Si 0.718 3.282 4 H -0.212 1.212 5 H -0.231 1.231 6 H -0.198 1.198 7 C -0.376 4.376 8 H 0.103 0.897 9 N -0.328 5.328 10 C -0.014 4.014 11 C -0.169 4.169 12 C -0.162 4.162 13 C 0.036 3.964 14 H 0.068 0.932 15 C -0.012 4.012 16 N -0.345 5.345 17 C 0.338 3.662 18 O -0.440 6.440 19 C -0.057 4.057 20 C -0.123 4.123 21 C -0.089 4.089 22 C -0.150 4.150 23 C -0.002 4.002 24 N -0.229 5.229 25 H 0.283 0.717 26 N -0.078 5.078 27 C -0.103 4.103 28 C -0.142 4.142 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.042 0.958 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.256 0.744 39 H 0.159 0.841 40 H 0.156 0.844 41 H 0.145 0.855 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 2.592 -6.423 7.293 10.058 hybrid contribution -0.526 0.967 -0.748 1.331 sum 2.067 -5.456 6.545 8.768 Atomic orbital electron populations 1.69761 1.05506 1.26906 1.52103 1.25154 0.95148 0.97603 0.98510 0.86869 0.79369 0.84232 0.77766 1.21247 1.23143 1.19842 1.18284 0.81793 0.93789 1.43697 0.89698 1.44806 1.05468 1.32715 1.49844 1.21964 0.93191 0.92976 0.93266 1.22733 0.97966 0.99011 0.97214 1.22545 0.96406 0.99979 0.97253 1.21354 0.89770 0.94719 0.90517 0.93250 1.21931 0.84203 1.00712 0.94320 1.46130 1.13548 1.67926 1.06893 1.18092 0.87620 0.77822 0.82681 1.90657 1.40814 1.49215 1.63287 1.19543 0.94216 1.00504 0.91421 1.21373 0.91807 0.98651 1.00466 1.20964 0.97555 0.96947 0.93423 1.20167 0.96474 1.05037 0.93322 1.18795 0.95764 1.00280 0.85325 1.46007 1.08576 1.63079 1.05223 0.71731 1.76735 0.88596 1.18499 1.23921 1.24180 1.00989 0.97216 0.87867 1.18662 0.92986 1.08864 0.93657 0.92525 0.92543 0.95814 0.91275 0.91743 0.91370 0.91302 0.92776 0.91900 0.74427 0.84134 0.84428 0.85547 0.78175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.24 13.97 55.49 0.78 -24.46 16 2 C 0.04 0.98 5.46 -17.43 -0.10 0.89 16 3 Si 0.89 22.14 24.36 -169.99 -4.14 18.00 16 4 H -0.29 -6.90 6.85 56.52 0.39 -6.51 16 5 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 6 H -0.27 -6.92 6.64 56.52 0.38 -6.55 16 7 C -0.25 -6.10 8.45 -15.06 -0.13 -6.23 16 8 H 0.09 2.12 6.63 -52.49 -0.35 1.77 16 9 N -0.60 -12.97 2.82 -162.57 -0.46 -13.43 16 10 C 0.11 2.24 4.78 -2.53 -0.01 2.23 16 11 C -0.13 -2.00 7.10 -24.52 -0.17 -2.18 16 12 C -0.12 -1.79 6.48 -24.84 -0.16 -1.95 16 13 C 0.14 2.53 3.42 -66.95 -0.23 2.30 16 14 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 15 C 0.11 2.07 5.27 -4.04 -0.02 2.05 16 16 N -0.69 -13.19 4.77 -61.37 -0.29 -13.48 16 17 C 0.55 10.87 7.76 -12.50 -0.10 10.78 16 18 O -0.56 -11.90 14.93 5.28 0.08 -11.82 16 19 C -0.05 -0.92 5.90 -104.68 -0.62 -1.53 16 20 C -0.10 -1.68 9.52 -39.20 -0.37 -2.05 16 21 C -0.07 -0.93 10.00 -39.63 -0.40 -1.33 16 22 C -0.13 -1.63 10.06 -39.37 -0.40 -2.03 16 23 C 0.11 1.71 7.32 -84.17 -0.62 1.09 16 24 N -0.51 -6.87 7.45 32.35 0.24 -6.62 16 25 H 0.44 4.18 8.96 -182.65 -1.64 2.55 16 26 N -0.26 -4.11 12.58 30.81 0.39 -3.72 16 27 C 0.09 1.55 11.23 -17.10 -0.19 1.36 16 28 C -0.13 -2.30 6.00 -106.68 -0.64 -2.94 16 29 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.06 1.21 7.41 -51.93 -0.38 0.83 16 31 H 0.02 0.52 5.24 -51.93 -0.27 0.25 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.96 7.80 -51.93 -0.40 0.56 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 38 H 0.41 7.90 3.55 -40.82 -0.14 7.76 16 39 H 0.14 2.35 6.29 -52.48 -0.33 2.01 16 40 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 42 H 0.20 3.25 6.95 -52.49 -0.36 2.88 16 LS Contribution 336.24 15.07 5.07 5.07 Total: -1.00 -31.06 336.24 -8.93 -39.99 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -6.44 Total: 10.06 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -4.15 Total: 0.44 kcal Atomic # 7 Polarization: -62.38 SS G_CDS: 0.65 Total: -61.73 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.14 Total: 18.00 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.06 -8.93 -39.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028065310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.247 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds