Wall clock time and date at job start Fri Apr 10 2020 22:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47237 * 2 1 4 4 C 1.53004 * 109.47137 * 239.99626 * 2 1 3 5 5 N 1.46504 * 109.46910 * 119.99948 * 2 1 3 6 6 C 1.34586 * 125.74430 * 74.97746 * 5 2 1 7 7 N 1.30868 * 107.64399 * 179.75094 * 6 5 2 8 8 C 1.34597 * 107.26801 * 0.38831 * 7 6 5 9 9 C 1.47708 * 126.05753 * 179.87287 * 8 7 6 10 10 O 1.21592 * 119.99491 * 185.20442 * 9 8 7 11 11 N 1.34768 * 120.00365 * 5.20319 * 9 8 7 12 12 C 1.36928 * 119.99906 * 356.90365 * 11 9 8 13 13 H 1.07999 * 119.99781 * 48.06606 * 12 11 9 14 14 C 1.38966 * 120.00449 * 227.78809 * 12 11 9 15 15 N 1.31382 * 120.00204 * 195.11139 * 14 12 11 16 16 Si 1.86801 * 120.00036 * 15.10783 * 14 12 11 17 17 H 1.48501 * 109.46949 * 4.79705 * 16 14 12 18 18 H 1.48495 * 109.47305 * 124.79361 * 16 14 12 19 19 H 1.48492 * 109.47221 * 244.79920 * 16 14 12 20 20 C 1.39709 * 120.00409 * 176.90837 * 11 9 8 21 21 C 1.38982 * 120.07654 * 6.76343 * 20 11 9 22 22 C 1.38070 * 119.91812 * 179.76818 * 21 20 11 23 23 C 1.38315 * 120.08039 * 0.48872 * 22 21 20 24 24 C 1.38310 * 120.16149 * 359.76466 * 23 22 21 25 25 C 1.38081 * 120.07684 * 0.02562 * 24 23 22 26 26 N 1.28858 * 125.73832 * 254.97210 * 5 2 1 27 27 H 1.09000 * 109.47419 * 300.00184 * 1 2 3 28 28 H 1.09006 * 109.47257 * 60.00681 * 1 2 3 29 29 H 1.09003 * 109.47428 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46997 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.46441 * 299.99819 * 3 2 1 32 32 H 1.09000 * 109.47066 * 59.99600 * 3 2 1 33 33 H 1.08996 * 109.47093 * 299.99658 * 4 2 1 34 34 H 1.08994 * 109.47161 * 60.00419 * 4 2 1 35 35 H 1.09003 * 109.46907 * 179.97438 * 4 2 1 36 36 H 1.07997 * 126.17931 * 359.97438 * 6 5 2 37 37 H 0.97002 * 120.00440 * 359.97438 * 15 14 12 38 38 H 1.08002 * 120.03926 * 359.97438 * 21 20 11 39 39 H 1.08002 * 119.96300 * 180.22967 * 22 21 20 40 40 H 1.07999 * 119.92079 * 179.74483 * 23 22 21 41 41 H 1.07998 * 119.96357 * 179.97438 * 24 23 22 42 42 H 1.08003 * 120.03969 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0182 -0.6906 1.1962 6 6 2.0133 -2.0221 1.3924 7 7 2.5322 -2.2512 2.5718 8 6 2.8497 -1.0578 3.1072 9 6 3.4607 -0.8349 4.4334 10 8 3.6153 0.2974 4.8489 11 7 3.8466 -1.8863 5.1830 12 6 3.6149 -3.1622 4.7435 13 1 3.8734 -3.4403 3.7324 14 6 3.0525 -4.1009 5.6000 15 7 3.0997 -5.3784 5.2968 16 14 2.2295 -3.5464 7.1826 17 1 2.2063 -2.0625 7.2349 18 1 0.8386 -4.0649 7.2252 19 1 2.9891 -4.0709 8.3457 20 6 4.4830 -1.6744 6.4086 21 6 4.5937 -0.3880 6.9227 22 6 5.2191 -0.1829 8.1365 23 6 5.7439 -1.2547 8.8357 24 6 5.6402 -2.5357 8.3247 25 6 5.0124 -2.7488 7.1135 26 7 2.5248 -0.1254 2.2376 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9563 -0.8901 32 1 1.6766 1.9564 0.8900 33 1 1.6767 -1.7490 -1.2491 34 1 1.6767 -0.2076 -2.1392 35 1 3.1300 -0.7209 -1.2494 36 1 1.6504 -2.7672 0.7000 37 1 3.5268 -5.6664 4.4749 38 1 4.1882 0.4499 6.3750 39 1 5.3022 0.8160 8.5385 40 1 6.2362 -1.0909 9.7829 41 1 6.0515 -3.3702 8.8731 42 1 4.9321 -3.7494 6.7148 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291359200.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 22:59:42 Heat of formation + Delta-G solvation = 100.598331 kcal Electronic energy + Delta-G solvation = -26585.962649 eV Core-core repulsion = 22954.894997 eV Total energy + Delta-G solvation = -3631.067652 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -44.39727 -41.73610 -39.16276 -38.15146 -37.04106 -34.12245 -33.51690 -32.14811 -31.65525 -30.57520 -28.46037 -28.41429 -26.89405 -25.73865 -23.94496 -23.42563 -22.70228 -21.19691 -20.96609 -20.37647 -18.23234 -17.88131 -17.67256 -17.49204 -16.98555 -16.56651 -16.06009 -15.61074 -15.34251 -15.12822 -14.96126 -14.90674 -14.78670 -14.32922 -14.18000 -13.81256 -13.65863 -13.28511 -13.23572 -12.96791 -12.90167 -12.78898 -12.54520 -12.37158 -12.11317 -12.01283 -11.97243 -11.67827 -11.48383 -11.28955 -10.91250 -10.62467 -10.42923 -10.35373 -9.71474 -9.15773 -8.62629 -6.27092 0.10562 0.54793 0.72994 1.29543 1.30614 1.35504 1.44815 1.60543 2.24180 2.25500 2.37257 2.84318 3.15477 3.32294 3.38537 3.66788 3.76816 3.82623 3.95303 4.18663 4.21828 4.48342 4.55444 4.57562 4.62886 4.66915 4.69011 4.76320 4.78440 4.79159 4.88856 5.00103 5.08353 5.18445 5.19962 5.23852 5.55096 5.58492 5.63939 5.70836 5.76881 5.79502 5.93717 6.24365 6.47964 6.84433 7.01414 7.29455 7.55906 8.47024 Molecular weight = 314.15amu Principal moments of inertia in cm(-1) A = 0.018808 B = 0.004607 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.379135 B = 6075.750190 C = 7013.191615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.153 3.847 3 C -0.145 4.145 4 C -0.153 4.153 5 N -0.286 5.286 6 C 0.173 3.827 7 N -0.474 5.474 8 C 0.129 3.871 9 C 0.559 3.441 10 O -0.565 6.565 11 N -0.392 5.392 12 C -0.404 4.404 13 H 0.096 0.904 14 C 0.022 3.978 15 N -0.887 5.887 16 Si 1.062 2.938 17 H -0.289 1.289 18 H -0.288 1.288 19 H -0.251 1.251 20 C 0.133 3.867 21 C -0.207 4.207 22 C -0.100 4.100 23 C -0.152 4.152 24 C -0.102 4.102 25 C -0.181 4.181 26 N -0.274 5.274 27 H 0.044 0.956 28 H 0.119 0.881 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.115 0.885 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.054 0.946 36 H 0.260 0.740 37 H 0.271 0.729 38 H 0.162 0.838 39 H 0.150 0.850 40 H 0.159 0.841 41 H 0.148 0.852 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.276 8.238 -10.443 13.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.073 3.927 3 C -0.203 4.203 4 C -0.211 4.211 5 N -0.084 5.084 6 C -0.122 4.122 7 N -0.198 5.198 8 C -0.149 4.149 9 C 0.350 3.650 10 O -0.448 6.448 11 N -0.100 5.100 12 C -0.531 4.531 13 H 0.113 0.887 14 C -0.184 4.184 15 N -0.520 5.520 16 Si 0.887 3.113 17 H -0.215 1.215 18 H -0.215 1.215 19 H -0.175 1.175 20 C 0.037 3.963 21 C -0.227 4.227 22 C -0.119 4.119 23 C -0.171 4.171 24 C -0.120 4.120 25 C -0.201 4.201 26 N -0.115 5.115 27 H 0.063 0.937 28 H 0.138 0.862 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.133 0.867 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.138 0.862 35 H 0.073 0.927 36 H 0.276 0.724 37 H 0.082 0.918 38 H 0.179 0.821 39 H 0.168 0.832 40 H 0.177 0.823 41 H 0.165 0.835 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -3.858 8.549 -8.734 12.816 hybrid contribution 0.654 -0.038 -1.793 1.909 sum -3.204 8.510 -10.527 13.911 Atomic orbital electron populations 1.22275 0.90212 1.04325 1.04403 1.21699 0.96535 0.94213 0.80250 1.21995 1.01321 0.92804 1.04136 1.22280 1.01744 1.02115 0.94993 1.48279 1.40360 1.06564 1.13192 1.27380 1.01328 0.86997 0.96498 1.71918 1.15277 1.25500 1.07137 1.23167 1.07805 0.86449 0.97467 1.17343 0.79688 0.84235 0.83780 1.90282 1.58645 1.24126 1.71768 1.41263 1.46187 1.06835 1.15739 1.20575 1.45886 0.84877 1.01798 0.88691 1.26845 0.94159 0.93096 1.04343 1.70815 1.41249 1.14517 1.25464 0.83710 0.76642 0.75635 0.75347 1.21496 1.21516 1.17532 1.18649 0.95148 0.95129 0.87356 1.22772 1.03785 0.97250 0.98890 1.21431 0.96604 1.00487 0.93342 1.21448 1.02315 0.91742 1.01592 1.21293 0.97741 0.98770 0.94217 1.21174 1.02905 0.98532 0.97528 1.74156 1.15014 1.25659 0.96624 0.93677 0.86239 0.90586 0.93238 0.86673 0.93116 0.89772 0.86203 0.92716 0.72444 0.91831 0.82144 0.83228 0.82344 0.83455 0.86083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.72 71.98 0.63 -1.57 16 2 C 0.15 2.88 1.23 3.60 0.00 2.88 16 3 C -0.15 -2.77 8.04 71.98 0.58 -2.19 16 4 C -0.15 -1.79 8.28 71.98 0.60 -1.19 16 5 N -0.29 -8.87 3.17 -311.58 -0.99 -9.86 16 6 C 0.17 5.60 11.71 180.30 2.11 7.71 16 7 N -0.47 -21.69 8.29 -193.10 -1.60 -23.29 16 8 C 0.13 6.35 7.69 137.04 1.05 7.40 16 9 C 0.56 30.58 7.59 86.75 0.66 31.24 16 10 O -0.57 -31.18 13.48 -4.00 -0.05 -31.24 16 11 N -0.39 -21.64 2.26 -462.07 -1.04 -22.68 16 12 C -0.40 -22.96 7.32 84.07 0.62 -22.34 16 13 H 0.10 5.72 6.51 -2.91 -0.02 5.70 16 14 C 0.02 1.25 3.91 84.93 0.33 1.59 16 15 N -0.89 -51.22 13.69 21.66 0.30 -50.93 16 16 Si 1.06 54.02 24.67 68.60 1.69 55.71 16 17 H -0.29 -15.37 6.26 99.48 0.62 -14.75 16 18 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 19 H -0.25 -11.76 7.07 99.48 0.70 -11.06 16 20 C 0.13 6.79 4.19 38.24 0.16 6.95 16 21 C -0.21 -9.69 9.04 22.41 0.20 -9.49 16 22 C -0.10 -3.67 10.04 22.25 0.22 -3.45 16 23 C -0.15 -5.01 10.04 22.31 0.22 -4.79 16 24 C -0.10 -3.83 10.04 22.25 0.22 -3.61 16 25 C -0.18 -8.55 6.18 22.41 0.14 -8.41 16 26 N -0.27 -11.50 11.10 -52.49 -0.58 -12.08 16 27 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.21 8.14 -2.38 -0.02 1.19 16 32 H 0.05 1.22 8.02 -2.39 -0.02 1.20 16 33 H 0.08 0.77 7.34 -2.39 -0.02 0.76 16 34 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.26 5.34 7.53 -2.91 -0.02 5.32 16 37 H 0.27 15.57 8.73 -92.71 -0.81 14.76 16 38 H 0.16 8.08 4.53 -62.40 -0.28 7.80 16 39 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 40 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 41 H 0.15 4.53 8.06 -2.91 -0.02 4.51 16 42 H 0.12 6.25 5.44 -2.91 -0.02 6.23 16 Total: -1.00 -78.62 340.39 6.12 -72.51 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.64 Total: 21.13 kcal Atomic # 6 Polarization: -7.02 SS G_CDS: 7.75 Total: 0.73 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -3.92 Total: -118.84 kcal Atomic # 8 Polarization: -31.18 SS G_CDS: -0.05 Total: -31.24 kcal Atomic # 14 Polarization: 54.02 SS G_CDS: 1.69 Total: 55.71 kcal Total: -78.62 6.12 -72.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291359200.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.103 kcal (2) G-P(sol) polarization free energy of solvation -78.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds