Wall clock time and date at job start Fri Apr 10 2020 22:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47237 * 2 1 4 4 C 1.53004 * 109.47137 * 239.99626 * 2 1 3 5 5 N 1.46504 * 109.46910 * 119.99948 * 2 1 3 6 6 C 1.34586 * 125.74430 * 74.97746 * 5 2 1 7 7 N 1.30868 * 107.64399 * 179.75094 * 6 5 2 8 8 C 1.34597 * 107.26801 * 0.38831 * 7 6 5 9 9 C 1.47708 * 126.05753 * 179.87287 * 8 7 6 10 10 O 1.21592 * 119.99491 * 185.20442 * 9 8 7 11 11 N 1.34768 * 120.00365 * 5.20319 * 9 8 7 12 12 C 1.36928 * 119.99906 * 356.90365 * 11 9 8 13 13 H 1.07999 * 119.99781 * 48.06606 * 12 11 9 14 14 C 1.38966 * 120.00449 * 227.78809 * 12 11 9 15 15 N 1.31382 * 120.00204 * 195.11139 * 14 12 11 16 16 Si 1.86801 * 120.00036 * 15.10783 * 14 12 11 17 17 H 1.48501 * 109.46949 * 4.79705 * 16 14 12 18 18 H 1.48495 * 109.47305 * 124.79361 * 16 14 12 19 19 H 1.48492 * 109.47221 * 244.79920 * 16 14 12 20 20 C 1.39709 * 120.00409 * 176.90837 * 11 9 8 21 21 C 1.38982 * 120.07654 * 6.76343 * 20 11 9 22 22 C 1.38070 * 119.91812 * 179.76818 * 21 20 11 23 23 C 1.38315 * 120.08039 * 0.48872 * 22 21 20 24 24 C 1.38310 * 120.16149 * 359.76466 * 23 22 21 25 25 C 1.38081 * 120.07684 * 0.02562 * 24 23 22 26 26 N 1.28858 * 125.73832 * 254.97210 * 5 2 1 27 27 H 1.09000 * 109.47419 * 300.00184 * 1 2 3 28 28 H 1.09006 * 109.47257 * 60.00681 * 1 2 3 29 29 H 1.09003 * 109.47428 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46997 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46441 * 299.99819 * 3 2 1 32 32 H 1.09000 * 109.47066 * 59.99600 * 3 2 1 33 33 H 1.08996 * 109.47093 * 299.99658 * 4 2 1 34 34 H 1.08994 * 109.47161 * 60.00419 * 4 2 1 35 35 H 1.09003 * 109.46907 * 179.97438 * 4 2 1 36 36 H 1.07997 * 126.17931 * 359.97438 * 6 5 2 37 37 H 0.97002 * 120.00440 * 359.97438 * 15 14 12 38 38 H 1.08002 * 120.03926 * 359.97438 * 21 20 11 39 39 H 1.08002 * 119.96300 * 180.22967 * 22 21 20 40 40 H 1.07999 * 119.92079 * 179.74483 * 23 22 21 41 41 H 1.07998 * 119.96357 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.03969 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6906 1.1962 6 6 2.0133 -2.0221 1.3924 7 7 2.5322 -2.2512 2.5718 8 6 2.8497 -1.0578 3.1072 9 6 3.4607 -0.8349 4.4334 10 8 3.6153 0.2974 4.8489 11 7 3.8466 -1.8863 5.1830 12 6 3.6149 -3.1622 4.7435 13 1 3.8734 -3.4403 3.7324 14 6 3.0525 -4.1009 5.6000 15 7 3.0997 -5.3784 5.2968 16 14 2.2295 -3.5464 7.1826 17 1 2.2063 -2.0625 7.2349 18 1 0.8386 -4.0649 7.2252 19 1 2.9891 -4.0709 8.3457 20 6 4.4830 -1.6744 6.4086 21 6 4.5937 -0.3880 6.9227 22 6 5.2191 -0.1829 8.1365 23 6 5.7439 -1.2547 8.8357 24 6 5.6402 -2.5357 8.3247 25 6 5.0124 -2.7488 7.1135 26 7 2.5248 -0.1254 2.2376 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2076 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 1.6504 -2.7672 0.7000 37 1 3.5268 -5.6664 4.4749 38 1 4.1882 0.4499 6.3750 39 1 5.3022 0.8160 8.5385 40 1 6.2362 -1.0909 9.7829 41 1 6.0515 -3.3702 8.8731 42 1 4.9321 -3.7494 6.7148 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291359200.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:42 Heat of formation + Delta-G solvation = 120.119033 kcal Electronic energy + Delta-G solvation = -26585.116168 eV Core-core repulsion = 22954.894997 eV Total energy + Delta-G solvation = -3630.221171 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.95237 -39.91043 -37.57819 -37.02320 -35.14387 -32.16455 -32.02099 -30.67930 -29.98776 -28.94591 -27.77778 -27.62669 -24.96487 -24.11831 -22.55983 -21.80305 -21.04658 -19.78236 -19.33682 -18.52859 -16.95018 -16.19145 -16.15560 -15.79387 -15.47161 -14.80228 -14.54782 -14.34307 -14.06489 -13.66538 -13.53762 -13.28026 -13.04792 -12.87637 -12.66590 -12.55941 -12.47704 -12.28752 -12.07316 -12.01462 -11.68352 -11.50816 -11.21517 -11.05392 -10.73049 -10.25651 -10.17289 -9.89117 -9.79169 -9.58068 -9.13731 -8.99089 -8.70192 -8.44047 -8.04088 -7.20109 -6.64535 -4.18152 1.78187 2.21918 2.26364 2.47452 2.91815 3.39715 3.42412 3.60483 3.91172 4.16222 4.24573 4.27681 4.43758 4.53732 4.67906 4.73736 5.03691 5.12820 5.15447 5.28068 5.32951 5.34826 5.48801 5.53093 5.56656 5.66731 5.68595 5.79273 5.86374 5.96877 6.04908 6.37503 6.46045 6.55077 6.68184 6.85625 6.95308 7.03068 7.25211 7.35230 7.39673 7.48042 7.98673 8.08787 8.46705 8.65348 8.89349 9.12124 9.54429 10.58915 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.004607 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.379135 B = 6075.750190 C = 7013.191615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.169 3.831 3 C -0.146 4.146 4 C -0.158 4.158 5 N -0.302 5.302 6 C 0.159 3.841 7 N -0.427 5.427 8 C 0.170 3.830 9 C 0.571 3.429 10 O -0.547 6.547 11 N -0.377 5.377 12 C -0.417 4.417 13 H 0.117 0.883 14 C 0.045 3.955 15 N -0.865 5.865 16 Si 1.033 2.967 17 H -0.273 1.273 18 H -0.289 1.289 19 H -0.271 1.271 20 C 0.165 3.835 21 C -0.186 4.186 22 C -0.107 4.107 23 C -0.171 4.171 24 C -0.104 4.104 25 C -0.160 4.160 26 N -0.269 5.269 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.068 0.932 36 H 0.211 0.789 37 H 0.278 0.722 38 H 0.179 0.821 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.115 0.885 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.991 7.489 -10.157 12.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.086 3.914 3 C -0.204 4.204 4 C -0.216 4.216 5 N -0.100 5.100 6 C -0.136 4.136 7 N -0.150 5.150 8 C -0.109 4.109 9 C 0.361 3.639 10 O -0.429 6.429 11 N -0.085 5.085 12 C -0.544 4.544 13 H 0.134 0.866 14 C -0.166 4.166 15 N -0.496 5.496 16 Si 0.860 3.140 17 H -0.198 1.198 18 H -0.216 1.216 19 H -0.197 1.197 20 C 0.069 3.931 21 C -0.206 4.206 22 C -0.126 4.126 23 C -0.191 4.191 24 C -0.122 4.122 25 C -0.181 4.181 26 N -0.107 5.107 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.088 0.912 34 H 0.102 0.898 35 H 0.087 0.913 36 H 0.228 0.772 37 H 0.089 0.911 38 H 0.195 0.805 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.133 0.867 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -3.581 7.801 -8.443 12.040 hybrid contribution 0.535 0.013 -1.751 1.831 sum -3.047 7.814 -10.194 13.201 Atomic orbital electron populations 1.22245 0.92261 1.03511 1.03675 1.20985 0.95003 0.94130 0.81285 1.21961 1.02469 0.92606 1.03329 1.22229 1.02595 1.01156 0.95669 1.47740 1.42614 1.06357 1.13289 1.26689 1.03415 0.85953 0.97569 1.72108 1.13315 1.25043 1.04523 1.23474 1.05040 0.85179 0.97213 1.16945 0.79843 0.84367 0.82778 1.90310 1.57753 1.23863 1.70941 1.41189 1.45222 1.07222 1.14820 1.20857 1.46484 0.84367 1.02691 0.86602 1.26286 0.94065 0.93297 1.02919 1.70772 1.39530 1.14075 1.25253 0.84112 0.76933 0.76915 0.76038 1.19833 1.21627 1.19672 1.18331 0.93544 0.93820 0.87446 1.22785 1.02267 0.98404 0.97115 1.20998 0.98501 0.98062 0.95010 1.20928 1.04425 0.93203 1.00525 1.20849 0.99184 0.96625 0.95588 1.21207 1.01073 0.99992 0.95808 1.74252 1.15131 1.25473 0.95810 0.91335 0.90068 0.91412 0.91427 0.90825 0.90608 0.91192 0.89800 0.91301 0.77224 0.91076 0.80469 0.86927 0.87319 0.86674 0.83777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.35 8.72 37.16 0.32 -1.03 16 2 C 0.17 1.76 1.23 -131.82 -0.16 1.59 16 3 C -0.15 -1.48 8.04 37.16 0.30 -1.19 16 4 C -0.16 -1.20 8.28 37.16 0.31 -0.89 16 5 N -0.30 -4.72 3.17 -49.83 -0.16 -4.88 16 6 C 0.16 2.61 11.71 -90.48 -1.06 1.55 16 7 N -0.43 -9.38 8.29 -12.39 -0.10 -9.48 16 8 C 0.17 3.97 7.69 -156.32 -1.20 2.77 16 9 C 0.57 14.69 7.59 -12.40 -0.09 14.60 16 10 O -0.55 -14.21 13.48 5.28 0.07 -14.14 16 11 N -0.38 -9.88 2.26 -60.02 -0.14 -10.02 16 12 C -0.42 -11.23 7.32 -15.01 -0.11 -11.34 16 13 H 0.12 3.27 6.51 -52.49 -0.34 2.93 16 14 C 0.05 1.23 3.91 -17.47 -0.07 1.16 16 15 N -0.86 -24.16 13.69 55.50 0.76 -23.40 16 16 Si 1.03 26.05 24.67 -169.99 -4.19 21.85 16 17 H -0.27 -7.07 6.26 56.52 0.35 -6.72 16 18 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 19 H -0.27 -6.53 7.07 56.52 0.40 -6.13 16 20 C 0.17 4.11 4.19 -83.72 -0.35 3.76 16 21 C -0.19 -4.30 9.04 -39.37 -0.36 -4.65 16 22 C -0.11 -2.09 10.04 -39.61 -0.40 -2.49 16 23 C -0.17 -3.18 10.04 -39.53 -0.40 -3.57 16 24 C -0.10 -2.08 10.04 -39.61 -0.40 -2.48 16 25 C -0.16 -3.77 6.18 -39.36 -0.24 -4.01 16 26 N -0.27 -5.43 11.10 32.06 0.36 -5.07 16 27 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.91 8.02 -51.93 -0.42 0.49 16 33 H 0.07 0.47 7.34 -51.93 -0.38 0.08 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.21 2.43 7.53 -52.49 -0.40 2.04 16 37 H 0.28 7.64 8.73 -40.82 -0.36 7.28 16 38 H 0.18 4.28 4.53 -56.24 -0.26 4.03 16 39 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 40 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 41 H 0.12 1.99 8.06 -52.49 -0.42 1.56 16 42 H 0.14 3.61 5.44 -52.48 -0.29 3.32 16 LS Contribution 340.39 15.07 5.13 5.13 Total: -1.00 -32.76 340.39 -7.68 -40.45 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.50 Total: 5.78 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -3.91 Total: -6.23 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: 0.72 Total: -52.85 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: 0.07 Total: -14.14 kcal Atomic # 14 Polarization: 26.05 SS G_CDS: -4.19 Total: 21.85 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.76 -7.68 -40.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291359200.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.567 kcal (2) G-P(sol) polarization free energy of solvation -32.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds